morexGenes - Barley RNA-seq Database

Contig contig_1560441
Source Contig contig_1560441
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1560441 (10155 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_1560441

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11127	1	297 bp	None	Available	Available	None
MLOC_11126	5	3000 bp	MLOC_11126.3	Available	Available	LOC_Os10g33720.3, FRAME:+1, EVALUE:0.0, 13110.m02978 protein methyltransferase, putative, expressed
CDS Structure of MLOC_11127

CDS Structure of MLOC_11126

Contig Sequence (10155 bp)

>contig_1560441 10155 assembly3_WGSMorex_rbca.fasta
ATTTAGGAATGGAGGGAGTAGTATAATATAATGGCAATCAAATGATACTAAGTAATTTGG
TTTCTTTGCAGTATTTTGTACTTATGTCGCACTTGTTGGAAGTGTACCCTGAGAAGGTTG
CTCACTTAAACAGGGATGCTTTTGGAAGAATTACTGGTAGTCTTGAATTTGGTCTGCGTA
ATCAGGCAAGAGGATCTTCACGTAACTGCATTTACTGCTTGTCCTACTTTTGCTTAAATT
TTCAAATAGAAGCAGCACTCACTGCAGTGAGCTACTGAGTTGGTAGCAACTGCACCTTCA
CGTAACTGCATTTACTGCTTGTCCTACTTTTGCTTAAATTTTCAAATAGAAGCAGTACTC
ACTGCAGTGAGCTACTGAGTTGGTAGCAACTGCACCTTGCTTGGTTATATGGCGTGCCTA
GTGCCTACAATACCCTCTGTTACCAATGACTTTCATCTGGATTCTCCATGAACCTATGCT
CAACTTTCTATATCTTTCTAATTTGCTACCGTGAGCACCTTAATGTGCAATCATTCTTGG
GTTGATATAAGGTGATCAGAGTAAGTCTTCAGTGTATTGAAATCATGGAAAGTGTGGTGT
ATGCTATAAGATTACTGGACAAAACCTCTGTTTTCTCAAATGGGATATAACTGGCAGATT
ACAATGAATAATCAGATGTATTTTTGCCTGTCACTTGTGATGTTTACAAATATTGTTTGA
TCTATATAATATGTGAAACAATTGTGATTGTTGTGCATTCTGTATGTTTGAAATACAGTC
TAGTCTTTAGCTGATATAGCTAGGTTTGTGTTTTCCTTGTTGCAGGATGGCGATGTTGTT
GAGAGGTGTCTCGCAGCAGTAAATGCCCTTGCCTCGTACCATTTCAAAGAAAGACTTGGA
GGCAGAGGAGGACTTGGCTCGCAGGTTATGGAATCTGAAGGATCGAATGGCAAACTTCAG
GAAAGCATAACAAGTCACTTCTTGAGGCTTCTCCTGCAACTACTTCTGTTTGAAGATTTT
AGGTGAGCTCCGCACGTCGACATTGAGTAGATTTAGGATCTTGTAACTTAATTTTTTAGT
GCTGGTCCGTTTACCTTATTTATTGTTGTACATATCTGATATATGTGACTGTTGCAGAAT
GGAACTAGCAGGTTCTGCTGCAGATGCTTTGCTTCCTTTGCTTTTCTGTGAACAGGAGTT
ATATCAGGTCCTTTTCACCACTTCTCTAATAGGCTAGCAGTTTATCAGATCAAGCACAAT
ACCAAGGCTTAACTTCTGTTATTTTGCTATGTGTTCTCATCACGTCTCCCTCTGCAGAGA
CTGGTCCATGAGTTGCTTGAGAAAGAGCAGAATCCGACTGTGAAATCAAGGCTGTCACTT
GCTTTCCATAACCTGACAAGTTCTAACAATCTCTCAAGCACGCTTGACCGGCCAAACAGG
CAGAAATTCCGGAAAAATCTCCGTGTTTTCTTAGGCGAGGTCTCGGGCTTCATGCAGATA
AAGTAGTTGGGGAGTTACATGAAAGCATTGATGTCTGGTCGATCCCCTGAAGATTTTTCG
CCGTTGTGGTAGAGTCCATGTGTGGCGGGGCCATGAGCAGGAATTCTGGCGTTAGAGGTT
GAAAACGCATTTGCCGTTGTGTGTTGAAGGGATAGTCGAACAGAACTGGCGGGAACATGT
CGGACGTGTTCCAGGATCTGTGTCTGTGGCTGCATTTGGCGGTGGAGAATTGGATGCCCT
GGCATGAGATCGTCGTCGTGTAAATTTAGTTGGGACTCGGATGTAATCATACAGAAAAGG
TGGGCATTTTCATTTAAACGGAGAAGGAGGTCATTTTGTTGCGACTGTTCTCAATTGGAG
CAGTTCTCTTCTCCCACATGTGTGGGAGATACAGCTTAGAAGAAAGGATTCGACAACGTG
TAGTGCGTAACTTGTGTCCGCCCAGAAACGTGAAACACTGGGGCATGCTTTTGCAATGCT
CAATTTTCCCTCGAATCCTGTGGGAACCCAGCTGTTTCGTGTAAAATGTCTTCTTACAAA
GCAACTGAACAAGCACATCTGCACATGTTATCAACCGGCTGGGGCTCGCTTTTAGCGTCT
GAGCCCTAGGATTCCTGCTAGTCTTTTGTTTGTTTGTTTTTGCCAGGAACTAACTATCGA
AATGATCAGCAGTGTCATGGCTGAAAGATCTGTAACCTTACTCACCAAATTTGGGTGGTC
TTTATGGTGGCGCCATAACTCCCTTGGACATGATCATGCCAAAACTGGCGCGGAGGACCA
TTGTGTCGCTGCGCCAGTCGGTGACGCTGGCATATGTGGATTTTGATGACCACTTGCTGT
GTGGATCCCATGGAGTTCCGTGGAGCAAGCTGTTGCGTGTCGGTGGCTGCATGCCCGTGT
CGGTGACTGCATGCCCGTGTCGGTGACTGGATGGGTAGATCTCTGGTCTAACATTCGGTG
CGTGGAGTGTGGATGAAAACCAACCAGGCAGTTTCAGAACGTGAGTATCCATTCCCTCCG
GCTCGGCCTTGGCCAGTTGGGTTTCCTCCGGCTCGTTTCGAAATGGCGTTGTCTTGTGCA
CTAAAAGTCTTCTCTAGTACTTCCCCGTCCTAAAATAAGTGTTTTAAGTTTAGTACAACT
TTGTACTAGCTCTNNTATAAAGTTGAGACAGTTATTTTGGAACAGGGAGTACCAAATATC
CGCAGAGAACGAAAGGGCATATGGGGAAACAAAAGGAAAGACTCACGTTACCAAGCTGAT
TGGCCATACGCGCATCGGCACTGCAGCACCAGCAGCATGACAGCGAAGGGAGAGATAATA
AAACAAACAATAATACAAGTACTAGTCCCCTTCCCCTCCCTCCCATTGGCATTGGGCCGG
CGCCGACAGAGATCTCCCCCCTAAATCGCCAACGTTAATCATCTGAAAAAGACCCCAGCA
CTAATGCTAATCTACCAGTAGTACTAGAATAACAATCATAGTCATCATCTAAAAAGAGAA
AAAAAAACAATTATTATCCGGCACGGGGACGGGCACGGGCACGGGACATTCCCTCCGCTT
AACAGCGTCCCGTGTACCGCGGCGTGTTAGTTTAATCTGCCCGCTAATCATCTCGGGGAT
GTTGCTGCTGGTTTCATTAACACGCGCCACCAAGAGTGCAGACCTGCCCCCTTCTCTCTC
TCCCTCTCACGCTAGCCCCGCAAATCGAGGCCTTCCGCTGGCCCTCACCCCCGCCCCGCC
ACCAGGCTCACCCCAGCCAGCCAACGGAGGCGACGAGCGCCCGGCCCGCGGCGGCACTCT
CCCGCCCGCCCGCGCACGGGATCCGCGACGGTGCGTTGCCTCTCCCCCCCTCGCATTCTG
CTGCCTCCCTCTCTCCCCTCGGTCCAGCCGTCCATGTCGCCGCCGCCGCCGCCGCCGCCC
GGCGGTGCGATCTGGTTGCGATGCCTGACGCGTCTTCCCGCGGAAAGGGAGCGTGGAGCC
CAGGCGGCCACGAACGCGCGCGGCGTGGGTTTCGGTCCAGCATCGCGTCCGGTGGGATTC
GCGCGCTGTGTGCGTGTTGGGTTTTTGCGTTGGTTCTTTTTTATTTATCGTTCCGTCTGT
TAGGATTTGGTTGGTTCGTCTTCGGCTGCGATTCTTAGTAGCAGTCGTTCCAAACCCTGG
GGATTTTTCAATCCGCTGCTGGCCTCGCGCCGGACGCACTCAGGTCGCAGTGCCCGTCGC
TGTCTCTCTTGTCTCCGCTGGGTCAACCTGAAGCTCCCTTTTCCTTACGCCGTATGCTCG
GCTGCCTAATCCAACTGAGCAAAGAGCTTCCGTGCTGGCGAACCGAATTCTAAGTCTGCT
CCGTGGAACTGGAGACCACGCCGCAGATCTGAAGGAATCTGCCAGCAAAATAGAGTAGCT
CGGAAGAGGGGAGCTTTATTTAGAGAAGTACTACCAGGACTAGTGCTCATCTCCCCTCTG
TGATCTGCCCCCAACTCCTCCCTCTTCACCACTGCCGTTCGCATACTTATACGCACCCTC
CGTTTTGCACCAGTCTGGGGGTTCGGCTTGAGCATTGTATTCATCCCGAGGATTTCTCTT
CTCAGGCAATACCAACGGTGTCCGCTTGACCTTTTCTAAGCGGGTATACGCTTCTAGCTT
CCTCCATTGCATATCTCAATTTGGTTCTGTTGCTTCAACTCTACTGCGGCTTGCCTGCTG
CTTAGTTTATGACATCTTATTGTTGGTCTCATGGCTTGTTTTTTTGCTTTCTGCAGATCC
GTGCGTCCCAGCAGAACTAGGATTTTCTGTGGTCCTTCATGAATCTTGAGGACAGTCTAT
ACTAGGGGGGCAGTAGGGTACTACTACTACTAGGATTTGGGATCCTCCGAAATGAGGGGG
AGAAATGATGGGGGGCAGAGCAAGAGGCCCGTTGTGCTCTTCTGCGTCATGGTCGTGTGC
CTGTGCCTCCTCTTCCTCTATTTCTCGGGCTCCAATGGCCAGGCCGGGAGCGCAGCACTA
GAGTACGGCACCAAGTTCTCTCGGTCGCTTGGGTGGGGCAGTGACGGAGATGGTGACGAT
GGCTCGGAGGAGTCAATTTTTGGGACTGGCGATGCAAACGATGTTAAGCTCAAGAGCTTC
CCCGTGAGTTCAGAACCAGCAATCAGTTGTTTGTTAACACACACTCTCTATGTATGATGA
TAATTCTAAAGGTTTTTCTTTTGGTTTACTCTGAAGGTATGTGATGATCGGCATTCTGAG
CTGATCCCCTGCTTGGATAGGAACTTGATATATCAGATGAGGTTGAAGCTGGATCTAAAC
CTGATGGAGCATTATGAGCGGCATTGTCCTCCTCCTGAGAGGCGCTTTAATTGCCTCATT
CCACCGCCACATGGCTATAAGGTCACCAGATTATCCTTTCTTTGTTTTTTCTTGCCATCC
TTGCCTTATTTTGATTATGTCTCTGAGCTACAAAGTTGCTGGAGTTGGGTTCCGTCATCC
ACCATCTCAACATATATCTTCAAGCTGAACCACTTATTTTAGTGATTATACATTATGCGG
TCAAGATGTCTTCTGCATGTAGATTTAGGTTTGATCTGGCATAGGAAAATGGTTTGAATT
TTTCCTGCTCTGTTCTGGAGCTGGACATTCTTGTTACCTTCTCCTGACCTATCAAATTTA
TACTTATGTTCAGATGGTGCTGTTTAATGTGGTTCGTGCCAAGCCACATTAGACTCATGA
AACTTAGTTTTGCAGGTTCCCATAAAATGGCCAAAAAGCCGTGATATAGTGTGGAAAGCA
AATATTCCTCACACTCACCTTGCAAAAGAGAAGTCAGACCAGAACTGGATGATTGATGCA
GGCGAAAAAATTAAGTTTCCTGGTGGCGGAACACATTTTCATCATGGAGCTGACAAATAT
ATATCAAACATTGCAAATGTAAGTATGTTCTAGCTTCTTCACAATAATACTCTGCTAAAG
ATACGCTACACATATTTGAGCACCATGCCCTGTGAAGCTTCACTTTTTTTTACTGTAGGC
TTCACTTTGTGATCCATTTCTTCTACTATCTGACAGATGCTAAACTTCAAAGATAACATT
ATAAACAACGAGGGAATGCTTCGTACAGTACTTGATGTGGGTTGTGGAGTGGCTAGTTTT
GGAGGATATCTTCTTTCATCCAATGTCATAGCCATGTCTTTGGCACCAAACGATGTACAT
CAGAACCAGATCCAATTTGCTCTTGAAAGGGGGATCCCTGCATATCTTGGTGTTTTGGGA
ACAAAAAGACTTCCATACCCCAGTAGATCGTTTGAATTAGCCCACTGTTCTCGTTGCAGG
ATTGATTGGCTTCAAAGAGATGGAATTCTTATGCTTGAACTGGACAGATTACTCAGGCCT
GGAGGTTATTTTGCTTATTCATCTCCTGAGGCATACGCACAGGATGAGGAGGATCGTAGA
ATCTGGAAAGAAATGAGTTCCCTTGCAGAAAGGATGTGCTGGAAAATTGCAGAGAAAAAA
AATCAGACAGTTATTTGGGTCAAGCCTCTGAACAATGATTGCTACAGGAGCCGACCGCGT
GGTACAAATCCGCCTCTATGCAAAAGCGGTGATGATCCAGATTCAGTATGGGGAGTGACA
ATGGAAGCTTGCATTACTCCATATCCAGAACGTGAGTATTTGTCCTACTCCAATTGTAGA
TTTTTACCTTTTATTGCTTATCTACTGGCTGGATACTTGATATATTGTCATCTTTCTTCT
CTAGTGCTTTTGGTACTCCAAACTGGTTGGCTTGTGAATTGTCGGCCTGTGAATTGTTCC
ATGGGTATTGTTTGCTGCACGTTAGATTACTGGATTTTTTTCTTTGAGTGGCAGGAACAT
CAGCTATGATTTATTGTCACTGCATGCTGCAAGGATGCATCTTTCCGTTTTGTTTTATCT
AAAAAAAGTGCACGCACACAAGCACACACACTCACTTGTCAATATTGGAAAACAAAGGAT
CTTCAGTTTGGTTTGTTTCCTCTTTGTCCCTCTCACCATGCTTTCCAGGAATGTTGGAAT
TTGGGAATTAAAGTAATAACCAAAGAGCATTTGTGTTAATTTGCGGTTTCATGGAGGTTT
GGTTGTGCTAACAGGTAGGATGGTTTATGGTCATTAGCGTGGAAATGATTGAATCCTTCC
GATTTCCACTCCCTAATAATTGTCATCCCTGTACTCTGTCAGCAATAGAAACATGGAGAT
ATATACCATTTCTTTTCTTCCTTTTTCCTCACGACATTTTGCCGCTAATTTGCATCTAAG
TGAAGTGACAATTGATTTAATGTTTGCAGAAATGCACAGGGATGGGGGAAGTGGATTGGC
TCCTTGGCCTGCCCGATTAACAACCCCACCTCCTCGCCTTGCAGATTTGTATGTTACAGC
TGACACATTTGAAAAAGATACGGTAAATTGCTCATATTATGTCTTTAGAACTTCAGTTAT
GTCCTAATAATCCTTCAAGGATCTTAGATGAAATCTCTCCATGCAGGAAATGTGGCAGCA
AAGAGTAGATAATTACTGGAATTTATTGCGCCCAAAGATAAAACCAGAGAGTATTAGAAA
CATCATGGACATGAAAGCAAACTTTGGATCATTTGCTGCTGCTCTCAAGGAAAAAGATGT
ATGGGTGATGAACGCCGTGTCCCATGATGGACCAAACACTCTTAAGATAATCTATGACAG
AGGGCTCATAGGCTCTACACATGACTGGTACGTGTCAATTCACATAAGATATTTGCATTT
GAGATGTATGATACTATCTTAGGGCTATGGTCTTGTTTGATTTTAGGACATATACAAGGA
AATTTTGACCCTTGTATCTGCAAAGAATTAATAAGGTTTTATGATGGAAACAATATTATT
TGGGACTAAAGGCTTTGTTGTTGTTGTTGTTGTTGTATGATGGAAACAGTACTGCTACTA
ACCTTCTTCCTCATTGGCCGAGCTTCTCATGTGCCATTAGAATATTAAGGATAAAACCCT
CCATTGCTTTGGCAGGAAATATTCCTTGCTAGAATTACCCCTGGTATTGTATTATGTCAC
CTCCGTAAGTAAGAGGAAAGTAAACACTGCGAGGTCAGTAGGTCTATTATGCATTTATGC
TACTTGCCAAGCTTCCATCTCAGAATATGTTGTTGCTATCAAAACAAATTGGTTAGGTTG
CTGCGATGGTAGTTTAACCCTCTGCCTTTTTCCTTGTCGTCTTAAAAGTTTTTCAAGCTG
CACCAGTACACCTTGTATGTCGAAGTTCAGCAGTTCCATTCGTTTGTAGTCTTGTGTGCT
TACAGTGAAATTACAATGAAACCGTAGAGTTCGAAGCCGGAAGCCCTTCTCTAGGTTATC
AAGAAATAGCATCACTTTCCAAGATACCATGGAAATGGAGAATGCATTCTTGAATTACAA
AATCCATTTTTCTGGATCAGAGTGAAGTGTCCATGATTTCTTTGCAGATTTTTATTTTCA
ATCGCTGCAGTTTTCTCCCTGCAGTGAGTTATATGCAGTTTGCACCGTTGCTGGTCGGTT
TGTTAGGCAGTCGTATTCAAATACAATAATGTGTTTGCAGGTGTGAGGCATTCTCTACTT
ATCCTCGAACGTATGATCTTCTGCACGCGTGGACAGTCTTCACCGACCTTGAGAAAAGAG
GTTGCAGTGCTGAAGATCTGCTCCTTGAAATGGATCGTATACTCAGGCCAACTGGTTTTA
TCATCGTGAGAGACAAGGCCCCTATCATTGTATTCATCAAGAAGTACCTCAATGCACTTC
ACTGGGAGGCAGTAACTGTTGTGGATGGCGAGTCCAGTCCGGAATCTGAGGAGAACGAAA
TGATACTCATAATCAGAAAGAAATTGTGGCTACCAGAAGGAGGTTCACAAGACTCGACGT
AATCATTTGATCTGAGTTTCTTTGGCACCGTCAGCATCTGCAGCTCAGGAGCCAAGAAGT
GAAGGCTCAGCCGCTGCTCCCTTGAATACGCGATTCAGTATTGCTGCTCCAGAAATAGAA
TTCTCAGCCTCAGCCCTACTATCCACGTGAAGATAGAATGTTTCTCAGGATATGGCTAGT
GTCCGGAAGGCTAAGCTCAAGTCCTCTCTCCTTTTGTTGTCTCCACAGATACTGTAATCG
TCGGTTAATGTTTGTTCTCTAGCCTGGTTAGGAAATAAACCTTTTTCTTGTTGAGCTTCA
GTTAGGTGCTTCCCGTCTATTTGTTGAAGTGGTGTTTAGTAAACAGATTTGGTGCTTATT
GTAAGAGAAGATTAAACTGTAAACATATTTTGGGGGAAATGAGGTTTAGCCAGGGATAGT
GGCCTTAAACCACTGAAGAATGTATACCTGCCCGAAGAATGGTGTTTGAGATGTTCTGTC
TGTTCTCTCAGTCTCATTCTTAACCGATAGAGACAGCAGCAAGCACATAATCTCAACTAC
TACTCCCTCCGTTCCTTAAGACGTTTTAGAAATTTCATTATAGACTACATCCTGAAATAT
GACTACATACATCCGTATGTAACTTATAGTGGAATCTCTAAAATGTCTTANNNNTAGGAA
CGGAGGGAGTAGCAAATATTCCCTTCGGCCCATAGTGTAAGACCTTTTTTGACACTAGTT
ATGGGCTGGAGGAAGTAACACCGATAGACCCTGAAGAGAGAATAGATAGAAAATCAGGAA
ACTATTACGCTGAAGAGATAATAGATAGAAAATCAGGAAACCATTATTCACCATATTCAT
ATTTTGATTGAAGAGATTGATTTCTCTGATATGCACATGTATGCACTATTAGCTCTGTTA
TGCATGAATGTCACATCCTGGATTTTTCTAAAATCTGAAATGTTTAAAATTTCACAAGGA
AATGTGTTTTTTCTAGAAATACTTGAGTTCGGTGCCTTTTTTTTTTCGCGGGAAGAGTTC
GGTTGCCTTTAGCTAGAATTAGGATAGGAGTACTTGAATTGTTGGAAATGTGGCCAATTG
AACCATGGGAACTATTCAGGAACCCTAAACTATCATTTAGGATCATTTATAAGCCACATG
TTAGTGCGCCTAGTAATAGATTGGAAACCAATTTCCAAAACCCCTAGCTCTAGAAAGAAA
ACCCTAAAGCCATCCCGATTTAAAGAAATGACCCTAAAAGGGCAACTATGGAAATGAAAC
AATCCCAAAAAGGGATAACAAACCAAATGTTCAAACTAGACAGAAAAACAAAATCAATGG
AATCCAAATAATAGAAAAAACTCATTTGGAAAACAGAAACATATTCAAAGAATATTCAAA
ACAAGGCATTGGAAAACATGACAAAAATTTAATAACCAGAAAGCCCCAAATAAATATATA
TCGCTTTACAAATATCCAAAAGGAATTTAGGACAAGGTTACCTTTTGAAGAAAATCAAAT
TTCGAAACAGATTTGAATTAAGAAAGAAAACAAATACAAAGGAAAGAAAAAAAGAAAATA
AAAAGGAAAAGGCCAGCCGCATCCACAACCCATCAAGCATGACGCAACTAGCCTAGCCAG
CCCACCACAACACGCAACCCAACCACTTAGGGCGTGTTTGGTTCCCTGTGTAGTTTTAGG
CTGCATCGCATGGAGGATGCTGGGTGAGTGTGGCCTGGTTGGACTGATGCAACGATGAGC
CGAGATAGTGTTTGG