Contig Data
morexGenes
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Map Locations of contig_1560448 (2555 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1560448

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11128 1 1035 bp MLOC_11128.1 Available Available LOC_Os04g41490.1, FRAME:+1, EVALUE:2e-129, 13104.m04071 protein DNA-directed RNA polymerase III subunit RPC1, putative, expressed





CDS Structure of MLOC_11128






Contig Sequence (2555 bp)

>contig_1560448 2555 assembly3_WGSMorex_rbca.fasta
GATACCTGATGGAGTTTGATGGATCCCGATCTCTGCACTCGCTCCTCGGAGGAGGTGTCT
ACGAACGACACCGTCCAGTTCCGATGCGCATCCCTGCAGATCCCATCTTCTGAGATGAAA
GACTCGCCGCTCAGCTGAACGGACTCCACTCCGAGCGATCCATCGGTGGCCGGAGAGGTC
CCTCCGATCGGCTCTCTGACGACCAAGGAGAGTGCCCCGGTGGCCTCCTCCGAGATCGCC
CCTCCTTTCGCCTCGGGAGCCATCGTTTTCATAACAATATATGGTCTAGAACTTGCCTGT
TGAGCCTTAAACATGTCACATGAATTTAGTGCATTCATAGTTACAAAGAATTGTCATTTG
ACATTCTCCCAGGAATTAAATATACATGCACTTCACCAATCTTTGGACTTTGCTGTGGAT
GCACAAAATCTTTGATTTTTTGTTTGGCTGTCTAGCAAAATATATTATAAAAATATCTGT
GTACATGTTTTATTAGCTATGTATGGATAATGTTTACAGTTAGTTTAATAACCAATCTTG
CATTATTGTGTATGAATTCACACATGTTGGTTTGAGTTGAGATTATTCAATGTTTTAGTT
TGTGTAGTCATGTTTTTTTTTTGCATGAGCTCAAAATAAAGAAAAAGATCTGCGTATGCT
ATATGTAACTCGAGTTGAACATTTTCTTCCCTCAAAAAGGAGGTTGAAACCCCGACATTA
CAGATAACTTTTGTAAGGAAGCACTCAACTTGACGAGAAACCTTGTTATGTTCAACAGGT
GGCAGCAGCCATAAAGATTGTCTTAAAATCAAACCAGCCATATTTGGTTGTTAAACTCGA
TACGCAGGGCATGGAAAGGTACATGGGAATCTCGTCTGACACCGTGCAGCTGTCAATACT
AAATCATGCAAAAACAAAGTTGAAGTCTGAGGTATGAACAAAGCTCCGAAGTCGCGTGAT
GTGCCCATCATTTTCTCTGCAATTGTATTTATGATATATCATATTTACAGCATGTTCGTG
TCATCGATGAAACCAAGTTGAGAATATATCCAGCCGGAACAGACAAGTCCAAACTTCAGC
TTGAGCTGCACAATCTCAAATCGATGCTTCCAAAACTAATTGTGAAGGTAAAAAAAAAGT
ATGCTGTACATTTTCTGACATCCATTATGGTTATGTAGCTGACCTTCCTACTGATCTTCA
GGGCATTCCAACTGTTGAAAGAGCTGTTGTCAACCCTGTTTTAAGACGCGATGGAAGTTT
CGACAGATACAACTTGTTGGTTGAAGGGTAAGGGTTCTTATTTATTGCTTCTGTAAATTG
TTTATAAGCCTCACTGTGACTTCTTGGATGCTAGTCTAAGATGATGATATGCCATGAAAC
AATTCTTTATTGCAGAACAAACCTCCTGAAAGTTTTGGGTACTCCTGGAGTTGATGCTAA
GAGAACAAAAAGTAACCACATATTGGAAGTGAACCAAACACTTGGAATTGAAGCTGCAAG
GAGATCTATCATTGATGAAATTCAGTATACCTTTGAAAATAACAACATGATGATTGATCT
GAGACATATGATGCTTCTGGCAGACCTGATGACATACAAGGTTTGTAGAGTCATCTTACA
CTGATCACCATTTTAATCATCCATCCATCTGCCTCAAGACTGACTAATAAATGTACATAT
GCTGCCGGTTTCACAGGGTGAAATTTTGGGCATCACGGCTAGCGGCATCGCAAAGATGAA
AAGCAGCGTGCTGATGCTGTCTTCATTTGAGAGAGCTTCGGAGCATCTCTTCAACGCTTC
ATACACTGGTCGCGAGGATCAGATAGAGGGAGTTAGTGAATGCATCATCATGGGCATACC
CATGCAACTCGGCACTGGTATCCTCAGAGTCAGGCAAAGGTAGGTGTAACGTATTGCCCT
TGAATTTTGCTATTTTGTTGTTCTTAGACCTGTTTTCGACGGCACTGTATGTTTACTTTT
TATATACGATGGAACCCTTAACCAAACAGACAAGTAAGCACATGATTAAATGCGTGGCAT
TTATTTTCCTTGCAGGCTCCAGGATTTGCCTGAATTCAAGTACCAGCCGGATCCAATTCC
ACTGTGAGATCGAAGAAGCTTGGATTTGGAGATGCATAACATGGGACTTTAGTTTATTTA
CAGCTCGTTTGGCACCCTCATTTCATTTCATTTGGTGGACGTGTCAAGAGGACCTATTTA
CGCTTCAATACTTACAGGTGCACGTCATGTAAATGAAATTTTGAATGGAAATGAAGACTT
GTATGCAGAAGGCACTTCAGAATGGAGATTGACATGTTTCGAGCGTTGATTCAGAAATTG
CGTGAGAATGCCCGCCTTGTTGCGTCAGAATTACTAGTGCAGATTCAGTTGCATGCTAAA
CAAAAGGATGTTGTCATACCCACTAAAATACGGAGTATAATGGACCAGCTACGGCTGACT
GAACTAACAAAACAAAAGTACTCCCTAAAATAGCTATCTAAAGGATCTTATATTAATTCA
CAAAGGGAGTATATGCCACCTTTTTTTTTTTTTTT