morexGenes - Barley RNA-seq Database

Contig contig_1560435

Source Contig contig_1560435

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1560435 (5289 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1560435

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11124	1	4692 bp	MLOC_11124.1	Available	Available	LOC_Os03g27820.1, FRAME:+3, EVALUE:8e-40, 13103.m03253 protein expressed protein

CDS Structure of MLOC_11124

Contig Sequence (5289 bp)

>contig_1560435 5289 assembly3_WGSMorex_rbca.fasta
CCGCGCCCCCCCCCCCCCGCCCGCCGCCCCCCCCCCCCCCTCCCCCCTCCCCCCCCCCCC
CGCCCCCCCCCCCCCCCGGAAGGGCGCGGCGAGCGTTTGGAGGGCGCGCCCGCCACTACT
GGCGGTGGGGTCGCCTCAGCCCCGCCCCGATCCGGCGGGGCCGTGGCTGGGTGGACGAAG
CCTGCTCCGGCATCCGAGAAGCAACTGGGCTCGATACCGGCTCCTAGTGGCGTTGCCAGG
CTCCCATCGTATGGATTCCAGGAGAAAGCTGTCGTCCTGCGGGGCGAGGACTTCCCTTCT
CTTAAAGCAGCGGTGGCGCCACCACCTGCGCCACCCGTGCAGCATCGCCAGAAAGACGTT
GATGGTGCTCAAGCCGCCATGCCGGAGACACAGCCGATGCCCCTGGGCATGCGACCGCAT
GTGATGCCCTCGCGTGGTGCTGAGCCCTTGGCTTCTGCCGGCGTCACAGGTACTGGCCTC
CATGGTTCAGCGGAGAAGGCCCAAACTCATGATTTGGGGCCGCTGCCACTGGTGCGGCTA
AGGTATGATGCTGATTGGGCTGATGATGAACGTGATACAGGGCTGAGTCTCCCAGATCGC
GACAGTAAAGAGAGGGGATTTGGTAGGATTGAGACCATGGTTCCAGGGTGCGACTTCTAT
GGTGCGACAATGGAGCGCTTAAAAAATGAGTCCTTGGGGAGAGATTACATTGCTCCCAAT
AAAGAGGGCGTGCAAGATGGTTTGTGGCGATCTCCTATGCCAAGCCACAATGTGGAGAGG
ACAGATGGTCGTCCTCACAGTGCAGGCAAAGGAAGCGGACAGTTACTTTACCATGAAGGC
ATTACTAACGGTGCCTCCAAGGATTTGTGCAATACTAGTAAGGAGCCTGCTGTGCGAGCC
TATGGACAGATTGGGACGGAACTGCACGGAAGCGCACATATTGGGGAAACTGCAGGTGAA
TGTTACAATGATAATTCTAATAACTGGTACAGAGGGAAGTCTTTCCAGAATAATCCTGTT
TCCAAGGTGATGCCATATCTTGGTAATAAGGGACCTTTAGTTAACGAGCCAGGAGCAAAA
TTTGGCAGGGATAAGTGGCTCACTGGAGTCCCTGTAAGGCCTTTAGTTGAGCATACCGGT
TTTGATAGCATTTCTGCCGTTAGTTTCAGTTCAATAAAGAAGAAAAAAGAAACAACCAAA
CCATCAGATTTCCATGATCCAGTAAGGGAGTCATTTGAGGCTGAGCTCGATAGGATCTTG
AGGGTACAAGAGCAAGAAAGACAGCGGGTAGTGGAAGAACAGGCCAGAGTCAGAGAAATC
GCTAGGAAACAAGATGAGGAGAGGGAGAACCTGATAAGAGAGGAGGAGGAAAGGCGGCGG
TTGGTGGAAGAAGAGGCAAGACAGGCTGTTTGGCAAGCCGAGCAAGAGACGCTGGAAGCT
TCCAGAAGAGTTGAGGAGCAGAGAATTGCTAGGGAGGAAGAGAAGATGAGGGTTGCTATG
GAGGAGGAGCGGCGTAGAGAAGCCGCACGTCAAAAGCTCCTGGAATTGGAGGCAAGGATT
GCTAGACGGCGAGCCGAATCAAACATGAGCAATGGAAATCTTACTTCAGCTGCCAATGAT
GAACAAAGACTTGGAGCCTTGAAAGACAGAGATGTGTCACGGTACACTAATGCTGGTGAA
AGACATGCTATTAGCAGACTGGGTGAGCGCATCAATACCTCCATTTCATCGGTGGCTTCC
AGTCTCAACCGGTACAGTGATACAGTTCCAAGGGCGCTCAACATTATGGGAGATGGACAC
TCAGGCTTGGTTGATAGAGAACACGCATACCACAGTGCAAGGGCTGCATTTGAAGACCAA
GAAAATATACATTACAGCCCACGGCGTGGCACTTTGGGTACTAAGAGGGAAAGTTTCCCT
AAAAAAGATTCTTATGTTGGATTTCGGGCATCGTCAGTCGGGCCATCTTCGAGAGACCAA
ATCAATGATTCACCATGGGCACTGGAAGATTACAGTCAAGGAAGAGTTTCAAGGTGGGAT
GCACCGACGGAGAATAACTGTTTTGACAAGCAGTCTGAATTTGACACTCATTTTTTTAAC
AGTGATAGGTTTGGAGATGCTGCATGGCTGCCTAGTGGTTCCTACAGAAGCCCCAATGCT
CAACAAGGAGGGAGAATGTTCCAGAACTCCGAGGCTCATGATTTCTCGTCTTCTACAAAA
TCCTGCTATCCTATGCGGCATCCATGTGTACCCCCACCACATGTTGTGACCTCAATGCAT
GGAAGTGCAGTTAGTTCTTCTATTCAACGTGCCAATTCATCTTTCATTCATGATTTAATG
AGAGAGAGTTCTAGTAGAGATGATGAACAAACTATGCACAGTCAATATGGTAGTGCATAC
CAAGAAGTATCCCGCCAGCATCGGACGCCTGCTGAAGGCATTGTTGTCAATGAGCAGCAA
AATGGGGACAGGGCGAGCCCTGTTTTGGGCTCACAATCTTCTCTTTCCGTTTCAAGCCCT
CCTAGGTCACCTGAACATGTTTCACATGACGAGATGGATGTTTCTTGTGATTCACCTGCA
CTGCCAACTTCTGCTGATGGTGATCGTACTGTGGTATCTGATAATGACCAAGTGGCTTCA
ACTTTAGATGCAGCAAACATAAGCAGAATCACTACCTCAAGCGCGGCTTATCACATGGAG
GATGAGGAATGGCCAAGTGAACACAATGAATCCAAGCGAAAACAGGATGAGTATGATGAG
GAAGGCAATAGCTACCAAGAAGATGAAATCAATGATGGCGAGGGTGATACTCTTGACTTG
GCTAATGAGTTCACAGATGTGCATCTTGACTTGGATGATGAGTTTGCAGATGAAGATAAT
ACAACTGCAGAAATGGAACCAGTTATACTTGGATTCGATCAGGGTGTACAGGTTGAAATT
CCCGTGAATAATGAGCTTGAATTAAGTTCTGTGAAGAGCACTGAACTGGAAGTTGGTGTA
CACTTGGGCGTCGTGAAGCAAGAGTTGAGATGTGGTTCAGTTGATCCTTATGACATTGTT
ACGCTTCAAGGCCTTGATCAAACAAATGCCTTGGCCGATGAATCTAATGTTGATCCATCC
GGTAGCACAGCTGTGTCAAGTTCCAAGTTACCTCAGGCATCTTTTGCCCCCCCTATTGAT
TCATCAACATCAGCAGTAATTGACCAGAACGAAGTTCCTGTTAGTCTGGGTTTGTTTTCT
GGGCCATCTTTAATACCAACTCCGATTCGAGCCATTCAGATTGGCTCCATACAGATGCCG
ATCCATCTCCACAATCAGATTAACCCATCCCTGGCTCAACTGCTCCCTTCATCAGCTCCT
TTATTCAAGTTTGGTCAGTTGAGGCATGTCCGCCCTGTTGCCCAGAATGTTCGACAACAT
TCTCAGGCGGTGCCCTCCATTCAGCCCCCCGCACCAACTCTACATATATCGAAACAGAAT
GGTTCGAGTGGTATACCTAATGAGATGGATCGAAATGCAAACCAGATTACCCCAAGAGAA
TCAAATTTGCATCAGCGCAATGAATCTGAAATCAACTGGATGGCTGATTTAAATGAATTT
CAGAGCCGATTAGACAGAACTTCAATTGGAGAAAATGCATCTTTCAGACTTTCAAAAGGT
GATTCTCAGAGGAATAATGATATCTCTTCAAAGCGGAATCACAAATCTTCTTTCAGTAAC
ACAGAATCTTCTCAAGTTGGTTCATATGGGAAAGCCTTGAGTGGCATAAAGGCTCCAGGC
GCTGTATCTGGTGGAAGTGGGAGGAGATACGATTATGCTGTTAAAGAATCTAATATGGGA
TCAACAGGCTCACCTGTTGAACCTTTTCATAAAGACTCCAGAGGATTCCAGAGAAGGTCT
CGTAGGAACATAAGAAGAACTGAATTTAGAGTGCGGGCAAATGTTGAGAAGAACGAAACC
CAAGCTTCTGAGTGCCATGATGAGCAGAATGAGAATCCGGTTCCCAATGGATTGGCAAGG
GAGATTCCGGTGAGAAATGTGAACAGAAAGGAAGGTACAAATGAAACAATTGATATTAAT
GGAGCAGATTCTTCATCTACATCTGCTCATTATTATAGTAAAACAGAGAGACTTGCACAG
AAGGCTCCATCTTATGACAGGTCTCGTTGTGGGTACAAGAAATCTAGAGCAGGTGGTATC
CCCGAGGGAGATGCTAATACCTTGTTACGTGCTGGAGTTGTACGCATCGTTAAGCAGCAA
GGCTTTGAAATGCCTGTTGATGCAGATGGTTTTATTGAAGTCAGGTCCAAGAAGCAGATC
ATGAGTGTCAGGAGAGAGCAGAGGGAGAAAGAAAATAGATTGAAAATAAGGACGGCAAAG
GTGCCAAGTTATCATCCTTTACATTGGTGCCTTGTATGTATTTGTCTTCCTAAAATTAAT
GCTTTCGTGTTTGTTGAACCAGGCTCCCCGCAAGCAGCATCAAATGTCGCTACACAGTTC
TAACAGTTCAAGTATTTGTAAGGGGACAGTTTCTTTGGATGGAGAACCTGCGAAGAAAGT
TTCTTTGGGTTCTGTCCTTGCAGTTGAAGGAAGGGTCCTTGACCACGCCGAACCATCATC
TTCATTCATGAATGATACAGCTTCAATGACACCCATAGGGCGGCCACCTTCAGCCAACAC
AGGACCTCGTACAAACTACTGTGCAATGAAGTATGTAGCACTGTATCTTGGTTATGTTTA
TGCTATTTAACTAGGATTCTTGTTTATAACCTTGTTCAAAAATTCTTTTGCAGGCCTATC
GGAAGCCAGTCAACCTCTGACTTGATAACTTCTATTGCCGCAACAAAGCTTGCGGCATGC
TTCTCAGAAAGCAATAATAAAACATCGCCAATTGGCACTCCATTTAACATGGGCAACTGG
GATAGTTCACAAACGAACCAGCAGGTAGATTGCTTTCGCAAGTTTTTTTTGTCCCTATGC
GCAGATCATTATTCAAAACAGTATATGACGTGCCTTGGGTATCTTGGGGGTCCTTCATTA
TGGTGTTTCTGCTGACTTCATCTTCTGTGTGCTAAGTTAATGTGGGCAGTTCTGTGCTGC
TTATATTTCTGCAGGCAAAAGCATTTTATATCCAAACCAGATGGTTTCACAGTTTCCCTT
CATAGGCCCTGTTTGGATCCCACTGCTAGAGCTAGTTTGAGCTAGTTTGAGCTGAACTAG
CTCCCAAAGTATCCAAACACATGGGCTAGTTTGGGTTAGATGCAAACTAACCCATCAAAA
AAACTAGCC