| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_1560268
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_11059 |
5 |
1129 bp |
MLOC_11059.2 |
Available |
Available |
LOC_Os03g07190.1, FRAME:+1, EVALUE:7e-102, 13103.m00801 protein expressed protein |
| MLOC_11060 |
3 |
1436 bp |
MLOC_11060.1 |
Available |
Available |
LOC_Os03g07200.2, FRAME:-1, EVALUE:2e-125, 13103.m00802 protein expressed protein |
| MLOC_11163 |
3 |
1740 bp |
MLOC_11163.3 |
Available |
Available |
LOC_Os04g48260.1, FRAME:+3, EVALUE:1e-109, 13104.m04909 protein zinc RING finger protein, putative, expressed |
CDS Structure of MLOC_11059
CDS Structure of MLOC_11060
CDS Structure of MLOC_11163
Contig Sequence (5754 bp)
>contig_1560268 5754 assembly3_WGSMorex_rbca.fasta
TTCCACTTCCCCTGTTTCACGTCTGTTGCCTCCTCCCCCCTTCCCCTGCTCCGGTAGACC
GTAAAAATGGCCGCATCACTGCCGTCCCTCCCTCCGCCGCCGCCTACGCCGTCGCCGGCG
GCCACCACCCTGCCGAGCAACCTCGTCTCCTTCCCCGCGCCGCGGCCGCGCCTCGCGGCC
ACGCACCGCCGCGCGGTACTGGCCGCGGCCTCGTCCAGGCCCCCTCCCCCTCCGCCGCCG
TCCCCGGAGGGAGGGGACGAGGAGGTGGAGAGGGCCATGGGGATGGACGGCGGCATCCCG
GGAACCTCCGGGGAGCTGCTGCGCCGCGTCTCCTCCCGCGCCTACGGCATGCGCCGCCAC
CTCATGGAGTCGCTCGACTCCCTCGCCTACGACGGTACGAGTCCTCCAGAGTCCAGATCA
TTAGCCCTTTCCTGGATCGCGTTCTCACTGGCTCGATTTTCCCAGGGTATATCTTTAGCG
ATTTCAGTTAGATAGATTTATGGTTGGTGAATGGTGATCGGCAGGTTTAGGTTCCCGCGT
CTAGTGCTTGATGAAATGCCTAGTCGAAACTCCAGAATCCTGAGTACACGATATTTGTGT
GTACTTTAGAATTGCGTGCCGCGATGAACCTTAAGTTGAGCAAAGAGCAACTCCCGTTTG
AGGCTTGTACGTTCACACTTTACCCTGTTTCGAGAATTGCGTGCTTTGAGGTGGTATTGG
GAGTCAGTGGGACTGCGTATGCTCATATGTACACGCTATTATCAACGCTTGCAGTCACGT
TTCCTCATCTTTTTCGTATTGCCTTTGCATCGAATGCTGAATCGATATATCTGCTAGCTA
TGGTTGTGCTTGTGCTGCTTTCTGTAGCGCCGCAAACTAGGCCTAGTTGTTAAATGGCTT
AATGACTGAAGAAGGGTTATGAACTTATGATGCTCTCATGCTCACAAGTCCCAAGTCACA
AATAACACCATAAGGTTAAAACCATAAAAAGTGACCTTGTTCTTCCGTTTATCCAAGTAA
TCCTTGTGATGAACTAACAGTAGTTGTCCTTCAAATGCGGAAGTTTGAATGTTTACTAAC
TGTGCCATGTCGTCATGATGGTTCAGTGTTGGAGACAAACCCATGGAGGGAACAACAGCC
CAAGCCAGTCTACGTCCTGGCTAGAAGAGACAATCAACTATGGACGATGAAAACCCGCAG
GAACCGCAGGTTAGAATTTTTCTTGCTATTGTTAATGGTAATTAGTTGGTCATAATTGGG
TGGATTATGAGCACGGTCTCATCATGTAATATGCTCTGCAGTGAAGTTGAAAGGGAACTT
GGAATGCTTTTCTCAAAGGGAGGGGGCTCAGGAGTTGGGACTAAATCCAAGTACTCTGGC
TCCAAGTTTAGCATGGTCGTTGAAGATCTGACAGAGGGTGTGCTGGTGAGTAGTTAGTAA
AATGAGTGTTTGTTTAGACATGTTCTTGAAAGTCAGCCAACTGTCCTGCCTTTTGATGTC
CTTTGGTCTTATAGTGCATATTTTGGGTTCATTTTTTTCGACAAAGATATTTTGGGTTCA
TGGGAATGTGACTTCTAAATAAGTAAATGGGGGCTATAAAGAAGGACCAGGGATTGGTCA
AATGGAGCTGGATTAAATGTAGGGTATTCATTATATATATTCTGAAGAATGGTAGATTAT
GCATATTGTTCATGACTGTAGGGTTCCCTAATTGTATACCATATTACCATGGTCATCTGT
TTGAAGAACCAAAAGGACAATACGAAATTGTGCAGTCTAAGAAAGAGACTATTCAATATC
AGTGATGATGTATTTATGGAACTAGAAGTCGTCCGATGGAGAGTGTGTGCTTGCCGTCAG
GCAACATACACGGACTATAAGCGTTATTATAGGACCATATGAACAGTTCAACATCGATTA
ACCTTTCCACACCCCAAAAAAGAACGATCGATCTATCAATGCGGTGAACCTTATTTGAGC
TTAGCATACCGATAAATGTTTGCATTTTAAATGATTAAATCCTGATGTGGTATCACTGAG
CAAGAAACAAAGAACACATGAGGCTGTTTAGATGTATTGGATGGTTCTAATTTGCCGCTT
AAGGTGTATTCTGAATGGTGTGCTCTTATGTTGGTACTTCTAAAATGTTTGTGAATGTGT
TTCTACTTACTGCCACTCTCTTGACGACTAGCTTTCTGCATTTTTTTTTCACGTATCTGT
TTGCTTTATAATCTTCTGAATCATGGCCTCTTTTGTTTCAGGTGTTCGAAGACGAGGATG
ATGCTGTAAAATACTGTGATGTTCTACAGGGCGGTGGTCAAGGATGCGAGGGAATTGCAG
AGCTAGAGGCTTCATCAGTAAGAAAAACAAATGACACGATCTTCATAAGTACTAGCATTG
TTTGGTTGGTGACTGATGATACCCATCCTTGTCCGTAGGTTTTCAACATGTGCCGTCAAA
TGAAAGCTCTCGCTGTCCTTTTCCGGCGTGGAAGGACTCCTCCAACGCCACAAAGCCTTG
AGCGTGACTTGAGGGCGAGGAACCGGTCACTGGAAGACTAGGATCTTCTGAAACGCGGTG
TAGATATGTTAATTGTATTCTTCTAGCTGTTGAAGCACAGGCCATACGCCTTGTATACTG
AATGGTACATAGATGTTTGAAGCCACAAAGAAAATGATGCAAAATAACTGGTACATAGAT
TCAATGATAGCCAAGATGGAGTGGAAGTCAAGTCTGACAGTGAGTAGTACATATTTAGCT
TGAGATTAGCAATCTCTGTAAAACTGGATATTCTTGTAATTATTTACATTGTTTACAGTG
AATAAATGAGATTTTAAATTACTTGTATATTTCTCAGTCTTACCATCGTACTGATGCTGC
GACTTACATGACGACGCGAAAGAAAAGCTGCTATGTGATGACTATTCCCTCTGATTAATG
CTTCAGAAAAGTTAATTGATGTGAAGTTGGCTTGTCACCTGATGATACTCATAGTGATGC
GCATTCTAGAAAAGTTAACATGTCAGCTACTCCCTCTTAACCTAATTATTAAGGGTTCAA
AGGAATTTCATAGGATTTTTGAAGGGTTAGAATCCATAGAATTTTTTCCTATGTTTGTCG
TTTGATTCACAGGATTGAATCCACAGGTTGGTTTGCAGTTAGGGAAGAAGTATTAGCCAG
GAACGAACGAGGTCGAGTCTGACAGTAGTCACAGAAGTTATCCTGAGATTAGCGGTCTCT
GTATAACTGAATATTCTTGTGCCCATTATTTACAGTATTTACAACTATTGGGTCCTAAGT
TATTATCTTGTCAGCGAATAACACGATACATTAGCAACCTATTGATCTCGCGAGACAAGT
TGACGCCACCTGCAGGGGAAAACAAAAAGAAGAGAAGGAAAATGGCGTTCAGTGTTTCGT
CCTCCCCTCGGTGAGCTTCTCGGTGCGGTACTTCTTGAAGTCGGCGGCGAGGCCGGTGTC
GAAGTCGTGCTTCATCTGCTCCGCCAGCTGCCGGAGCACGGTGTCGCCGACGCCCCGGAT
GATGGGCTCCGGCACGAGCGCCAGCACGGGCGGCAGGTTGAACCCCACGCTCATCTCCAC
CTGGCCCCTCAGGCTCCTCCGCCCCTCCGGCTGCGGGTACAGCGTGCCCCTCACCGTCAG
CGCCATGTGCGACGGCATCGCGTCCCTCTGCAGCCCCTTCAGCTCGTAGTCCGTCTGCAT
CCATCCGCCATGAGTGAGTGAGGTCAGGCAAGGTTGCTGATGGCGATGGAGAAAACGAAA
GATGGCGGCGGTGCGAGAGTGAAGTGGTTTACCACTTCCATGAGGAGGAGGCTGGTGGCG
TGCACGGGGACGTGGGGCGGGTACCCCTTCCCGCCGGACCTGCTCACGAAGCGGACGGCG
ATCACCGGGCACGCCGACAGGAACAGGAACTGGATAGGCACCAGCTGCACGCTCCACTCT
TCCTGTCAAAAATTCAATCACCACGGAGGCGGCAGTCCGTCAGAGTTTCAGAAACGAAAA
CTTTGGAAGGAAATGGTATGGTGAAGATCACCCACGTCGTTGAGCTTGGTGCGCTTGCGC
TTGTCGGGGAACACGGCGCCGACGATCCTCGGCCTGTTCATGAGGTACTCGTCGATGGAT
GCCTGAGCAAAGATAGAACCGAGGCTCAGCTCAGGGGAATCAGATCACCTCCCAACAAAG
AAAGAAACGACGGCTTACGTACCCCTGGAGTCTCGCCCATGGGGATGTCGGTGTTGAACC
TGTAGGAGAAGGTGAAGAGGTCCCTGGGGTTGGGGTTGACCTTCTTCTCCTTCTCCTTCG
CCTTGCCGCCGAACGACGGCGGCGGCTTCAGGGAGCAGGTGGTGACCCCTCTCGACGACG
ACGACGACGATGAGGCGCTCGGAGCAAAACCATTTCGTGACCTCGATCCGAGTGGTGTCG
CCCTGACGCCGCCGCAGCCCGTGATCCTGCCGGCACGCGGACGAGCTGCAGCATGCCGGC
ACGCCGTGAGGCTCAGCGATGTCATCCTCCTCTCTCCGCTCCGTGTTTTTCTGATCTTAT
TCGGGAGTTGGGAGCCCCTCTGCTTGATCGCCGTCGCCGTGCCAATAAGTAAACCAGCCC
ACGAGGCACGGAGCAGGGTTGAGCAATCTTGCAAGTAAAGGCAACGGGGGTCCGTCCGGT
CCCGGTAGGCCCTACACGCCGGCCGGCCGGCTTCTTCCGGGTCTTGGCAACAGTTTCCCA
AGTTTGTTACAGCGGAGAGGAGAGGTTTTCAACTCTGGGTTGCTGCGCTGCGCTTCAGCT
GGGAGGGATATTTGTGTCAAATTCAGTTCAGATTCAGACGTGGGTGCGTCTACTAGTGGT
AACCCTGCTGTATCTACATGCAGATGAGTACATGTTTGCGTCTCGTGTTGTTCCGTGGAA
ATGAAATTGACCCCTGTTTTGGAGGCAGACGGGGGTAGGTTTACACGTGAAACCGAGGGG
GTCGGTAAACCAAATCCGAGGTGTCCCCTGCGTGCACGTATGCCACGGCCTGGCGACCAC
GCAAAAGGGACACGAACGCATGCGCGCACGGCTCGGCAAGCATAGGAAATGCGTCCGTCC
GTGGTTCTCCGATGCTCCAGCTCCAAGGCTGTAGAGTTTTGTGCTGGTGTGGTGTTCTTT
AAACGTGGCAGAGACCAAGTTTATACTGCTAGGAGTACACGTTACAGGACTGTACAATCT
CATCTAACGTTGCAGGTCAACCGTCAACCAAGTTTGCCACTACTTAGTGACAAACAAATA
TGAAATATCTCTCATGTACCGTTTACGTTCAACGGAACACAACTTTTTCTACTTTGTGTG
CGCGTGCGACCGGCTTCCATTTGACTTGCTCTTCGAGAGTGCGGATTACTTCCTTTTTCT
TGTCGGGATACATGTAGTGGTATGTGCAAAATCCACTATGTCTTAAATCTGTGATAAGAG
AGTATATGGTTGTATCAGATGAAGTAAAGTTTTAAATAACACGCTATAACGTTTAGAGAG
GGCCGCCGCTAAAAGGCATATACCCCGTCATTTCAAAGTTCAAACTAAGATAAAGACATT
CCTTTTTCAAAAACAAGTGAGCCTAAGACGAGGTAGAACGAATCTTAGTCTATCATCTGA
TTTCTAAATAATCACGATACTCAACATCACACCCCCCCCCCCCCCCCCNNNNNNNCCCCC
CCCCCCCCACCCCCACATCCCACCCACCACCACGCCCCGACACTCCCACCAACC
