morexGenes - Barley RNA-seq Database

Contig contig_1560099
Source Contig contig_1560099
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1560099 (7040 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_1560099

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10964	2	1483 bp	AK372875	Not available	Available	None
MLOC_10963	4	1417 bp	MLOC_10963.3	Available	Available	LOC_Os03g17550.1, FRAME:+3, EVALUE:7e-147, 13103.m02095 protein serine/threonine-protein kinase, putative, expressed
CDS Structure of MLOC_10964

CDS Structure of MLOC_10963

Contig Sequence (7040 bp)

>contig_1560099 7040 assembly3_WGSMorex_rbca.fasta
GCCCACGCCCACGCCCACGCCCACACCCACGCCGTCGCCCTCAGCTGGTACGTGCGCGCA
GCCTCCCCTCCTCCTCCTCCTCCTTCTTCCTCTTCTTTTGCGGTGCCGGAATTCTTCTCC
TTCTTCTTCTCCCCTGGCGCCGGTGCGGCGCCGGTTCTTGGCCGCCGCGGTGGCGTGCTA
GTTTGGCCCCGCCGCTCGAGGCGGTCTCTTTGGTATCGTGCGGTTGATCGGATTCTCGGT
TCGTTTCTGACGTCGGTGGTCTATGAGCGAGGGTTCTTGCGCGGCTGATCCCGTGGTTTC
TTGGCGCTTCTTCGCTTGATGTTTCATGCATGGCTCGTGAAATGCGCTTCTTCGTTCCCA
GAATTTGGGATGCCGCAGCGCTTTCTCGTGATTTCGGATACTCTGCGTGAAATCGTTTGA
GCAGTTGCAACATCGGGAACTAGGACCGCGCGTAGGTTCATTTCTTCACGATTAAGTAAT
TGATTTTGCCAACAAAGTGTGGTTCTCTTCTCGGCCCTGAAACCGCACAAGATCCATGCG
TTCCTCTCATTGTGATTTGCCTGTGCTCTTCTTTGGATGCGTGCAGATATGCTATGAATA
AATCGTTGCATATCTGGATAGTACTTCAATTCACTTTTTCTTTACCAATTCGCTAATGTA
CCATGACGTTTCTCTTATTCCGGTAGAAAAAATATGCAGGACATCGAATATTGTTAATTT
TAATAAATCAAGCTAATAATTAGGGGCATTCTACCTAGTCATTTAGTATCTCATTTATCT
GTGTACAGCGCAAGATATACTGGCGATATACATGAGTAGTATATTTTCAACCGATTGAGT
AATTAATTTCGCCATGAACTTGTGGTCCTAGGGCTTCTTCTATTTTTCTTTCTATAAAAC
AAATGTCAGAGCACAGTCTTGAGGTCTTCTTCTATATTTAGAAGAAGATTACCGAAGTGG
CCCAAAATCTACACAACCACCGTGGCAGTGGCGCCGACCAAAACAGAGCAAACGTCCAAC
TAACCTCCTAGAACAGAAAGTGTTGTTCTGGGTCTTGAAACTGCACACAATTTTACTGGC
TACTGAGTAAATGTTATTTGATTGTGGCAATTTTTCTTTTAGGAAGTAAATTAATGTTAT
TATTATGAGGAGGACCGCAAATCCCACTGTGTCGCGATGATATGTGTGACGTATGCATGT
CCTTTGATTGTGGCAATTTTTCTTTTAGGAAGTAATTTAATGTTATTATTATGAGGAGGA
CCACAAATCCCACCGTGTCATCTATGATATGTGTGACGTATGCATGTCCCCACACAAATT
TCTGTCCCTTGTTCTTGCTATGGTTGGATTAGTGCGATGGCAAAGCCTGGATTTGATATA
GATGAGATCTTAAGCGAGACACCCAAAAAATACTTTGAATATGTGTATATAGCATGATAT
ACCAAATGAAACAGGTTACTGCAAGTTGTTTATATATATGTGTGTTTATTGTGGTTATTA
ATGAGGTACAGCTGTATAAATCTATGTACTCCTCGTGTATTACTAGGTTTGCATGTCTGT
AAATTCATTGATTTACTATGTCCAATTACTAGGTTTAGAATTTTTTGGGAGTTTACTCTG
TAACCCCATGCATCTATACTTAGAAACAAGTAGAAATTAGATTACATGATTGTTTCAACA
TGGATAGTGTTAAGTAAAAAAGAAAAGGGTTATTTCTGTAATTTTGACTTTTCTGTTTAC
AATAAGCTTTTTTGTTGTTGCATACTTGGAATTGGCCAGTTCCTTTTTGCCGATTCATAA
TTTCCCACAAAAACAGTTTCCTTCTGGATAATGAAAGTGTTCAGCCTTTTTCATGTGATA
GCTGACAACTACACTGGTGATGCATCTATTTTGTTTCTGCAGAGATGTCAAGATTAGGGG
CCAGTCAGGGAGCCGTGCGCACTAAGTTCATCTCAAGCCCTGGTCATACCCATCGCCTAT
CATTCACCTACGAGGAGCTGAATGCGGCGACATTGGGCTTCCCGCAAAACCACTTCCTGG
GAGAGGGTGGGTTCGGAAAGGTTTATAAAGGTGTGCTGGACGGCAACGAGGTGAGTTCAT
GTGTTCTATGGGCAGTTAAATAATTGCAGTCATGTTTGATAATGTATTAAACTCGGAAGA
TATTTTTTCTTGCTAAAATGTTAGTCGCGTGAACGACAGTGTGATGAGAAGTTAAACTGA
TGTGGTGAGCTCAAGAATGGATCTCGGTAGCATTTTGTTTCGTATTTTAATATTTTTAAT
GTGGTCGACGATCTATGCTATGGCCTATATGGTTTGCTGAGGTTATTTTGTTATGACAAG
TGAGGCTTGTGAGGATATGGTGTAGTATATGATTCACTTGTATGTTGCTGCAACAGGTTG
CTATAAAGATTCTCAACCCCAATGGATCTCAAGGGAACAGAGAGTTCTGCACAGAAGTTA
TGGTGTTGAGCAGGATGAATCACCCGAATCTTGTCAAGCTTGTTGGCTTCTGCGCTGATG
ATGATCAGAGGCTTTTAGTTTATGAATTCATGCCTCTGGGTTCACTGGAAACTCATATAT
TTGGTATGGTACTAAACTACCATGTGTATATAGTTCCCTACTTCATTACATTGTTGCTGA
ATAATCAGAAGCTTGTTTAACCAGAATTCGGTTTTGTTTTTTATCTTCCCAGATCTTCCC
CCTGATAAGAAGCCTCTTGACTGGAATACAAGGATGAAGATACTTGCTGGGGCAGCTCAA
GGCCTGAAGCATTTGCATGTTAACTGCAACCCTCCTGTCATAAACCGTGACGTGAAATGC
GCGAATATTTTGCTTGGCGAGGGATATCATCCAAAGCTGGCCGACTTTGGCTTGGCAAAG
CTAGGTCCGACTGGCGACGATACTCATGTTTCAACTAGAGTGATGGGCACACCTGGGTAT
TGTGCACCGGAGTATCTTGAGAGCGGTCAGTTGACTATCAAGTCAGATATTTACAGCTTT
GGTGTTGTTATACTGGAGGTTATCACAGGAAGAAAGGCTTTAGATCAGAGTCGAATCAAA
GCTGAGCGTAGCCTTGCTGAATGGGTAAGCATCACTTCCTGCCTTTTCTTTTTCTTTTAT
CGAACTACTCCTTGCTTCTCCCTAATGCTATAATGTCTGTACCAAGGAGAATATTGTGTT
ACTCCCTGGTATATCTTTGGTGAGTTCTGATTTCTATTTGCTTCTGAAAACTGGCAGAAG
AATCATAAGTTTATCAGTAGTTTTTAACCATTTGATTAGCATAGATTTGTTATCTTCTTT
TATTACATTTGGTCTTGCCATTGCTGAGATAAGATTCTTCTTGCATTTCTCGTATGGAGG
CCACAATAGGTTTGGCCTACACTAGACAGAAACCTATATAGTTATTTTTGCCCCTTTCAT
GTACTAGTTTACGGAGTGAGTACATCTTAAGAACCCTTCTCTAAAAAGGAAAACGAGTTT
CTCTTTCTGCGATGAAGATTAATGTTGTGACTTTTGTTCGTGTATAATTTCAGGCCATCC
CTTTGATCAACCAGAAGGATTTTACAATGTTGGCAGATCCAGCGCTTGGCAATCAGTACA
GCATGACATCATTGTTCCAGGCCCTCTCCGTTGCTCGGATGTGCCTGAATACAACAGCCA
GCCGGAGACCTCAGATCGCAGAAATAGCTGCCGCTCTCGCTCACATCTCAAAGTCCAAAA
GAACACGGCGATCAGCCCACCAGCAGTCAGCAGCTCAAGTTCACCAACCCGGGGAAGATA
TATAGGAGGAACTAGTAGTATATCATAGTCATGGGGACACCAGTGCAAAGCAATGTAGTG
TTTCTGGCTTTGTTATTATGATGATGATGACACTGTGATCAAGAACAGGCTCTACTCCCC
ACTCTGATATGGTCGAATTGCTAGGGGGGAGAGTTTTGTTTGTAGATACTAGATAGATAG
AGTAGGTGCAAATATCCTTGGCTGAGGGCTGAGGCTTGTCATATGCGGTCTTGGAGACAT
GAGCTTCATAGTATTTCTCCATGACGCTTAATCTTCGCTTCCTCTTCTGGTTGACATGTT
GCTGATGTACATGTGATCTTCAGCCTGTACCTAAAAGTGTTGATGGTTTTGTCAAGATTG
TGCTTAACCGATTTTGGTTCAATCTCTTTACCATTTTCTTTCCTTCTAATACATCAAGGT
CACCCTGTGTGTTTTCATATTTCTATGCGTATTTTTCACCATGTAGTGTTTACTCCTATT
TTATCTGGGAAAAAAAGCTACCCTTCAGCTGTGTAGCATCTGCGTGCGTAGAGCATTTCC
AACATCCGCTTGCCGACACATCCCCCCAAAAAGTACTCCGCGCGCTAAAAGATTCGTCTT
TTGGGTGCCTGATAGCTCCAACAGAGGTTGTAAAATTGTGCGCGCGCTGAAAAACGCTAT
CCTGCACTATATTTGATGTGCCGGCTTGGGCGCAGCAAACTCTAAGCTGCTGCAGGTGTA
GCCGCTGGATTGGACACCACGCACTAGCACGCGTCTGTTGGAGATGCTTCGATCCCCATG
CTGTAAAAGTGCTACAGTGGCGCACTAAAAAAATTATAGAACCCGAAATTTTTGCGCTCT
CGTTGGAGATGCTCTTATGCTATGGGCATGCCAGGTCACAAAATGTAAACGAACCCATGC
AAAGTGAATAAAATTCCTGGCAATAATCAACGGATACTATGACTTTTACACCGAGCAACA
ACATATGCCAACAATATGTTGCAAGCCAACGGTATCGAAAGAACAAATAAGATATTGGAA
CATCATTTCCTTTACAGTGCTTTTGCAAAACTCTTTCCACAAGAGAAACAGAACATGCTC
TTCCCCAGTATAACCCTATGACATCCTCAGAAACTGACCTAACAACACAGGGGTTTTCGT
GTGTATTTTTTCTTTCTCCTAACCATAACACTAAATATTGACAATCTTAATGAAACTAAT
CGGAGAAGAAATTTTACATGGATGCCTTACATTGATTTGGACCTACCAACGTTAACTCCA
TCTGACCATTGAACTCAATATGATACAAAGTACAATTTCAGCAAAACTTCATGAGGGGCA
CAAGTTGACTCTTCCTGCCGACAAAAAGACAGCTGGTTTCGAAGGACTGTTCTGGCGATC
GGGCAACCCAATCACTCATGTATATAAAGATCCTTGCTGGCATCGACGATTTTCTACCTG
ATTCTGCAGGAATTTAGCCTTCATTCGTTTCAGCGGAATTCGACTTTCCCTGATAAAAGT
AGTTCAAAAATTAATGAACCAACAGCGCCTTAGCTTTTTTATCATCTTTCTAGCTATAAG
AACCATTGGGGCTGTCATGATTTCAAAAGCTATGTGAATATATTGCTCCAACTTTTTCTT
GTCCTTTCTCCAAGGATTACATAAAGAGGTTGGTCCTTCTGTATAGATACACAAACTATT
GTATCCTAGGGCACTACACATTTTACGACGTACCTTGCTCTTCTCTAGCCATCCAAGCCC
CCTAGAAAGTAAACCCAATTTCTTGTTAGGTGTATCTTGATTCAGTTCTTGATTTATCTT
CCCAAGGTCTCCACGCGGTGACCTACAAAGGAATCCAGTAAATGAAATGTTACCATGTGA
ACATAGACTTGCAGAATTAAATACTAAAAATCAGTGAGAAATATCAGCAATATAACTAGC
ACTAACCATAATATATGCTGACAGAGAACACAGCAATGCTAAAACAAAAGAAACCAACTA
AAGCGCTATCAAGATACGATGAGTTGAAAAGCAAAGTAGTCGTGCTCGTTGCCCAGTGTA
AAGTTCATAACTATATTTTGAAAAGAACATGGCAATAATACAAGGTAATATTAGGAGGGT
GGAAGATTTCAGCGAAGTAACCAAGACATACTTTGGAGCGAACGTTTGGATGGCTTTAAC
CTGCCCAGCCTGGTACTGCTTTGTAGCTTCCAACATAGTTTCTGCCATCACAGCTCTCTT
CTCCATTTGTGAAAGCGCTACCAAAGCTGCTTCATACTTCTCCTACATATACAAGGTATG
AAACCTTATGCATCTCCTCTTCCCCAACAGTATAAGTTGTACAAGTAGAAGGAAAAAAAA
CACTTCCAGAAAACAGCTTTTAAAAGTGGCTCCAAGATTAACCTGGATCAAGTGAGCAGC
ATATTTTTGTTCAGCGGCATCTCGCTCAGCACCTATGCGGCCATCTTCTGTCACTTTCTG
CTCCTGCTCCATTCTTAACAAAATCTGCATGGGAAAGTAAATGTGTGTACCTTTTAACCA
AGAAGACAGAACAAAATACTTCAAACTTGAGACGGTTATGCAATATAAAGCCAAGGCACT
AAGACAGCACCTGAAGCATTGCCTTTTCTTGTTCTTGCTTATCTTCAAAAGTTTTTCGGA
GTTCAGATACCTCTGCCTCCAATTTCTCAACCTGTGAATCTTCTCTAAGTAAAGAACATA
TAGACCAAAATTTAAGAAAGGGAAAAGGGACCAAAGGACTTAAAGTACATCATTACTGGG
ATAACCTTAAAGTGACTCTTTATTTCAAAACAAATACAGATATAAAGTACAAGGGTGTGT
GCTCTCTGATTTTGCTGACCATGTGGTGACTCTGGATATTGCAAAATGACTGCGGCTTTA
ACTCTGCTAATCCTAATGTTGCCATGCTGGTTGAGAAAATCATCGTCGAAGCCAAGCTAT
GGATGCTCGCTTGTGCAGAAGCAAAGCGTCGGTTGCCCCTGCACACACGTCGGCCTGGCG
TTTGATCCTCACCATTTAAGGCAGCTGTACAGTTCTTTCCTTTTTTGGTGTGTTTTTGCA
TTGTTTTGTTCTAGCTTTAGCCCTTAGCCTTTCAGTTTATTGCTCTTTACATTTTCACTG
TTTTGGCTGTAAGACCCGCGCCATCTCAGTGCCTCTTCTAATATGAAAGAAATGCATTTT
GATGCATGCTTAGGAAATAAAAGCCAAGCATAAATATGAGGGTTCAAAAAGGATGAAAGG
AGGCAAGGCGATGGGCCCTG