morexGenes - Barley RNA-seq Database

Contig contig_1560201
Source Contig contig_1560201
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1560201 (7395 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_1560201

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11017	1	999 bp	MLOC_11017.1	Available	Available	LOC_Os04g39960.1, FRAME:+3, EVALUE:2e-12, 13104.m03877 protein hypothetical protein
CDS Structure of MLOC_11017

Contig Sequence (7395 bp)

>contig_1560201 7395 assembly3_WGSMorex_rbca.fasta
GGATGCCTCCGAACAGACACCTCTTCTTCGCATCTCTTCCAGATGTATATATACTTGAGA
ATCAATAGAAAGAGGACTAATCGTCCATTCACTTTCATTCAATATCGTTTCACTTTAACA
AAAACGAAGGCAATGGTGGCTCACCGAGGGTACAAAACGAAGGCAACGGTGGCTCACCGA
GGGTAACGGTCATGTGCACGGAGCTCAGTATCGGCGGGGCGGCGGCTCCGGTGGGTTTGG
GCGTGTGCGGAGGTGTAGACGACATGCGGTTCTTCGGGGGCGTCGCGATGGTGGTTACGG
AAGTCGACAGCAGCGTTCGGACGAAGCGGAGGAAGGCAGCGGAGCTCCGTGCTCCGACGA
ACTCCGGTGGCTTGGGGTCGAACTAGGCATCGCTTTGACGTGTCCTAGGAGGGAACAATA
TGTCAGGGAGGTGCGAAAGAGATCGGAGATCCGATTTCTCAAAGAAAAATAGGTCATGGC
CGCTCACTGGCGACGTGGTACTTCGGCGAAGAGCTTCGATCAGCAAGATGCAAATGCCGA
CGACAGTGCCTACGAGTGGCATGGGGACGAGCAAGACAGCAGAACGGGTCGAGGGCCTTA
TATAGGCGAGGCTAGGGCGTGCGGGGCAGCGAGATAAGCCTCTCCCGAGAGCTTCGACCG
GCTGGTGCGGCCGGCGCGCAGCAAACTCTATCCCGCGAGATGAGCGGGAGCTTGGGGATT
CTGGACCTACCTGGCAGCGTGAGAGAGAGATATAGAACGAGAGGGAGAGAGATCGTCAGT
GGGGGGACCCACGTGCATGGGGTCGCAGCAGCTCCGTGGGAGCGAGCGCTAGGCTCCTCC
GTGCGCTAGGGCTAGTGCCAGCTGGCTCGGCCGCGGCCTGGCCTGGACTAGCCCGCGGGT
GGCCCTTTTTTTGACCAGAACAAAACGGAGAAAACTAAATATTACTATAAATGCAAAAAA
CAACAATGGGTATTATATAAAAATGATCATAAAAATAAATCCTAAAAGATGAACTTTTTT
AGAGGCAAAATAAATACTTTATAAAAATCATTTTTTCTGAAAATTCAAATAAAACCAAAT
TTGGCTTTCAAATAATTTGGCACTATTTTCTTCCGACTTTTTGGGGTGTCATGTTACCTT
CTCTCATACTTTTTGATCAAAGTATTTTGTCAAGGATTTGTGAATATAATTCAAATGCCA
AATTGAAATGAAGCCAAATCCAAATTGAAAATTCCAATGCCACTTTCCATTTCAATCAAA
ATGCATGGATGGTTAACTATAATTTTAAAACATTCCAAATTACAAATTTGGGATGTTACA
AGTCATCCAAAGAAACTTCAAGATTGCAAGATAGTGAAAGCGTATTTTTGTGTGGAATGG
CAAGGTGAAATTGTATAAAAGAAACAAAGAAGATTGCTTCACATGCTTAACTCGAGTTAT
CATGATTTTTTAATTTTCCCCTCTAGTAACAACATCATTGATCCCATGTATTTATATATA
CTCCTAAACTTATGTCTTTATCTAATTATAAGGAAGGTATGTTGTGTGTTTATTGATTGT
CTGGTCTGAGACTAATTTTGCCAAATGTTGCCACACCTAAGTTTAGGAAAGATTAACCAA
CTTAGGTGGATGTTTAGTTCAAGCCACATTTTAGACAAGCCACGCTAGAGTCCGACACAT
ACACACAGAATACGTGGCAAGTTTTCATTAGGTTTGCCAACTTGTGGCTCTCATTTGGTT
AAACTAACCTTAAACAAGTTTGGCAAAAAAATATGTGGCACGGTGTGGCAATTCAAGGTA
TAGAATCAAACAGCCCCTTAGAATATAAATACATGGAATATAAATATATATGCCCTTGTT
GTTACAAGGGAAATGTAATAATCTTTATCCCTTGTACACATTGTCTGGTTTGTATTCGTG
GTTCGAGCATGATCCTTTGATAACATGTTTTGTATTTTCATATGTAGCAGTGTAATATTT
GCTAGATGTCCTATGGAGGCCATTGAGAGGGAGGGAGGGAGAGTGGGGATGGAATTGTGA
GGGTCCACCTAGACATAATAGAAGGAGAGAGTCACAACTACCCGATTAACTAACACATTA
ATATTCAAAGTGTGGTATGGGAGGTGGTTGAAGGGGATTGTGAGCCGGATGCAAATATGG
TACATGTGGGAAGGGTGGTGGAATTGCGAGTGTTTGCTTAGACATAATATAAGCAAAGTA
CCTGTTTACCTAATATATTAATATTCAAAGTGTGGTACAGGAGGTGGTGGAAGGGGATTG
TGAGACGGATACAACTTTGGTACATGTGGGGAGCTTCAATTTGCATGGTGGAGAAGCAAG
TGTAGTGGGTTAATGAACAAAATAAGAGAAAGAAGTAGAATTGTTTAATATCAATAATAA
AAGTTGAAACGCCGGTTGATTCACGAGTTATAAACGCCAAGAATACCAATTGATCTGCAT
GGTAACTGAATATATATATTTTGATACTTCCTCCGTCACAGTTTAGAAGACACAGTTAAA
TTTACGTGCATTTTCATAATAGATAAGGTTTAGGGCGCATTGCAATTACTTCTAACAGCT
AATTAGTACTTCGGTGTACTACTTCTATATGCATGCGTAGTGTGAATGTTATTTTTCAGC
TCATCTCACAGCCAATCAATAACTACCTTGATTTCAGTAAATTTTCAAGCACGTCTTCTA
AACCGTGACGGAGTGAGTATGATTAGTGATGAGCCATTAGAATATATATGCACCCGTAGC
AACACACGTGCCTTCTATTAGTATAATGTAGTTGTTGATTTATCGATTGTTGATTGTTTG
TACGAGCTAACCCGAATTTAATGGTTGCCAAAGATACACTCTTGATTGATTTGCATTGAT
TAATCCGAATTAGTTGGTTTCCAAATATACTAAAGATTTATTGGGTTACAATCCTTTGAT
CTAAATTTATTAGTACTGATTAACCCGAATTTAATGGGTTGCCAAAGATAGCAAAGATTG
GTTTTTGTTGAATTTGTACCAATTAATACGAATTTAATGGGTTGCGAAAGATACCAAAGA
CTTATTAGGTTACCTGCGATTGTCTGGTTAGGTCAGTAACATGAAAATCATGTGTTGTCG
GACGGCGACTTCTATCGATTAATATGAACTTACTACATATATTAGGGTTGTCCCGTTACT
TTCTAGTTTTTGAAGAACCTTCCCAAACCGGGTTTTTTTGTGTGTGTGTTTTTTCTTGCA
ATTTTCCTGCTTTTATCATTTTGTGTGTTTCTTTTAAAATTTATGTTTTTATTTTCCTTT
TATCATGTATGTTTTTCATTTTCACTTTTTAAGTCAAAAACATTTTTTAATTCGTGAATA
GTTTTCAAATTCACAAATATTTTTAACAAATCCATGAACATTTGAAAAATCATGAACATA
ATTTTAATTCATGAACATTTTTACTACTAATTCCTGAAACAAATTGAGCTAGTGAAAACT
TTTTGAATCAAAAGAACATTTTTGAAAATTGGGAAAACATTTTTAAAATCACGAATATTC
TTTTGTTCTGATGAACAGTTTTGAAATGGCTGAATATTTTTTATCAGCCAACAATTTCTG
AATCAATGTACTTTTTTTGTAATTTGCAAACATTGTTCGAATTATATGAACATTTTCTGA
ATTTATGAATAATTTTCAAATTCATGAATATTTTTTAAATACATAAATATTGTTTCATAG
TCGTGAACCATTTTTATATTTCTCGGGCATTTAAAAATAATAATTATCTTGTTTTGAAAA
TGCGAACATTTGTTTCAAATGCTGATCATTCTTTTAAATCTGTGAACATTTAATGATTCC
ATGAACTTACTTTTTCTAAAATACAAATTTTTAAATTACAAAACTTGAGCTTCTATCTGC
AACAGTTTGCGCTGAATAGGATCCCAACGATCGCATATACATCCAGTTGTGTTGGCCGAA
TAGCGGGAGCGCTGTACAAAATTCTAGATATTATTGCGTTCGTTGGGGTCGAACACATGA
CCTTCAGTTGTAACACATACGTGCCTAGACACTAACTGGATCGAGCAAACTTTCATGACT
AATAACTGTAAATGAACATTGATTCGAAGGTTTTTACAGTTTTGAACATGTTTAATGTGT
GAAAATTTTGGATACTTCTTGGCACACGAGCATTTTTCAAAAATGTGTTTTTTCTGAATA
CAAAGACAATCTTTAAAAAAATGGAACACATCTTGGAATTCGGAAAGATTTTTTTGAAAA
ACTGAAAAAAATAATTAACTTAGGAACAAATTTTGAAACCCACAACTATTTTGAAAACTT
ATAGAAACTTTCAAATTCTGAAGAGGTTTTGAATATGCGAACAAGTATTTGAAAATATAA
ATAATCTTAAAAGAATGGGAAACATGTTGAAATTCTTAATTTTATAGAAAGATGAGTAAA
AAACTGAAGTCACGAACAATTATTGAAAACATGAACACATTTTGAAAACATGAACTTTTT
ATAAAACAAGAACACATTTTAAATTTGTGAACATTTTTTATAAAAATGGAAGAAAATTTG
GAACGTCTAACTTTTTGAAACACAAACAAATTTAGAAACTCTGACATTTTTTAATAGAAA
ATCATTTTTGGAAAATATGAACAAAGTTTTGGAACAAACTTTATTTTTTCTCAAAACATG
ATCAAATTTAAAATGCATTTTTTATTTTTAAAATGACAACAATTTTCAAAAACATGAGAT
GACAAACAATTTTTTAATATGTTGAACTTCAAATAAATGTTTAGAAACGAGAAAAAAAGT
AAATATAAACATGAAAAGGAAACAAAAATAAAAAAAATAAACAGTAAGAAGAAAAAAAGA
AATGAAAACAGGAAAAGTGTTAAAAACAAAAGAAAACCGGAATAAACTAAAACGGTTCAG
GGACCTTCTAGGCTGTTTCCAAAACTGCCTAATTTTCGAGGGAGGGAGGTTACCTGCGGG
AATGCTAGTAGGCATCAAATAGTATTTTCCTCCCTCCCTCGCCGACAGCCCAGACCCACA
CGCCAAAAACCCCGCCAACCGCTAGCCGAACCACTGCGTGACTCAGTTAAAACTAGGAAC
AACCGACTGAATATATCGACTAGGTCGTTTTTGGGAGTTTCAACCCCAGGACATAGTGAT
TTTAAAGATATGTGTATATTTCATAAAAGCCATTCATAAAGTTGTCTCCCCAAGTTTAAC
GAACTTGTTGTTGTATCCATATCGAAGTTGTCAACCGCAACACCATTAAGAGAGAAAACC
TGTCAATGCGTAGGTTCTAATTTGATAATCTCGTCGAAACAAAGCAGGCCATGAAGATAG
ATTGCAAATCCGAGTAATGGTTTGAGAGAGATATCATTTTCATGTTTCGAAAGTAACATT
TAGAGCGCCAACATCATTGCTTTTGTCGCCCATAAATCTATGCATATCACTCGTGAATTG
CCCTGCTATATTTTTTGCCCCCTAAAATTAACATGTATGGTCTTACATCCGATAAAAATA
TGAAATGTGATCATGACGAGCACATCTAAGATCTAACCCTCATGCTCTAACTATAGTCAA
TATTTATTGCTTGATTTTTATTTGAGGAAAGATTAAATCAAGGAAAATATATTTGACAAA
CACTCTTCCCAAGCCGTCGGCATTACAAGGTGTTTTGTTTCTTCCAAAGACACAAATCAT
CTCTTCTTTAACTATCCGAAAGCCATGCGGATTTGACAACAGCTCACTTTTCCGCCGCCA
ACTTGGGGGGGTGCTACGTCAGAAGCAACCACCAATGCTTCATTTAGGCAAACGCGCCTC
TCTCAATTCTCTGGACTATTTGGGACTCATTTTTCTTAGTTTCCGGGAGGGACTCAAGAA
ATGCTTAGGTGTTTTGAAGCCTAGATCACCGTTCCCCTCTTATATCAGGAATATATGCGG
ATTCTAATCCGATGCTATTTGTTTGGGCCAAGCACATTTGTGAAATAAAATCAGATTGGA
TAGTCTGATCAATGGGCCCATCATATGTTGGAGTAAGAATTGAGCGCTCGTTATCACCGA
CCGAATTTAACAGCTGCTAGCTAGTGTGCCATGTGTACTTAACTTCTGAAATCATCCAAC
AATTAATGCCATCTCATCTACAAAAGGAGGGGTATGTCCTCCCAATCTGAGTTATCTCAC
AGCATAATCGAACTCTCTGTCTCTCGCCTACAACTTCGGTATCGGGTCGGCGATGGCGAA
CCCTAATCTGATAGCCGGCTGCGTGTTCCAACCCACCGGCCGTGAGCTCGTCAACCACTA
CCTCGTCCCCAGGGCGGGGCTCGGCGGCGACATCGTCCCCGGCTTCATCGAGGAGGGCGT
GGACGTCTTGTCCTTGCCCCCGCGCAAGCTCCCCTTCCGGGAGAACCACAAGAGGGAGTA
TGGCGAGGTGTGGGGCTTCTTCTTCGCGGCGCAGCCCGCCAGGCAGACGTGCCCGCCGCC
AGGCGCGGGCGGGTACTGGGTCCAGTACGGCCCCGAGAAGGCGTACTACGGCCAGACCGG
CGGGGAGGCGGTGGCGTTCCGGCGCAGGTTCGCGTACCGCTTCACGTGGAAGGGCGGGGA
GGTAAGGTCGCCGACGCGCTGGCTGATGAAGGAATACCGGATCAACAGGGGCTCGGCCGC
CTTCCGCCACGCGCACCCAGACCCCGTGGCGCCGGACGTCGTCTTCGTGGTCAGCAAGGT
CTACCGGAAGCCGGTGCTCCCCCCGCCTGTCGACAGCAGCTCCAGCGAGGAGGAGGGCTC
CGAGCGCTCCATCGTGCTGAAGAAGAGGCGCTAGCATTATGCAACTGCATGTTGATTTCT
TCAGAGATGTTGTGTCTGTTTCTTGTTTCATTTCAGTTCTGGATTGTGCGCTCCATCTAG
TTGATTCCTCCGTTTCGTTCAAAGTACAGCTGTAATCTGCCTCCCTTGCAGCATCTGTAG
AACAGTTCGGACGTATTATCACCGTTTCATTTTATGATTTAGGTTTTATGTATTGGTCTA
ATGTCTTCGCATCTGAATGATTTTAGACTTTATGACTGGTATTTAGGAGTAATGGTTTCC
AGTTCCAGTGACTGCAAACAAGCTAAGGAGATGTCTTCACATCTGAATAATTGGAAGATA
CAGGTCTAGAAAACTTTCCTGCAGAGAATCACATATCTTCTATATCTAAGTAGTTAGAGC
ATCTCCAACCGTGCCACCAACAGGCCCCCAAGGCCTTCTTTTTATCACCGACGCTAAAAA
AACGGCCCAATCGCGTCGGAACCCTTTTTCGCTGGTGAGGACTGGAAGTGGCCCCAGCGG
TCCGCCGAACCTAGCGCCTTGAGGGGGGGGGGACACTTTTGGCGCGACACGGGGGGGGGC
GGCGCGGGGCGGGCG