morexGenes - Barley RNA-seq Database

Contig contig_1560132
Source Contig contig_1560132
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1560132 (7832 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1560132

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10973	1	678 bp	MLOC_10973.1	Available	Available	LOC_Os03g12610.2, FRAME:+3, EVALUE:3e-61, 13103.m01445 protein DNA polymerase I, putative, expressed
CDS Structure of MLOC_10973

Contig Sequence (7832 bp)

>contig_1560132 7832 assembly3_WGSMorex_rbca.fasta
CCCACCAGCATCCTCCGGCGGCGGCGAGGGGAGGGAGGGGAAGGAGGGGGCTTGGGTGGC
GGCTAGGGTTTCGCCGCCCGAGTCGCCCCTGGGAGCGACGCGGGGCCGACTACCACTTTT
ACTTGGAAAGTGAAGCAACTAGGCAATGGCTGGAGTTAAGGGCTATCCCAGCATTTCTTG
TTTTCTACCAACAGTGCAAGAAGTGAAATTAGCTGATATAAATTTGATATTGCTAAAGTC
TGATGTATTTGATATTTTCTTGTGTACTCTGGTTGTTATGATGTTATCTATCGCTAACTT
CTTTCTTTTTCAATATGCCTGGCCTCTTTTGAAGGTGCGTGTTGTCTCTCCTGATAAAGA
TTTCTTCCAAATTTTATCACCTTCTCTACGTTTGCTGAGGATTTCTCCACGTGGTTCTGG
GTCAGTGTGATTGTTTTTTACCTTCTGAAAGTGTCGCTTGAAATGTCTAAACAGTTCATT
TTCATGATTTTGACATACTGGAGGTTTCATTTTTTCTGAACAAACAGGATGGTTTCATTT
GGAGTCGAAGATTTCGTGAAGAGATATGGAGCATTAAAGCCATCACAGTTTGTTGATGTT
GTTGCACTTTCAGGCGACAAAGCTGATAATATACCAGGTATTGTTTCTGTTGCTGTTGTA
TCTTATACCATTTTAGTTAGGGACCAACAAAGCTTGTTCCTGGTGGGTTGGCATGACAAG
CCGGCCCAACTGTATATGAAAGCATGATAGATCTCTTTCTACCTTAGAAATGCATCAAAA
ACTGGAGTACGGAGAGAAAAAACAGGCAGAAACTTCCTAATTTAGGCAGTTGGTTAAGTG
TGTTGCATGGGTTAGACGGTTTCTGGACTATTTGGCCTATGGGATGGGTGGCTGCTTTTG
GTAGCCAAGTTAGCCTGAGACATGTCGTTATGATGTTGTCACCCTTCTCCTTGCAAGAAA
GCAAGAAGCACCCCCTACATTGGAGTCCATGGCTGCGACGATGCTCCACAAGTCGCCTGA
GCAAACTGCCTCCAGTCCGCTCTGCCTCTACCTTGCAGCTGCACCATTTGTCTCCAAATC
CTGTCCGCTTCTCATGGTCCCCAAACTGCCCCACCGCTTCGTGCCCCCAAGTCTACAACA
AGTGCAGTGGGCTCTCTGCTCTTCTTTTCTATCTAGGGCTTTCAAGCTTTGCAACACAAT
GCCATACATCTCAATATCAACTCTACACTGATAAGATGTACTGCAATTTGATTGCACTTC
TACAGCACAACACATCTATGAACCCACTGTATGTGTAATGAACCCTAGTAAGTCTAATTA
CCTTTACTCCCCCCCCTCACGCACACACAAGACCATGAATGACCTATCTTTCATTACGGG
GACCTGCTGACTGTGACATTGTATGACTGATCATTTTGATTTTCAGGAGTTGAAGGAATT
GGAGATGTTAATGCAGCAAAACTGATAACTAAGTTTGGTATGTTCATTTTTTATCAAACC
TTTTTTTGTTCCTGAGTGCTTATTAGATATGTACTCACTATTGATCACTTGAGGACGGTG
GCCTAGAGGATGTTGCTTTATTTATTTTTTAGTTTATTGACTAATCGAGCTAGGTACACA
ATCTGAAACGAGGTTTTGTATACACAGAGTTAAAGATGACTAATGTTCCATCACTAATTC
ACCAGTGTTGTTGTTACAATATATTTGATGTTTTGAGTCTTTGAAAGTATGGAACAGCAT
TATCAGAAACCTTGATTGAAATTGTCCTTCCGTTGGAATTTGAATAGGTTCGTTGGAGAA
CTTATTGAGATCAGTGGATGAAGTCGAGGACCAGCGAATCAAACAGGTAAGAGCAGACCA
TTCTAAATCTTGCAGACTGCAACAATGCAAAAATGACATCTGAAATTTTAAACATGTTAT
CATCTTCTTGATTATCGATTGCATTTTCTCCGGAAAGTATGTCAAGTTGTCAACTTATGG
TGTCCCAGATGCCTGAGTAATTTATTTCAGTAGAGTTCTTCCCTAATGTTCTCGTAAGGA
AAATGTTGAGAAGCTGTGCTGACTGTGGTCCTTTACAGGCTTTGATCTCTCAATCGGAAC
AGGCATTACTCTGCAAAAGCCTGGTATTTTTTTTCTTTCTAACCGTCTTCTTTCATGAGT
ACTGAATTCCACCATCTTTTGTATATTAGCCTGCTAATAGATGAGACCATCCCTCGACTG
AACTCTTTTGATCGAGGTTATTCTTGCTGTAGGCCATACTACGTTGTGACCTTCCATCCT
ACATGGTTCCTTTTAAGACCCCCGACCTCGTCTTCCAGAAGCCAAAGGCAAGTCAAGCCG
TAGCATCGTATATCTTCAGTACCACTAGGTTCTGTTCATTTTGTGCTTCCTGCTTATGCT
GCTATCCTGCCTTTCAGGATGATGGCGCCAAATTCATAAATCTGCTGCGAGCTTTGGAAG
CGTATGCAGAAGGATCGTCGGCAGACCAAATCATCAGAAGAGCTTTGTATCTTTGGAACA
AACTTGAATCATGACGATGCCAGAGTTTTTCAGTAGTGACCCTCAAGAATGTTCGGATAA
TTAGGCGAGAAGATAGGAGACCAGTACAATGCGATCGGCTAGCTTCTGCCTATGGAGCAC
TCACCATACCCGAAGAGAGAATTCATCTCGTTGCTGGTTGTGCTGAAGCGCGCAAGAAAG
ATTCGACGTTGCCTGCTTAGACAAACTGTGCATACCATGAAACTAATCATAGGTAGTTTG
AGCTTTGTAGATAAAACACATCGGTAACGTATTTTTTTGTACTTCTAACTAAGGCCCTGT
TTGGATTAGCGCTTCCATTTCAGATACCCCCATATAAGACTTACAGACCTCCCACGGTCA
TTTTTGTATCCAGTCGAAAACAGCTCTTGGCCGGTAAATTACACTTGTATTCAATTCCAT
CGATCCCAAGCGCGGCCTAAGGGTAGAGAGATGCAAGGCGGCTGATTGGTTCGTCGTTCG
ATCATGTGCTAAGTTTCGCCTCCTAAGATGAAAATTACACCTGATTAGTTCGTCGTTCGA
TCATGTGCCAAGTTTGACCATTTTTCTTTGTCCTCAGCCGGTGAATTCTTATGCACACAA
AGAGTAATGTCTGCGTTCCAAAAGTCATAGGAGTTTTCATTCAGAAAATGACTATCTATA
CAGTCATCTACCTACTTGGGGCCACCATTGCCAGGCCCAGCAAAACACCAAACAAGACAA
GCAGCAGCACGCCGGCGTCAGCTCTTGGCGATGCTGCTGTTCCCGGTACGTAGCACGAGC
TGCTCTGCTGCTGCGGCTGCGTGTTCCCCGGCACGCTGCCCGTCGTCACACAGAACCCCG
CCGGCGTTATCCCCCTCCCGCCCTGCGGCGCACCCTGCAAAACAATCGAAGAGCGTCAGC
GCCGTCCATTCCATCGAACGCACAAAGGCAGTACTAGGTTCGGCGAGCACCTGCGCCGGA
GCCGCGGTGACGCCGATCTGGCCTGACGTGCTGGGAGCGGCGCTGCCTTTGGCCAGCCCG
ATGTCGTAGTTGGCGGTGAGGTCGGCCTGGTACAGCCCGAACGACCGCTCCGACACGGGC
CCGGGCTTGAGGTCCTCGTCGTAGAGCGCGAAGATGTAGGTGTCCACCGACTTGCCGGGC
GTCCTCGGCGTGCCCACCTGCGACCTGAGGTGCGCCACGAGGTTGCCGTTGTACGCCCTG
GCGCCGGCCTCGCCGGCGTCCCCCTTGTACGGCCACCCGGTCTCGGCGACCACGATGTCC
ACGCCGGCGCACCCCTTGCCGTCCAGCGCCGCCCGGACGGCGTCGAGCTGCGCGTCGAAC
ATGTTCATGTAGGTGAGCCCCGACGCGGCGTCCACGCGGCCCGGGTTGGGCTGGAACAGG
CAGAAGGCCAGCGTCTCGTCCCGCGTGTCCGACGCGTACGCGAAGTACGGGTACGGGTTG
ACCATGAACGGCCCGCCGTTCTGCCGCAGGAAGTCCAGCACCGGGTCCAGGCCGCCGGCG
AGGTCCGGGTGGAACGCCCCCGAGGACGGCGGGTCCGACGACGCCAGCACCGCCATCGAG
TGCACCGTCGACACCTTGGTGGTCGAGCCGGCGGGGAGCGCGGCGAGGAGGTTCTGCATG
GCGGGGAGGAGCTGCGGGCCCAGCGTCGGGTCCCCGGAGTTGAGCAGCTCGTTGCCGACG
GAGATGGCCGAGACGGACACCGTGGTGGGGATGTTCGCGGCGGCCCACGACGCCGCGGCT
GCCGGGGAGGCGGCGAGGCTCGGGACGTCGGAGTTGGGCACGCCCAGGAGGATGGAGATG
TTGGACCCAGCGAGCGCCGCGACGAGGTCCGGCTGCGGCTCGTAGAGCCGGAGCTTGCCG
ATGGACGTCGACGTGAGCAGGCTCGCCGTCGACGCCGCTGGCGGGAGGTTGTCGGCGATC
GTCCCGTAGTTTACCCCGATGAACGACTGCGACGCTGCAAACGTTGAACACGTACGTCCA
CGCGGCGAGTTAGAACGCATAACGAAGTTACTTCCGTGGATGTTTTCATAACAAGCGCAT
GTTTGATGTCAAGCAGATACTACAAAAATGGTGTCGCAACTAGTTTTTTTGTACGTGTAT
GCAGTGGTGATAAGCATCAAATTCTTGGGACGCGAACGAGCCAGGGCATGTCTGTAATTC
TATATGTATCGGACTTTTGTATTGTTGGGCAACATGCAAATATACGTACGTACGCAGCTA
CTGACTGTACAGTCTTGGCCTCTTCGAAACTGCACATGCACATGCACAGTTGTTAGGTGC
TGGACCTTCCTCTGTAGAAGCATTGCCTTTTTTTCTTTTTCGCATTGATAGTTTGGTTGA
TACTCGTACCACTAGCTAGATTCCATGACCAGCCGGTTGGGCGCGGAGACTCCTCAAGCG
TGAGGACAGCGGTCAAAGTCACCTCGTGCCAACCTTGCCAACATAACGTGCATGTGAGGT
TGCTTAGGAGCTACTTCCACTCATGTTCTACTTACTTTGAGCACATCAGCTTCCGCTAAT
ACAGTGTTTAGTACGGTTAACGTCTCGACGGTCGGTCAGACTCGACAGCAAATCCGAAAA
TGATTCCTTTCTCTATCTGGGCGTTGGGAAATACAGTAGTATGATCAGGACGGCACAATC
CCATCTTATTTCCGCTTTTTTGTCATCACAATCAGAAGAGCAAGCATACGCTCAATATAT
CCGCGTACAACTGAAGTCAGAAGTATATATATTTTTTTCCGAATGGAACAGGTTAAGTCA
GAAGTAACAAAACTCATAAGAGAAGCAGGGAAACTATATATGGAATCTGCGACCTACCAC
ATGGCATATGTGGTAAGCTATATATTAAAAAAAAAACATATCAGAACGGTACTGGGAGCT
TACTTGCCAATTGGAAGAGGAAGGCGCCGTGCAGGAGCCCCAAGATCATAGCAGCATCCA
GCCGCCACCTTCTGCCCGCCATGCTGTGCTGCGACCGCCTGATGAACGCCCCCGATTCGG
TGGCTGGCCGCTTGGACGACTATGGAAATGCGAGGCAGACGAGGAAGAGGAAGGATGGAT
GGAGGAGGCGAGGCGAGGCGTTACTTGGGCTGTCGTCGTTTCCGGAAAGAAGGCGGGAAG
AAGGATGGAATGGACGACACACAGCAGAAGCCGGTCGCCGTCGCCTCGCTCGTTTCTGCT
GCCTTTGTGTTGTGCGTAGCGGCGGGCGCACCTGCTGTACCAGGACAGATATATAGGCAG
CGGTGACGATCAGGGAGGGGGCGCGGCTTCGCTCGCAATGCTCTCTCTCTGGTGGGTGGT
GGGTGGTGGCTCGGGCCAGCACGGTGAGAGCAAAACGGAGGCGATGGGCATGGTGGCGCC
GCGAGGCGCTTTCGTCTCGCGGAATTTAGGGGCGCATCCCGGCTGGAACCGTCTGATTTG
CCGCGTTTGTCATGTGGTAGGCTGACTCTGGCCACGGGATTTTGCGCAGGAATTGTTAAC
CTTGGTTCCTAGCAATTGTGTGTGTCTCCGGATTTGCGCAACGGCGCTGTGGCGCGCGAC
CGGCCACACGGGTGGTTATCGGGATAATTAATTGTGAGACGATTGTTATCTCAATCATCC
TCCCGTTCGACAAGGTCAAGATGAAATGAAAGGAAGCGATTTTTTCCATACGCATGATGG
CAATTGAAAAGCGCCCGCCACCTATATGTTCCTTGGGAGAGGGTTGGTCGATTGGATTGC
ATGGCGTGTGTGTAGGTATTATATTATGAACATCCTAGTAATATTTGGCCGTCCCAAATC
TTGGTCGATGAGCGTCTCAGCACTGATGTTAAATTCCTCGTGATGCGTGTTGTGCGTGAT
AACATTGTCTTCATCTAGGGGATGGATTACGGTTTGTCAACGAGTGGTTGTGGTCAGGAA
TGATGCGAGGCGGCCAGCCACTGAGGCAAGAGGGAATAGAGGCATGAGCGATGAGGTGTT
TGGTTTAATGAAGATGTCTTGAGGAAAACTAAACTTTTTGCAATATAATGGTATGCTAGG
CCCATACAATACAGTATGGTGAGGTTATCATCAAGGTTGTGCCTTCAATATTACGGATTC
AAAAGCTATGTGAGAGCTCACTTAGATCATCTACATCCGCAACTTGCAAATCCGGCCCCT
CAAACGCTTGCGAATGCGCCTCCGGGCGCGTTGGCGGACATTGACCGGCCACGCCTTAAA
TAATATATTCTATAACCGGATGCCTCAAATCTAATATCTTAAATCCATACAAACCATGCA
ACTACTACGTCGATGCATTATACACATCGTTCGATTAATCCATCACTACTAACATGCCAT
CGTACTATCAAAATTTGGCATGTTTGGCTACGGTGGACATTAGCCACGACTGTCCTTGCC
TTTCCCGGAGCCCTTGCTGTCCTTCTCGCCGAAGTACCGGTCGAAGATGCAATACAGATT
GAGCCGGATCTGCTCGTCACCGAAGCTGTCCTCACCGTCGCTCACCTCCTCCACCTCCTC
CGATGGCAGTCCGGCCATTTCACGGACCGCTCGATTCTGCTCGTGGGCGAGGACGTGTGT
GCTTCTCCGTTGCCCTTTACTCAAAATGTGCGCGCGGATGGCTTCCTCCTCTAGAGCCGC
CTGCACCTCGCATCAGCCACCTTCGCTTCTGCCATTTCCTCCGTGAGATATGCCTCAGCG
ACCCTTATCCTCTCCTTTCCACAGCGAACAACCCGTTTCCGGTGGGACTCGAAGTTCGCC
AGACTGGTGATGGGGAAGGAGAGATTTTCTGCCCGCCGGGACCTCGATGATCCTGCTCAC
AGGAACTGAGCACCCGTTGACCGTACGCTATGGAGTCGCGGTAGGCAGATCATGTCACCG
CGGGAGCGGGCGAAGTGCAATGCGAACCACCATTGCCTCCTCCAATCGGTAGGTGACGAC
CCCCAGTCGATGATCCAGACTGGTCGGAGTCAGATCCGCTTCCCTCCATGTCGGAGAAGG
CCGGAGATTGCCGGAGGTGAGCTAGGATGGCATATGGGAGTGCAGTGAAGTGGCTAGGGT
TTGCTTCGGTGAACGGATGAGGATGAATATATGTGGGGTCAATGCGGGCAGTGCGGGCTA
GGCGGGCGTGCTCGGGCTCCCCTATATCCGCCCCATATTTGAGTTGTATATGAGGGGTGC
CAGTTGATAACCCACAAGTATAGGGGNNNNNNNNNNNNNNNNNNNNNNGAGTATTCAACT
CAAATTTGTTGATTGGACACAAGGGAAGCCAAAGAATATTCNNNNNNNNNNNNNNNTGAG
TTGTCAATTCAACCACACGTAATAACTTCGTA