morexGenes - Barley RNA-seq Database

Contig contig_1560255

Source Contig contig_1560255

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1560255 (4618 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_1560255

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11049	1	781 bp	MLOC_11049.1	Available	Available	LOC_Os12g07020.1, FRAME:-2, EVALUE:6e-22, 13112.m00727 protein 5-formyltetrahydrofolate cyclo-ligase, putative, expressed

CDS Structure of MLOC_11049

Contig Sequence (4618 bp)

>contig_1560255 4618 assembly3_WGSMorex_rbca.fasta
CCTAGCGAAAGCAACGGATCGGCCAGTGCACAAACAAGCTCGTGCAGCAGCCGTTTTATT
TGCTCTAACTGAAAACTAAACTGACGACTAAACAGGCGCAGGTTTACAGAGACAACACTC
CCCAATTGTGTAATGTGACGTATGCGCGGCTGGTAACAGCAACAACAATAGACTGCTAGT
TTTCGTGGTGGGGGGCTCCGTGGAGGGAAGCGAAAGGGAGACAGGGAGAGAGCGAACCGA
ATCGGCAGCGGCGGCGGCGCCATCGAAGTTGGGGATGCGGTGGTGGACGGGGCGGGGGTT
GCGCGCGACGCCCTCGGCCTCCAGCACGTCCCACACCCGCTTTCGTATCTTCCACTTCCA
CGCCCTCGGGTCCGCCACCGCCTGCGCCCCCGCGGCGGTGGTCGCCATCGAGGCCCGCGC
GTCGGCGTCCAGGCGGAGCCGCTCGGCCTCGAAGGCGGACTCGTCCAAGGACGACGACGA
CGACGACGAGCTCCTGGACGCCACAGCGACCCTGGCGCGGCGGGAGGACGACGCAGCGAC
AGCGGCAGCGGCGGAGTGTAGCGATAACGACGGCGAGGCCGGGAGGAGTAGGGGAGGCAT
GGCTTCCGCTACCACCACTCGCGTGTGTGCTTGTGGATGGTTAGCACGTGCACACGTGCA
CTTGGGACTCTCGTTGTGCTGCTGGCATGCGCGCCCATACCGCTCTCGCAGCGAAACAGA
TGAACGAGCCGTGGGCCATCTCCACTAACTACATCGAGCCTACGAGGGCATCTTCAACGG
CAACAGTCCTAATGTAATGCTTGTAATTACTTGTATTAGTGTTGTCTCAAAAAAAAATTG
TTGTATTAGTGAGGATCATGCATCGTGTTGAATTCTAGTAGAAAATTGAACTGAGGAATC
TTTAGAAGCCTCGACAAAATGTAAAAAGGACAAAGAGCCCCCAAAAAACTGCATTCAACG
TTTCCAGAATGCCTTTCAAATAATTCTGAGAATTTTAACAAAAACTATTTATCGAACCAA
AATTTAAAACAATTAAAATATATATTTTATGCAGTTGAATTTAAATCATATTGTATCCTG
CATTCGTTTGTGGACACTGCCATAGTACTAATATAATGCTTGTAATTAGTTGTATTCGTG
AGGATCAAGCATCATGTTGAATTCTACAAAATTGAATTGAGGAATCTTTAGAGGCCTCAA
TTTTTTAAAAAAAGAAGGGCAAAGAGCCCCAAAAAACTGCATTCAACGTTTACAAAGTGC
CTTTCAAATGGTTCTGAGAATTTTGGCAAGAACTATATATCAAACCAAAAATTTAAAAAT
ATTTTTAAAAATATATTTTAGCAGTTGAATTCAAATCATATTGTATCCAGCATTCGTTTG
TGGACAATCCCACAGTCCTAACATAATGCTTGTAATTAGTTGTATTTGTGAGGATCCTGC
ATCATGTTGACTTCTACAAAATTGAATTCATGAATCTTTAGAGGCCTCAATTTTTTTTAA
AAGAAGGGCAAAGAGCCCCATAAAACTGCATTCAACGTTTCCAAAGTGCCTTTCAAATGG
TTTTGAGAATTTTGGCAAGAACTATATATCAAACGAATATTTAAGAATATTTTTAAAAAT
ATATTTTAGGCAGTTGAATTTAAATCATATTGTATTTGAATTGGCTTTATTTCTATTATA
AAAGAAATACATTTTCAATAACTCTGAAACTTAGTGTGTAGCTTTGATTATATCCATCTA
ACATGCATATAAATTCTTAGAATTTTAGAAACTGATTTGGTGTTTCAATCTGATCAAAAA
CAATTGCAGAAAATAGAAAAAGAAAAAGAAAAAGAAAAACAGAGAGAGAAAAGGACTCAC
CCGGCCAAGGTGGCGGCCCAGCCCCCCAGCGCCTCCCATGTCGTCTTCCTCCATGGGGCA
GTAGGACTGGGCGCATGGTCGTCGCGCTTGAGCACGCGCACCACCTCTTGTTTGCTTGTG
TCCTACCCATTGCCTCTAAGCACGCCACCTACTCACGTGTCCTCTCTCTCTCTCTCACCC
GCAGCTCTCCCCTCCACGTTGCTCTCTCTCCCATAGCCGCCCGAACGAGCCAGAGCGCGC
CGTCGCAAAACACCACAACCACCGCCCATCGTTTCGCCCAGCCATCATGTCCATGAGCTT
CGTTGCATCGTTCTTGTCCTCTCCACCAATGGGCTCGAGCCGGAACAACCACAAGACGAC
ACCCGCGACCATCTTCCCCGTCCGCGTCCACCGGATGCCATCACCCGATTCGTCTATTCC
TATTCGCCCTCGATCCCTCTGAGCCTCTCCTCCAACTCGCGATGAGCTCCTCTTCGTTTC
TTCCCTAGCCCCGTCGCCCCGCTCGTCCTTTCGCGCTAGCGACACCATGGCCAAAGCTTC
CCGCTGATGTCCATGTCTGTGCCATGCCAAGAGCTTGGACCTAATAGAGGCAAAGGTGTC
CCTAATGACTATGGTTTTTTTAAGTAGACTTTGATGATCTGATTAGGAACGTGCGAAGAC
ATCGTGCCTTAGCAATTGTTAAACCAACTCTGAGAGGTTATTGATCACGCAGGAGCACGA
TCAACCTAGCTACGAAGGTCTATTTCCTGTACGCAAATGAATAACAAGTAATAAACTGAA
ATTGCAATATGTATATTGCGAATATAAGAGAAAAGTTTTATTAATGAAAGTGAAATTCTT
TGACATCTTGGTCTGGCCATGGAACACAAATGACGGACGTGAAGTTGCAACTATGAAGAA
CTTTTAATCTAAACAAAACTCAATTCTAGACGAGGCCTTAATGGTCATATTTGTAGGGGG
AAATGGGAGGGGATTTCGTTCACCCTTGGCAAGGTGGGAATAGAACACCTCCCGAGTCAT
TTCCCCTACAATACGAACTCTATAACGAGCTTAGGAAGCTGTATTTCAAAATTATATGGG
CCTGACCCAAAAATAAGGTGACGTAGCACCTATAATAAGCTATGGCGGAATTTATGAAAG
GGCATCTTGTATATTTCGTCCATGTCCTTGCATCTCATCAAGGAGGCTTCAAAGTGCTGA
AATCTGCACCAGAAACCCTGTTCTTGTTCCCTTCATGCGCCATCTCTATGCTCGATCCTG
TTCCAGTGTTCATACCTCTTGTCCATGCTAGGTCCTTCATTAGTAATCAACATAAATGCA
TCCAATTTAGGCATCATCATATTCTCATGAATATTATAATTGTTACCATGAAATGAAAGT
ACCTTGTAATTTAATTGGTGTGCACGAGCTCTAACAATGGTATTGATGTCCTTGTTATCC
TTCCCTTATTGAAATGAAGTCGTCCTCGATGGAAGCTCATCTTCCTCTCTTGAATAAGGC
TTCAAATCTACAATGTTAAGAGTGAAACTAACCTAAAATCTATAGGCATATCAAGTTTAT
ATGCATTATCATTTATTTTTTATAACACATTAAAAATACCATCAACACGTGGTATTAGCT
TTTATTTGCGCAAATCAGGAAACCTATCCTGACGCGAATGTAACCAAACAAGATCTCCAG
GTACAAAGACAACATGTTTTATACCCTTATCTCGAGCAAGTTTATATTTAGGATTCAACT
AATTACAAGTTTATATTTAGCATTCATATGCTAAATGTTTTCCTTCTTTAACTCATGCAC
TTTTAAGATCAATTCATCACATTGTTTAGCATAAAAATTAAACTTCTCCGAAGATGAAAG
AGGCAACAAATCAATAGGTNNNNGAGGTAGGAAACCATACACAATTTTAAAAGGGTACAT
CTTAGTAGTAGAATGCAGCAAACAATTATCAGTAAATTCAATATGAGGCAAGCAGTGTTC
CCACATTTTCCTTTTATTCTTCAAAACAACTGTAAGCATAGTAGACAATGTTCTATTGAC
TACTTCAGTTTGCCCATTGGTTTAGGGGTGACATGTAGTACTAAAAAGCAGTATAACTTA
GCCCATAAACATCTTCAAAAGTGGCTAAGAAATATAGTATCACAATATGAAACAATAGTG
TTTGATACACCATGCATGCGAATAATTTCACGGAAAAACAAATAAGCAACATTAACGGCT
GCATCACTTTTATAACAAGGTATAAAGTGTGCCATTTTCCAAAATTTGTCCATGACAACA
AATATGTTATCCCTCCCTTCTTTGTTCGAGGTAAACGTAAAACAAAATCCATAGATATAT
CCTCCCATGAAACACTAGGTACATGCTAAGGCATATATAAACCATGATGATTGAGTTGTG
ACTTAGCATTTTGACAAGTAGTGCACTAAGCAACAAAATGCTCAACATCCCGTCTCATCT
TTGGCCAAAAGAAAGGTGTAGTAAGTACGTCCTTCATCTTCTTCACGCCAAAGTGTCCCA
TTAATCCTCCTCCATGCGCCTCGTGCAATAACAAAACACGAATGGAGCTAGGTGGAATGC
ATAGCCTGTTAGCACGAAACACAAATCCATCATTAATGATGAACTTGTTCGATGTTCTCC
CTTCTTTACAATTCTGCAACACATCTTTAAATTTAGAAGCATGCACATATTGATCTTTGA
TGGTCTCCAAACCAAATATTTTAAAGTCAAGTTGTGAAAGCATAGTATAACGACGAGA