Map Locations of contig_1560160 (8623 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1560160

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10989 7 3476 bp AK248677.1 Available Available None





CDS Structure of MLOC_10989






Contig Sequence (8623 bp)

>contig_1560160 8623 assembly3_WGSMorex_rbca.fasta
TATGTATTTTTTTTCAGAATTTTTTGAAACATTAAAATACAAATTTTCACTGAATTTGAA
GTTTGAATTTAAAGGCCTCCAGTGAGCTCGGGAGCCAAAAGCAACATAGTCAACCTCTAA
AGAAACATAGTCAACCTCTACAGAAGCAACATAGGTATGTAGCTACATTTCTTTGTACAG
AGGCAACACACAAGTCAACCTCTACATCCGAATAAATACCAGCTACTTACTACGTCAAGC
AAGCTATGAAATCAGGCAGCACGACAATCCAAGTTAGTTTAGCCCTTTTACTGTGAGTAA
TTGAGTCATGCAATGATTTCGGCTAGACTTCAACTTGTACGTCATATTCGACTGTGTCAC
AGTGAAGGTAAACTTCCTCAATACAGATGCACATTGATCCGAAGGGGATATTCAAAGACA
GACAATTTCGATTCACTTGCACATTGATCCAAACAGGACATTCAATGCCAGACATTCTGA
TTGTCCAAGTGATTTACTGCCTCCTACCCTAAATATGTGTCTTACAAAGCATGCTGTCAA
ACTTGTATAGCTTGGTCTGTTAAAATAATAAAAAATATTCACATTGGTAGGGAAAATAAT
ACTTCTAGATTTTCATGAAAAATACCTTCACAAAATAAAAAAAATGTTTTTTACAAGCAT
ATACATGTATAAAGTAACAGTAGATGTATGTTGGAGACCATGTCAATGTCTCAAACAACA
CGTATCTGTGAATGGAGAGAGCAGGTACTGGTAGGGCATAGCATACGCAACACGTACCTG
ATTTAGAAATTCATCCAGCCTCCTAACTAGCCGTATGATGCTTCCTTCAAAAATGTCAGT
CATTTCTATCACCTCTCCGAAGGTCGCGCCCTGTGCGAACATGATAATCAGGAATCGATA
TAGAGCTAAAGAAATTGCAACATAACTAACCATGTAGAGTAACATTGCATCTGATGGGGT
GAGGCATGATAAGGATCAAATGTCACAATTGGAAATAAGATTTTATCAATGGCTCGAAAT
TTCCCGAAAAGAATAAAAATCTATGGCATCACAAACTGCGCATGCATAGTCTGACCAACC
TTTGACCAGCAGTATATGACATCCATCAGATAGGGTTTACAAGTTGATTCAACATATTCT
TCCACATTTACGTCCAATTTGCATTCTCGTTGTACCTAAAACAAGAATGAGAAATAAGAG
ATCCCACTACAAGTATAAGGACTAGTAAGATACTCCCTCCGTCCCGAATTACTTGCCGTA
GAAATGGATAACTAATTCCGGACAGAGGGAGTAGTAAATAGTGGTGATACAACAAGTATG
CACCTCAGCAATTTTTCTTGCAGCCTCCGAGAGTTGCAACATTGGCTTAGAAAGCTCATT
TCTCAGGCGTATTTGCTCACTTGACTTCTCACACGGTACAAAGCAGCTAACAACAGAAGC
AACTTGATGGTGATCAAGATCATTAAATGTACCTAGTCATGTAAAACATATTAATGCAAT
CCTGAATATAAGGTACAAAAAGAAACTGAACATGGTATCGTATTAAGCATGTACCATTGA
ACATAAGTTCAGTGATAAGCAGCTCATCCCCAGTGTCTATTAAACAGGCAGCACGTCCCT
TTAGCTGGAGAACACCATCCGTGTCAATGTGACCAAGCATCTTCAGGACGCGAGACCGGT
TCTTTAGTTCATCCCTAAATTTTTGCAGCTGAATGGAGGAGAAAAACGTAAGAACACATT
TAGCTCTTTTAGAACGATCAAGTATACAAAGAATTAGCCAACCTGTGAATCCCGCATCTT
TGACTTTAGTTGTTGAATTTCATGATTCAGTTCAGCCTTTCTTTGGTACCATGACAGTTG
CTGCTCACTTTGATCAGACTAGGACACAAAATAGCGAAAAATAAGCGGGTCACAGTAAAA
AAAGGGCTGGACATTTCTTAATTGAATTGTGATGACAAGGCATACCTTATTAAGTGGATG
AGAACATAATTTCTGCTCGAGACCATCAAGTTTATGAACCAAGTCAACTAATTCAGGTTC
TTCAATACCCATGTCCTATTAATTGTATCAGATTATCAAAGAGATCACTTTACGATGCCA
GATGATAAGAAAACATGTTCACAGGAACTGGACCAGAAGGTAGAGCACAAGAGGACATCA
AAGGGTTTGCGAACATGTATATATCAGAGTAGGAATAAGCAGGCAAATACATTGTTATTT
GAGCTATTGCATCTGTGTTCTCTGCCTGTGTATCATGCATGAGCAACTGGCATGCTAAGT
GCCAAAAAAATGTCCATCTAAATCCTGATGAGACATTTTTTTTTGGAATTTTCGCTCTCT
CTAGGCAGAAATGGTACTTGCAATGCAACATTAATAATATTATAAGTGACATCATGTAAG
AAGAATTTTCACCGTAATTGGATGTAGCTTTGGAAGCCCTTGGGGGTAACGTTTTCCTAG
TTCTTGAACTGCAAAGAGTATGTTTTGTCTCGCTTCAGGTGGTCGTAGATCAGTTGGAAT
GCTGATTCTAACACTGCTTAGACCAGATAATAAAGGTAATGGTACAGGCACCTGCATAAA
CCTCAGCATTAGTCAAAAATAGTTTTGGGACATACTTAAATGACCATCATAACGTGGTAG
TCTAGTGAACTGAAGATATGCCACCAATTAAAAGTTTAAAACCCTTCATCATGAGCTTCA
ACTCACCACATGCATTTCTCCCTTCTCCCCTTGGCGAGGTGGGCGTGGCTTTGAACGTGG
TCCATTGACTCCGTTCTCGCTTGAACTTGAAGAACAATGAAGCAAGGTATCCACTATATA
GTTATTGCGAGATGCACTTAATGCAGGGGGGAGAGCACTAGATGCTGGAGGTTTCTTCAC
AACATTTACGACCACACCCCACCCCCAGTCTGTTGAGCCATCTCTGACTTTAACCTGCCA
TGAAGCAAATTGCTGAGTGCAAGGGAATTTGTGCAGATTTTATATAACCAACATCATAAG
TTAAAACAAAGAGCAGTTCAACAAATAAAATAAAATGGTGAACACAACTAGATACTGTAT
TCCTGCTGTAGTGCTGTAAGGTTCAGATATATCAAGTATTAATGAACATGTATATCTCAT
CCTCAAGAAAGAACATAACCTATGGGAAATGTTACGTACCAGCCTTCCAGGGACCAAATA
TAACAAAGCTCTCTCTGGTCTAATAATCTCAGACATGATTTTCTTTTCAAGTTCAGATAT
ATCAAGCCCTAACTTGTGATACTCGGCAAGATCATTCTGTACAGAGAAGTGTTAAGCCGT
TAGTCAAGCAGAAGAACAGTTATGTACTCCCTCTGCTCCTAAATATATGACGATTTGGCA
GTTCAATTACTACAATTAAAAAATAGCATACCTCTCCAGAAGAATCCAGCAATGTAGCTT
CATTTTCCAACTTTGTAATCTTCTGAACGACTTCAGGTAATGCCTGAAGAGCAAGGGAAG
CTAATAATTGACATTGCCAAGGAAATGTCAGGAGAGGCATCTATAAGAGGTCCTGAAACA
AACCTTTTCATATTGAAACTGGTGGAATGAATTCCGGATCACATGTTCAGCAGTAAATTG
GCCCTCCGCACGACTCAGTAAATTCAGAATAGTATAGTAGCTCAGTCGGAAAGTGCTGAT
GAGAGGCGCTGGTTTACCTAACACCATGTCCTTGATAACACTCATTTCCATCTGTAAATT
TAACTCATACTATGACCAAGAGACAAAAGCAGACTGAAGGAAGTACATGAGCACGCCACA
AAAGCAGAGTGTATTTATGTTGCATAAGAACCACGTCTTACAAAATAAATCTTGATATAG
TGTCTTGATATGGAAGGCAATTCAAGCATGGATATGGAATGAAGTGTCTTGAAGGACCGC
TCCAATAGCGCAAAGTGAATGTTAACACAACTACTAAGAAGTCAGAACAAATTAAATTTG
CATATGAATTACTGCAACTGCAAGCTAAGTGAATATTGATATGAGAATTAAATTCAAATA
TGAACATGGAACGGCATCTCTTGGGTGGACAACTTCAATAGCACAAAACGACACTCAACA
CAACTACTCAGAGGTAAACAGGTCATATATCTTTCAAATGTAAAGTCTTAAAACATATCC
TAACTCATAATGACATCAGGTAGTCCTACATGTCACTGCATACGAATAACGATGAAACTG
TTATAGTTTAAAACTTTAAATATCAAAACTGACAAGCAATTGCAATCAGTGAAATCATTT
GCATCAGACAAAAATGAAGCAGTTATCAGTTGTCACATTTTATTATGCTTAATCAACCCA
AAAATGACAACTGCAGAATCTGGATAGGGATGCATTTTGATCAAATCATTCTATTAAATG
AAGAGTCCATTAAGCTTGTTGAGTCAACAAAGAGAAAACAAAGCTTCTTGCATGATCATA
GTGCTTTATAAAATTTATTAAGAAAAACAAAGATAGTTGCAACAGAAGACTGCACAGCCT
TACCTTCTCATCAATCATTATAACACAAATGCCACGTGCATCCATGCCACGTCGACCAGC
TCTTCCACTCATCTACAAATGAATATGAAATTACAGTAAGAAGGGCTTGTACAAAATTCA
ACCGACCTAGTAAACTTATCCATATGCCCGACTTCTCTTCATATATAAAATATCTACCTG
TATATATTCTCCAGAAGCAATATAGCGGTTACTATCACCGTCCCATTTCTTGACAGATGT
GAATACAACTGTTTTTGCAGGCATGTTCAGCCCCATGGCAAACTGCGGAAATAACAATCA
TTATCAATCAAATGGTGAAAGAGTGTAAGATGCATTCCAGAAAGTATACGACAATAGTTC
TCTGACTTCCCGTAGTTCAAAAACAAAAAATAGAAGTCCCTTTGAGGAATGTGATTCGAA
ATTATACTACATGTAAAGGGACGAAATAAGTATAAAGCCAAGCAGGTAATCAGGGTTAAA
GGGCACACCGTCTCAGTAGCAAAAAGAGCTTTCACAAGACCTTCTTGGAAGAGCAATTCC
ACCAGCTCTTTAATTAATGGAAGCAGTCCAGAATGGTGTACTGCAATACCTCGTTTAAGA
AGAGGCAACATCAACTCTATAGCAGGTAACCCTCTATCTTCCTCACTTAAACAGAAAATA
GCACTACGGAAAACCTGCTCGATGTTATCCTTTTCTTCCTGAGTGTTGAAATCAAGTTTT
GACATCGACATGGCATGATGCTCACATTCTCTTCTACTAAAGCTGAAAATTATGACTGGT
TGAAACTTGCGGTCCATAATCATCTGCAGAATTATAATTCATCAAAATTAAGCAAGGATA
TGAGTATAAAACATCTACAAATAAACAATGAATACTGAAAAGTGAGACTTGAACTGCGGC
CTAATTTCCTAACCCAGTGAGTGGTGAATTAAAAAATATACATGCAAGCTGAAGAAAGCG
TACCCATCTATTGTTGAAAAATTTAGAAAGCACAATAAGTCCAGAAATTATCTTGCATAC
AGTAGGTCAGTGGCTGCCTACCTTGACAATTCTGTATATGTCAGATGTTCCAGAAGCATT
TCCACCTTTTGCGATTCGGCCACTGGCTTTAGGCCCACCACCCTTCCTCCCATCTGGTTG
ACTAGGTTGCTTTGCAAATGTGTCTTGCAGCTTTAGAAAGTTATCCTCCCTGAACTGACC
ATTTTCATCCACTACAAGGTAGAGACCAGACCCACCTATTGGGAACACATAGTGCTGTAG
TGGTGTTGGCCTGAAGTCTGTATACACCACGTGACAAGGCTGCTTGTGCAGATTGCATAT
CCACTCAGCGAACTCGGTTGCATTTGACATGGTAGCAGAAAGAAAGACCATCTTGATGGC
AGGGGGCAGGAAAACTATACTCTCTTCCCACACAACGCCTCTCTCACGATCCTTCATGTA
GTGGATCTCATCAAATATAACCCAACCAACTTCCTTGATCACCTCGGAGCCCCTATAAAG
CATCGCCCTCAGGATTTCTGTTGTCATGACCAGGCAAGTAGCATTTGGCTGAAGCGTGAC
ATCACCAGTCATCAATCCAACATCAGAGAACTCCTGACTAAGCTCCCTGTACTTCTGATT
ACTAAGAGCCTTCAACGGAGAGGTGTATATCACCCTCTGCTTGTCTCTGAACGACATTGC
AATGGCGTACTCAGCGATGGCCGTCTTCCCTGCAGAGGTGTGAGCCGAGACCAGGACAGA
TTCATTCCGCTCCAGGCACGCGATCGAGATGCTCTGGAAGGGGTCAAGCTGAAACGGGTA
TGTCTTGGCCATCTCCCCATTAAACGCAGGGTTTGAAAGGGTCCCATGTACGGCCTCATC
CTTGGACAAATCGTAGCCGTTGGGGACAGCGACCTCATGGATGCACGACCGGGCGAGATT
CTGACGCTTGGCAGTCGAGCCAGGCAGCGGCTCCTGCTCGTGCAGAACAACAGCAGAGGA
ATTGTCCTCCGAGCTCAGCTCAGGTGCTTTACGCTTGCTGGAATTCTCCACCTCTTCCAT
TTCTTTGATACAACCTACCTTATCAGATCAGGAACATGAGTTAATTGCAGCAGGATAACA
TGAGAAACATTTAATTGCACCCCTTAAGAGGAAAGAAAACATTACGAGTAGCAGCGCCAG
ACTAGAATTACCGCTTGCTTAACATGTCAAGAATGCTGTGGATTTCGCAAACGGTAGCCA
ACTTGCAAGATTCCAATACAACGGTACCAGTAAGAAACTAAGAACAATACTAAAACTCTA
AACCATCACAGTACCAAAAACAGATTATCTCCAACAGTGAACGGTGGGCGCTTTCCTATC
CTATGCTAGCTGCGTGGAGTGTCTCAGATGGCTCTCAATTTAATTCCCCAGGCACACACA
GAAATCACCAATTCATCACATCAAATATTCATAAAAAGGAACAAACAGAAATTGCCAGAA
CAAACGGACCGGGAAAATAAAAGCGAAATGAATCAATTCCAGCAAGATACCCTAAGCAGG
GGCAGAGGCGGATCTAGATGGTGCGCCCGCACACCAAACATTTCGCGAGGTCAGTGGCGT
TTAACTAATTAACCATGGATGACACAAACTCGTACCTCAGAGACCAACGGCCAAGGTTGG
GGAAGGGGTTCGGACAGCAGGGAGGCGACGAGCTTGGGAGGGAACGGCGATGGCGGCGGC
GCCCGCGAGCGAGAGACGGAGGGGTTGGCCGGTTGAGGGTTGGGGGTTGAGGCGTCGGCG
GTGACGCTAAGCTACGGCGAGGCGGCAGCTCTAGGGTACAGCGGAGGAGGAGGTTTTAGA
GCCGCATTGGGGCGGCTTGGAGCCTTTTTCCTTTCTCGGTGAAGAGACGTGGGCTTTGAT
GGGCCAAAACTAATGCGAAAAGAGTAAAATGCACAATTGGCCATTAAACTTATCGTGTAA
GTTCACTTTCATCACTGTATTTAAGAATACGGTTGATACAGTCACTATGTACGTGATGAG
ATGATTATACGGTCACCGCCAGATCGTATAGCTCGGCATCCATTCATTTTAACCGGTCAA
ACTATTTAGTTGGCACCTATCAATTTTCGCTCTTGTCATGCGGGTCCTACCTCTTATTGG
TGGAAGAAAGAGGTCGGGTCAATTTTCGCTTTGTGTCATGTGGGTCCTACGTGTCATTTG
TGGAAGAAAGAGACCGGGTTAGCTTTTGCTCTCTGTCATGCGGGTCCTACCTGTCATTGG
TGGAAGAAAGAGATCGGGTCAGTTTTTGCTCTCTCTCATGCACGTCCTATCTGTCATTGA
TGGAAGAAAGAGATCGGGTCAGTTTTCGTTCTCTCTCATGCGGGTCCTACCTGTCATTGG
TGGAAGAAAGAGATCGGGTCAATTTTCGCTCTCTGTCATGCGGGTCCTACCTTTCATTGG
TGGAAGAAAGAGACTGGGTCAGTTTTTGCTCTCTGTCATGCGGGTTCTACCTGTCATTGG
TGGAAGAAAGAGATTGGGTCAGTTTTCGCTCTCTGTCATGCGGGTCCTACCTATGATTGG
TGGAAGAAAGAGACCGGGTCAATTTTCGCTCTCTGACATGCGGGTCCTACCTGTAATTGG
TGGAAGAAAGAGATCGGGGCAGTTTTCGCTCTCTCTCGTGAGGGTCCTACCTGTCATTGG
TGGAAGAAAGAGATCGGGTTAGTTTTCGCTGTGTGTCATGCGGGTCCTACCTGTCATTCA
TGGAAGAAAGAGATCGGTCAGTTTTCGCTCTTTGTCATGCGAGTCCTACGTGTCATTGGT
GGAAGAAAGAGATCGGGTCAGTTTTGCTCTCTGTCATGCGGGTCCTAAATGTCATTGGAG
GAAGAAAGAGATCGAACGAAAATAATAATATGTACATGTTGCGGGATTTGAACCCTAAAC
CTACTGCTTTAGGGGCGAGCAGGCTAACCAGCTAGGCCACCTTCACGTTGCGATTAATAA
GAGGAAAAACACTTATACCTTTTATGCATTCTTGTGACAACCATTCATTGCTCATGTACA
TCGGTCGGTACCACGAACTGTAAGTGCATCTAGTGCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGGTTAAGTATCTAATGTGGTTATGAGTGTACACA