morexGenes - Barley RNA-seq Database

Contig contig_1560060
Source Contig contig_1560060
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1560060 (8633 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1560060

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10934	1	2302 bp	MLOC_10934.1	Available	Available	LOC_Os02g55590.1, FRAME:-1, EVALUE:0.0, 13102.m06377 protein expressed protein
CDS Structure of MLOC_10934

Contig Sequence (8633 bp)

>contig_1560060 8633 assembly3_WGSMorex_rbca.fasta
CGTGCCTCTCGCGAAGGTAAAATTGTACCTCTCGCGGAAGCAAAACCATGCCTCTTACTA
AAAAAACAAAAAACGCGTTTTTCCCCTTTTTGGGAGAGGCACGCCCGCCTCTCCCAAAGG
CAAAACCGTGCCTTTTCGCGGCATCAAAACCGTGCCTCTAAAAAAACAGAAAAGACGTTT
TTCCCTTTCGGTAGAGGCACAGGCGTGCCTCTCGCGAAGGCAAAACCACGAAGGCAAAAC
CATACCTTCAAAACCATACCTTTCGCTACCTTTCGCGAAAGCAAAACCGTGCCTCTCGTA
AAAAAAAGAAAACGCGTTTTTCCCTTTTCCAAAAGGCACGGGCGTGCCTCTNNNNNNNNC
AAAATCGTGCCTCTCGCAAAAAAAGGAAAACGCGTTTTTTTCTTTTCCGAGAGGCACGAC
CGTACCTCTTGCGAAGGTAAAATCGTGCCTCTTGCTGAAACAAAACCGTGCCTCTCGCAA
AAAAACATGAGTTTTTTCGCTAAAAAAAACGCATTTTTTCACGATTTTTTTTTATTTTTT
TCGTCCAAAAGTTACGATAGACCGGTGAAAAAACATAACACCAAAAAAATCGGAAAAAAC
CACTCAAAAAAGGCGAAAACGCGTGCGAAAAAATAAAAAAAAAATCTGAAGGGAACGCTC
AGAACGCGACACGTGGCAACGGCTAGAAACGCGCCAAGTGATGACGCGCGGAGGCGATCA
CTGAAAAGCTCGCGAGGAAGCGCTCGCTAACTAGTTGCTCCCCCCAACTAGGGGCACTCC
TCGTTGCGGCAGGAAGTTCCGAGCCGCACAGGGGATGGGGGTGTGACTTGGCCAGCCCAC
GAAGATCGCAACCACGAAGATTGCGAGCGATAGCAACGACGCACTTTAGCGCAAAAAATA
ATAATTTGATGTAGCTGGGATTTGAACATTGAATCAAATGTTACATACAACATTCTACTA
CCAGTTGACCTAATTGTTATTACTGATCAATTGAAACACCAAAACCATAAAAAACGAAGA
GGAGATCCGAATTATTTTAGGTAATTTGATTTTTTTCAAATGGAGTGTTTTGTGGAACTA
ACACTTTCCAAATTTGTGAACAAAATTTAGAAAACTGAAACATTTCGCAAAAACAGGAAC
ATTTTCTGAAACGGCGAGATTTTTCTAAAATTCCAAAACAATATTTGAAAGAGCAAACAT
ATTTTGAATTTCTCAAACAAAAGTAGAAATCTTGAACATTTTTTAAAATTTGTGAACAAT
GTTTGAAACCGGAACCTTTTTTCAAACTCCTAAGAAAATGAAAACGTGAACGTTTTTTAA
ATTTCGGAACAAATTTTGAAATTCCCACAAAAATTGGAAAAAGGGAACATATTTTGAAGC
TTTGAACATATTATGTAAAATACCGATTTTTTTTTGAAAATGTAAAACATTTTCTAAAAT
CCAAAACATTTTTTAAAATGCAGAACAGTTTTTGATAAATCAAAAATACTTTTCGAATTT
GAATAACAATTTTTTAAAATTATGAACAATTTTCGAAAATCAAGAACATTTTTTAAAGAA
ATTTCTATTCTAGAATTTGGAAAATAATTTTTGTAAATCAAAAACTTTTACGAAAATACA
GAACATTTTTTGAAAATCCAGGACATTTTATTAAAAAACAAAAACATTTTTCGAATTTGA
AGAACATTTTTTGTAAATACAAGTCATTTTTTGAAAATTCAGAATTGTTTTTTCACGAGA
TAGAGTTCCAAGATGGTTGCTGATGGCACACCCGATTCAGCGTCCGCGGTAGAGAAGATG
ATGGTGGAGCGAGGGCTTTGCGAGAGGGATATGGATGATGTTGTCTTTAATGAGCAAGAG
GCACCATCGAAGGCAACGACTCTCTCTCTACCTAAATACTTGTAGTTGGAAAGTACTAGT
CTAGTTCTCCCCAACTACAAGTATTTAGGAACGGAGGGAGTAGATAGATGGTGCTGGCAC
GAGTTCACATGGACAAGCCCTACAACCAATTTTAGTTTTTCAATAACAACAGAGCAGTGT
TGGACGTGACGCAGAATGTGAAGTTTCAGCCCTTGAAAGAAAATCTATATACCTTGCCAT
TTTTCTACCTAGGTGACTCGGAACATGTGATGCAAGAGGCTTCATGGAACTTCGAGGGGA
ACATTGTTCTTGTGGCTCCTTATGATGGCGTGCCCAAACCCTCGACGATCAAGCTTGATA
CCCAAGATATATGGATATAGATCCATGACGTTCCTAATGGTTATGCTCACCTGATCACAC
CTTTGTTATCGACTGCTGAAGAGCATCTGTTTGATGAGATAGAGTATCAAGATTTAACTC
GTAATTTTTATGGTGAAGAACAATGTGTACAAGCTACTGAAGAATGGTGTCTTCATGACC
AGGGATCTAAAGCACCAGATATACAAGTTCAAGTACAAAAGATTACCCAACGGTGTGTCG
TTTGTTGCCACTTGGGGCATGTTTTTAAGGAGCATGGCGATGACATTCAAGATTTTATAA
ATCGCAATTTTATTGAACTAGTGAACATTTTCTTAAATGTTAAGTACTTTTTTCAAACAG
TTTCATATGGGCTTGAAACAAAGAAGAAGCTTGGAAGAGCATCCGGCCCGGGTATTTTTA
CCTCAATCTGGTTTAGGAATGTCCCTGTCCGTTTTTCATCCACTTTTCTTTGATTCTAAG
ACTTTTTTATTTCGGCTTTTTTTCCATGCTCCTTCTAATTACTTATTTGTTTTTTCTAAA
ATCCATGAAATTCCTAAAATAGACGAGCATTTTTTTCAAATTCAAGAAACACTTTTCAAA
TTCATGAAAACATGTTTTCAAATTCATTAACGTTTGTGCAATTAATACAGCAATAAGCAA
CGCGTACTGTTTATGCAATTTGTTTGCCATGAGATGAACAACGCTACCTCATTTGATTTG
AATCTCAAACCAAAATAATTGACACAATGATAACTGCAAAACGAGATAATACTAAACTGG
ATGAGGCAAAGCAGTTAACAAGTACGCAATCCATCATCCTACATCACAAACTGTACATCA
ACCGAGCGGGAACAGAACCAAATACGCAAGCATCAGATTCACAAAAACGAAAAAAGAATC
AATCGACAGGCAGCAATCAAGTCAACCACACAGCGGTCCTCTAATCTCTACACTCACTGA
CGCGGTCCATGGCGATAGAACGAAACAGCCATCGCTAATCAGGCATTCCCGCCCATCGGC
GCCGGCTTGTCACCCCGGTGCGCCTTGTTGTACGCCCGGTGACGCCGCTCCCTGGCGTAG
ATCACCCAGAAGATGAGGGACAGCATCACCGCCGTCGACACCAGCACCAGCCCGATGTAC
ACCCACTTGCTGTACCGCTCCAGCCCTGGGCAGTAGTTCTGGCTGATGTTGCTGAAGGTG
TCGCGCACGAAGGTGCAGTCCTGCAGCTGCACCAGGAACGGCCCGTACTGGTACAGCCCC
AGGCTCACGTTCACGCCCGCCGCCATCTGCCCGAAGATCCGAGGGGTCAGCCGGCCCACC
GTCGTGCACACCTCCGTTCCCGACACCGTCTTGGTCTGGCACTCAAAGCTCCTGAAGACC
TGCATTTTGCACCGGCAGAAAAAAAACAATGCTGTTCAGAGTTCACCAAAATGCAGCGAT
CACTAAGCGTAACTGGCAGACACAAACTATACAATTACCTGGGTTGCATTCTCCAAGGTG
ACCTCTCCGCGGGCGCAGGTGCGGTTGCTCAGATTGGGTCCGAACGGGTTGCAGAGTGTG
GGTATCAGTGGCCCTGACTGGTTGTAGTAGAAGGGGGCCGCCACTGGAGTGAAGTTTAGG
TTTGACACGTTGGAGAGCACCTGGTTCACCAGATTCACCAGCTGTGATGTGACTTCCTTG
GTTCTTGTCAGAGACTCGTTCGCCGTAGCCGGTTCAACACAAGGGATAATGTCATCCAGA
GCAGTGTGTTCTGTTGGATGAGCAACCCACTCGTCCATTGAAACACAAGTGTCACCAACA
ACGCTGTTATGACAAAAAGGTGACAAGTAGATACGATAAGTGAACTCGTTCATCATAGCA
TAGAAGTCTCGTTATCACAAAGTAAGCAAGCAACTAGAGTACCAGTAAGTGGACCAACAA
CAAACATAGCATCATGAATGAAGCTACGCCAAAAGTACCAAACATATGAAGCTACACCCA
AAAAAAAAACATTTTTTCCCAGTTTTTACTGAGGTACATGTTCAAACATGATTCTGTACA
GGTTTTGCAAACGGAAAGGAGCAACTTGAAACAAAGCGCTATAAAAGATGTTCATAGGAT
ATATATTCCCATGCCAGAGACGTCACCAGGGGTCAGAGTCAGCAGTAAAGCATTGTAATT
AACTCGCCACGTAGCTAAAAAAGCAAAAAACAGTACACCATAGCAACCAACGGCATTATC
GCTACTATCACCATATGGATTTTGTTTTCAAACTAACCCCTTTGGTACATCCTAGTTATC
CTAAGAGAAGAATAATGCTGATGATAGACAACAGGTTTATGATCTGTACTTATCAATGGT
GAGTGGTGACAGCATGGATTAGAAGGAACCAGAAAACACAGAACAAAAGTGAGTGGAGTA
AGAACATGGAATTTATTTGGTAGATGGGGGTTCAGAGTCCAATAACCAGCAGTAACAAGG
AAAAATGCCTAGAGTGCTGCAAGGATGTAGCAATGACTGAAATCCAGGATTTTCAATGCA
GCAAGGCTGAGGCGCAAATGATGACTTCATGCAGGCACTACATCATGTGCTATCAACATG
CCGTGACCATGATCTGGCCTTGCACTGAAAAAGTCCTCGCCTCAAAACCAAATGTTTGGC
GCTAATCTTTCAAATACCCTTTAACTTTACAACATAACTATATATAAGCTGGTTATCTAC
TACAGTATTTGATTACGAAGATTGGTTGAACCTGGCTGTAGCTTATGTAAAAACTTACAG
AAACACTTCAAACAGTTATATGTGCATATTAACATCATACAAAATTTCTACTGGGTGTGC
GATGATTGTAAAAAGGTGGAGTACATACTTGTGCAGAAGAAGGAATACACCGCACAGGAT
AAAGGTCCCGGTGACTAGTATCCATCCAACAACGACCAAACTGCATACATTTGGGATAAA
TGAGCAACACGCACGGTTTATCACAAAGAAAGGAGAATTCAAGCATGTTAGCATAAACAA
GGGTCTGAACTTACATGTTGACAAGGAACTCCAGCCCGAAGATGGACAACACTGGTAAAA
TCAAACCGTCAACATGTTAGCATAAAACAAACTTAGTTTTGTTCAGAAATGCACACAGTT
ACATTCATTTTTTAACCAATGTCAAAAATCATAAGCACTTACGGAAGCCAATAAATGCCA
GAAGAAGCATTACTGCTGCAATGATGATCAAAGCTAGCCGCCTGAAATGAAATTTGTCAA
TCATGTGCGTGATAACGAGCCCCTGTCAAATTGCATCATTGGGAGGAAACTGTGATGATA
AGGGAAAATGCTACTTACACACGATTCAGCAATTTTTGGATCTTCGCAGAATTTTTAGAT
GTTCTAGTAGCGAGATCGGTAGCTGATGTGTTCAATTTCACCTGAATCTCATTGATCTCA
CCCAACACATTTGGAGGAAGTAAGAACTGTCCGATGTCAACCTTTTTTGCAGCGGATAAA
CTATCCGAGAGGTTCCTAAGGTTTTCAACAGTAAAATCCGCCTGGTCGACAACAAAATCC
AAGGTGGTCGTAGTGCTTGCATGGAATTTGCCCTGGCCGACATACAACACAACACTTCCA
GCACTGGTAGCATTGATATAATGGAACTAGTTTAGCAAACACAACTCAAAATATGCAGAT
GTAAGACAACGATCCAGCTTCGCAGATGTGAGTACTTACATTGCGGCACATGTGAATAAT
ATCAGAAGTATCAGCGAAAGGGCATATGCTACTCTCGAGTAGCTATAACTCTTGTGCCCA
CAGCAGCAATGGTGGCAGCAAATGCCAATCATAAGAAGGAAGAATAGCACAAACCACAGC
AAGGCAACGACGAACAAGGGATACGCTGTGTATCGAACGGACTGAGACAAAATAATCAGG
GGCAATAATATGTTAGCACTATCCAAGCAACAGACATAAGCAGATAACAGTGATGCAAAA
CTTAGTTTTCAAACAGACTTACAGCCCAATAGTGCACTTCGCTGATGTTCCAACCGCCCG
CATATCTGTTGAATGCATTCAGAGGGTCCTTCCGAAAAGTTCGGTGTTCCGCCAATACGA
AGGAGCTATTGGTAGTGACATTTATGTCAGCAGGAGCTTCAGCAACTGATCTTCTCACCA
CCAAGCCATGGGACAAGCCACGCTTATCTATTTTTTTCAATGAGAGTTTCTTGTTAAAAA
CCAGGAAAACATAGGTAAATCACATAATAATATTATTCCAACACATAGGCACTCATGCTG
GTATGATAATATATACTCGTATACACCTTGTTAACACGAACACGTTAACTTACAACTTGA
ACAAAAAAAAGTGTGGGGTATAGATTTTCAAAATTAGAAAACAAACGTGACACTCACAAA
TCAAAGCTAGAAGAAATTTTGTGGGGAATTAAGCCCCATATGGTGGAGAACTATACTACC
AGATGATCAGGAAAATAACTACAGGAACTTTAGCATGTAACGTCATTCGTATGCCTAACC
ACTTGTGGATAAAGTGAGAGGGGAAATCGGGATGAGTCACACTCACACATCGAAAGCAAC
AGAAGACTGGACCAGAAATGAGAAATCCATTAGGGGTACGGAGAGAATTTGAGAGCGGCA
TTGCTGAAACCCGGCTACAGGAACTTGGAAAAGGTGTGTCGCTAAAAAGAGGATGAAATA
ATTGGTGTGCCGTCACAAGAACGCGGAAGAGACGAAATTCGTGAGGCGGACAAGGTGCCA
ACACCATCCTGAAAAAATCTTCATACTGAAAATAGGCAGCGGCGTCGTGACATAAACATA
TTAGTAACAAAATTCAGATATTTTTCTCTTCTTAAAAGAGAGATACAGATTCATCGAGAG
CAGCACTCTGAATCCACCAGAAATACAGACGCGGTAGCGCGACACGTGATTTTTTTCAGA
AAAAAATTGAGGGGAGAAAAGAAGAGGACAAGAAACAGATGCGCGGAAACCTGAGGACCA
CAGGGCACTAGAAAAAATCGGGGCCGAGTATTTCCGCATCAACAATCCGACTTGGTATAG
AATACTAACACCCGGAAATCGCACAGAGATATTCTAACGAACACGCATGACAAGAGCAAC
CGCTGGTCGCGCATGAATCGTCAACCGCTGGCCAGCAATCTCCGCAACAAATCAGGCAAC
GGAAACAAGAAAACAAAGAACAAGAAACAAGGGGGAGAATTAACCTTGACCGGAGTGGAG
CGCCCGGTGGGGCTCGCGGTGCGACCCGGCGGCGCAGAAGGAGAGCGCGACGAGGAGCAG
CAGCGAGACGCGCACGAGGCGCACGGGCAATGCCATGGCCGAGCCGAGCAGCCTTCCGGC
GTCCTCCCTCCGCCGCCGCCGCCAAGCAAGATCGATGGGAACGAGGGGAGGGGCTCGGGC
GGAACAAGAAAGAAAGAAAGGGACGGGCTTTGCGAAGACGACGACAGGGGGGGATTTGTT
GGGGCCTCGCGCTCGCTGTTCTTCGCGGTTTCTGGTGCGATTCCGATGGATTTCTCGTGG
AAATGGGATGGACCGGGGTTAGAGATGGGGGATTTGGCTTTTGCGTGCGGCGGACAGGGA
GAGACTCTCCTCCTCTTCCTCACTCATAGGGGGCGGAGGGAGGGCCGCCGCATATGTGGA
TGTGGTGGTCTCTTCTGTTGCGCTGCGCGGGGCTCGGCGTGTGTCAGTGTGCCGCGTGTT
TTTCCTAAACTGCCCACGGGAAACTGCTCGGTGACTGTTGGCGTTGGGATGGAGAAGTTA
CCGTCACCGTCATGCCCCCTCGGTTACGCCCTGTGCTTTCTCTAGGGGGGTAATGACATT
TGCCCTACGGGGTAGGAGATGACTAAAACTCAACTTGGTAGAATCATAAAACTTTTACAA
GATAAAATAAAAGTTGAATTTCAGTCATCATCCGCAATGTCATCACCCCTCCTTCCGAGG
TAGAAGATCGGACCGGCGGCACCTAGGCTGCTCCGACCACCATCTGGGTGGTGTCCGGTC
CCTCCCTTCGCCTCATCCGCTGTGGTTCATGGTTGATGACCTCCAGTCAGCCGTCAATGG
CGACATGGCTGCATGGTTGTTGTCGCCCGTTCTCCTGCCAGATCCAAAAGTCGTGCTTGT
TGGACGGTTGCGGATGGCATATTGATACGTCTCCAACGTANNNNNNNNNTTTTATGATTT
CATGCTATTATCTTGTNNNNNNNNNNNNNNNNTGCATACCTTTTATATATTTTTTGAGAC
TAACTTATTAACTCAATGTCAAGTGTCAGTTCCTGTTTTTTNNNNNNNNNNNNNNCCTTT
CACAGGAGATTTTGAAACAGAATCCAAACGGAAAAAAATCACCGAAATTTTTTTTCCGTA
ACGGAAGAAAATCAGGAGACTTGAGATCCAAGGCAGGGGGCCCGAGGGGCCCC