Contig Data
morexGenes
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Map Locations of contig_1560214 (4006 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1560214

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11027 1 719 bp MLOC_11027.1 Available Available LOC_Os02g44880.1, FRAME:-3, EVALUE:2e-60, 13102.m05028 protein expressed protein





CDS Structure of MLOC_11027






Contig Sequence (4006 bp)

>contig_1560214 4006 assembly3_WGSMorex_rbca.fasta
AAGCTTGAGCCAATATTATTCATTTCTTGTATCGAGGGGTATCTCCACACCAACCTTAAG
CCATAGCATCTTTTGAAATTTTCTGAAATATACTTGGAAAAACACATTAGTCCAATGATG
CATATGTTGTAATCAATTATCAAAACCACCCTAGAGAGCAATTGTGCTTTCACGTGATAA
GTCGTTTCTTTCCATCTTCCTCACATAAGCTTTTCCCGACATCTTCTCCAAATCCATAGA
CCAGCTTTTCGGAGTGGCAAACATAATAAACTTTGGTTTTGACTCCAACCTAAAAAAATG
ACTCACGTTGTCACCTTACAGGAGATGTATTTCCTTTTGTCTTTATTGCGGGATTTCTCG
TCAACGTGAGAGTTGGATGTGCGGCTCCTAATTGGTGGAAAACTCTTCTCCACCAAACCT
TCTCCACCAAAGAGGCCTATGAGTTTCGCGGTCGTCTCAATTCTATGGCAAACCTTGATC
ATGGAACGCCACTGACACCTCAAGATACCCAAGATGCTAGCAAGACCCAGAAGATCTTGA
CTACATCTTCATCCATTATCCCTTATTCACAAGAACTTGGCAACGCATTGGCATGTCCGT
CATAAACACCGTCGAAAATCTTTCGGATTGTGTGCTCCCGCCAGGACGGAACCATGTTTC
TGGCCCTTTATCCCACTCATAATCCTTTAGAATTTCTTTTCAAAATTGTGGCAATGCCTC
GTTGATTAATTTGTCAAAAGAAAATTGACGAAAATCGAGGCGAAAACCATTACGACGTGG
TCTTATCCGGACTATTCTCAAAGCATGAATCTCAACGAACACCCCAACAAATGAGCAAAC
ACCACCAATTCACAAACCCCCACGGATTACAACATTGCAAAACTAATCACTCATAATCAT
TAGAAAGACTGGAACTTAAGGAATGCCCTGACATTCAGGGGGGTTGGACATTCACACGGG
CAACACCCTCTTGCGACAACTTAACCTCTATTCACGTGTAGACCTGTCTATGTAACCCTT
CATGTGTAATATTCAGATAAAGATACACAGCGCCCCCAACATGTAGAGGAAGATTTCGAA
AGTACTAGCGAGTGACTAGTCGATTGAAAACGTTCTAAGATCAGTTTTTTTTCTCGACAA
ACTTGCACCTCCTCCACACTCCTTGATATAGATGATGATGTCGCCTAACACCCTAAGATA
GATATCCGGTTGACTGTCATCTTAAGATAGACCCAAAGGGCTTTTCCAGCGAGCTTCATC
GGCTATTCCTTCATTCACGCGAAACTCAACGGACTTAAATTCCAAATTCGGATGACTTAG
AGGTAGCTAATGTGCTAAAGATAATAGAGCAAGAAAATTTATCTGCAAACTCCACGAAGA
CTCGGAGGAGTCTGTCTTTGGCCAGGGGAACCACGGAGCGTCCGGTCGGGCACCCACCCA
ACCAGCGGCCCTGCACGGTCGCATTTTCATTTTCATATTCCGACGCCACGGCGACGCTCT
CCGCCTCGCAGCTTCCTTCGCATCGCGGCGTCGCTGAACGCCGATCCGCACGGAGGAAGT
AGAGTAGGAAGCTGACGACGGAGACGGATGCTTCTTCGTGCGAGCGCGGAGCGCCAGCTA
TTCGAATCCTCGATCGGCCACGTCCGGGCATTTTGAGCTGGCGCATCCTCCCAGAAGATA
CGGAATCTGCGTCCTTGGCCTGTTGAAATCTGACGGCCACATGCGGCCGAGTACCCTTCT
TTCAAATCTTTCATACAGCACCGGAATTTGCAGCTGTCCAGTCGTGCAATGTACTCTGTA
CGTGCGCTCGGCTCAGGCCCTGCTGAACTGTTTTGTTTTTAACAACTAGTCTGAAGCAGC
GGCGGTACAGCAGCGGCGCTTGGAAGTTGGAAGGCAAATACGCAAAATTCGACGAGATCA
CACGCGATTTTTGGTAACTAAATTAAGTCCATGCTCCGCCTCCGCCTGTCGACGATGCAG
CCTACATCGTGTTTAGGTTACACGCTGACGGCTTTTCGCCTTTCGGGCAACAGACGCGCA
ACTCACGGAACGTCAGAGCGCCGTCCATTTAGCGGAATCGACGCCACTTTCAAGCAGCTG
GCGACGTAGTTTCAGTTTGCTTCCGCGAATGGACAGGTTGCCACCTGGTGTATTATCTGA
GGAAGGGCGCATGTACTGACGTACATACTTTATGTGCTCTTGCTTAGGTTATGTGATTTC
TTATTATATACTGTCACGCGCTGATTAGAGTAATAACCACCAAGTTTGCCGTCCTTGCGA
CAATGACCGGCGATGGAATGCTTACTACAGTTAATAACAAAAACATCGCATGTACTACTA
GCCTGTTGAGCCCTGGATGTGGCGGTTGTCCAGAGGAAGATGTCACTATTTATTTATTTA
TTTTATAGATAAACCTTAATATAATCTCTGGAAAGTTTCATTTCGAAACACACAACACAT
TGCAGGCAAACCAAAAATCACAATGAGATTTGCCATTTGTACCTCGATCATCTGGCGAAG
CATACTAACGGAAGCGAACCCCCTGACCACAACAGAACTTGGCGGTGGTAGTACCAAGAA
GTTTCATGTTAGCAGACCCAATAGAATAAATAAGAGAGCTCGGTCATTCGCGAAACTCTT
GATTCCTTGCTGCGTCGTGGGTTGGGGTTGTGTGATAGACTTAATTAAGTTGCCTCCCTT
GGCATTTCTCCCAAGGACGCACGTAATGCGATTCAACAGATTCCTCGAACACTCAAAACT
ACCTCCCCACACGCACACCTACTGGCAATACACTAATCGCTTCCGTCGTCGCCGATCACG
GATCACCACATTCAGAGTGGCATAACAGAAGGTTCGCCACGGAGGCGTGGCCAAATCTCA
ACGACTTTGCATCGCACGTGGTCTTATTTTGGGATGCCATCTCCTTGCTGTTGCCAGCCA
CGAACCCTGGCGGCCTGCCTCGCTGCCCCAGGACAGCATTGGACTTCAAACCTGAGGCTC
CGCATAGATTATCTAAGCGGGAAAGGAAAACGGCCAGAACGGGGGGAGAAGATCAGAAGA
GAACCACTGCCATAGCCACGACGGCGTTCAGATCATTCGATTGCCGTGATTGGCGCCAGC
GTCGAGCGCCCTACGATCGAATCGTGCTGGAGAAAGCACGCCCAAGATCGCCATCCCGAT
CTCATATGATTCCATCCACGTGACCCCCCCATCCCAACCAAACCAACGTCCCAGCCAAAA
GCGCGCGCGTGTCTGGTCTTGAACTCCCGCAGGCGGTTCATTCAGGCTGCGGCCTGCGTT
GCCAATTGCCAAACGGTCGTTTCTGAAGATGTTTTTGAAAGGGAGATGCAGCAGAGTTTG
CAACACAAAACGGAGATCTCTTTCACTTGGGCTGCAATTCTTGGTCTACCAGTAATAACA
GTGCTAACCTAAACACAGGCAGAGGAGGCACCATTGTCATCTCAAAACTCCCCATTTCTA
TGTACAAATGTCACATAAGAAGAAATCTTGATGGCTCCAGCGGCTGGGGGTTCTTCTTCT
TCTTCAGAAGCCTGGGCTGAGAATGTTGAGCAGGGAGACTCTGGTGTTGACGAGGGCCCG
GAAGACGCTCTCGCCGCTGTTCTCCACGTCCGCGATGCACCGTCCGAGGTTGTCCATGCG
CTCAAATGCCGCCTTCCGGTCCTCCTCCTCAGGGTCTAACTCGACCACGGCCGCGTCGGG
CTGGGGCTGCTTGGCGGACGAGCCGTCGTCGTCGGCGTGCTGCTTGTTCGCCGACCGGCG
CTTCGCACGCGACATCCAGCGCATCAGGTCGGCGACCCACCATATGCGCATGGACGAGGG
CTTGGTGGTGACGACGTGGTGGCTGCTTCTTGGCGTGGCTGACGAGGAGGCGAACCTTGC
GGGAGAGGGCATCCAGCACGGCGCGCTGACGACGTCGACGCGGGCCGTGGCGGCGGCGAT
GGACAGCGAGGACACGCCGGAGAAGACCGCGGCCGACGCAGACGCG