morexGenes - Barley RNA-seq Database

Contig contig_1560054

Source Contig contig_1560054

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1560054 (5563 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1560054

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10933	2	1818 bp	MLOC_10933.1	Available	Available	LOC_Os05g45590.1, FRAME:+2, EVALUE:0.0, 13105.m04843 protein hexokinase, putative, expressed

CDS Structure of MLOC_10933

Contig Sequence (5563 bp)

>contig_1560054 5563 assembly3_WGSMorex_rbca.fasta
CGCCCGCGACCATCGACCTCAACGCCACACCGGTGGCCGGTGGCTCGTCATCCGGAGGCG
CGAGGAAACGCGCGTGGCAGACGCAAGCCGACCAGTTGCGGGGCGCGCGTGGCATTGTAT
GTCAGCGCTGGCATGACGCTGGCATGAAACATGGCCGCTGGCATGATCGGTCACGGGTCC
TTTTTTGATATGTTGATTGCGGACATGAAATGGGTCGGCGTGTTGGGCGCACTGCTAACC
AAATCTAAAACAGGACGGACGCTGGGCGGGCAGCCGACCCAAACAGACAAAAGGCGGACA
AATTTGTCGTCTGTTTGGATCGACCCGTTGGAGTTGCTCTTACAGTATAATTGGTGCAAC
AAACCCAAATTACAATTATCATGGCATTAGTTCTCAAAAACGTGCATGCCTTCGCCTTGC
CTAGACACGGATCCACCTCCTCCTCGATGGACCATCCCAGTCGAGCACTCTAGCGGCTAA
GCAAGAGGAGGTGGAGGAGATCTTCACCCCTGCCCTCCTCTCCTCGCCATCACAAGGATG
ACAAGATGACTACTTCGTCCTCCCCCTCCAAGTGAACGAAGATGGTGAGCTACCCATCTC
CCCCTCTCTACCCCACATATGTGTTGGTTCAGTTTGGGTTTAATTTGTATGTACGTTGTA
AGAGCATAATTTTCTTCAAATAGTTTTGATGGTTGATGAAAATATCTTTTGCGTACTGAC
CGTACGTATTAAGCTTTCAGAGATTAACAAGTGACACAAGATGCTTTTTTTCCCCTCAAT
GGTTAAAAGAGAGGATGGTTATTTTCTATCGGTTTAGTATTGTTAGTGGACTTGAGTCGT
AGGAATATTCATACTATAAAGAGGGGGTCCGCATGTGGAAATGTTGGGTGGACACGTACA
CATTTGAACCCCTTCCTTTCCCGGTACTTTGGAGCTTCTGATCTCTCTTAGGTCATCAAA
GTGGAAGTACCGCGCTATAAAATTTGGCCCCATTTCAAATGTAGGAACTGGAAATGTAGG
AATAGAAAAAGCGCAGGAATTGGAATACCATGTATACTAAGTTCCCACATGAACCAAAAC
CACGGAAAAACTTCAAAATCGTCATTTGGATGACACGCGGGAAGTGTAAACACAGAGAGA
AGAAACATCCAACCAAAATTCCTATGGAATGCAATCCATAAGAATTTTTCTCCAATCAAA
ATTCCTACGGAATGCTACAATGCATAGGAATTTCGAAGGAACATAGGATATCAACTACAT
TTTGTTCCAAATCACAACAAAGGAATTTTCCCTATAGAAATCGTGTCTTTTGAATTTCTT
ACGTTTTTCCTTTGTTTCAATAGGGGCCTTCACTTCTTATGATAATATTTGTAATGCCAC
TTCTTCAAATTGCCAGAACTCTAGTCCAGTTGAGATGTTGCAACAATCCACTTGAGATCA
CAAAATATGTTTCACTTGTTTGAAATTACTTGAGAGCCGAATTTTTGGCTGGAAGACAGA
ATCGTTTTCCTGCATTTATACAGTTACAGAGCTACCAGTTACTAGTTAAGAGACACACCT
CTCCATGGACGCTCCAGCTACACACAGACACGATGCTGGCACGACTCGGCATCGCTGCTC
CTGAGGAACAACCCAACATATATCTATATCCAGGCTACTATGGCTCCTCAGACCTCGGCC
TCGAGGTACTGAGAATGAGCTGCAGCGAGGAGAGCGGCTCCGATACCTGACCCATCATTC
GCAAGCTTGATGACGACGGAGGATGATACTTCCTCCCCTAGCATCTCGCGCAGGGTGCTC
TCCAAGGTTTCGCTGAAGATTGTGTAGTGCTCATAGAGCCCGCCGTCCATGGCAATAACC
GTCCTGTGCTTGTCGCTACTGGGGATGTCCCGTCCAAGCTTTTTGAGGACCCCGTGTATC
CCTGCAGCAGCGAGGCGCGCCCCACGCTTTGCAACAATGTCGCATACAGCCACAACTAGC
CGCCTCGTTTTAAGTGAGGTGCCCTGGATCTGCAAAATAAATCAAGGATTTGGATGTGTT
CAATTAAGTTTTACAATGAAGGGAATATTTGAGACAAGCGCTAAAATGGGGAGAAAGGGT
AAGGCGATTACCCCCAGGACATCTTTAAGTTTGGCTCCAACTGTTCTGAGATCAGGTGAT
GTGTCGTGGTGCATCATTGACATATGTGGCGTCCTGGATACATCATCTCAAACTCTCATT
CTCTGGGTATGTAAACAAAAGATATCCCACAGGAAAATGGTGTGGGTGGCAGACAGAATT
TATCTAACTTCTTTAAAGACCGGACTAATGTAAAACTAATAATCAGGTATGAACTTATGC
TGAGCAACTTTTTACTATGTCAAGTATGTTGTCAATGCATTTATACTGGGAGCTTATTAG
CGGATCAATGCAGGAATTCTAGCCCTAGCCCATATAGACTCTTCATGGTTACCGTTTTAG
TTCATCTATCTTTCTACTTTAATTCAAGCACGGGAAGACAAGCACTGTAGCATTTCTTCT
TATCTGTGTTCCATACTTTATTATGAAACACAAAATCGAGTTGAGACTACACTTACCTAA
GAATAAACGGAATCTTTAGTTTTGGTGGTATATCATCACCAAAAAGTGAAGCTTCTTCAG
TCATCTTTAACAGGACTCTTCTCACAATTTCCCCCAAATACATACCAGAGATCAGCTTTT
CATAAATCTACAAAAGAAATAAAGTTATAACCAGCAGTGAAAGAAAACAACAAGATGTAT
ATCTTTAGTATGAGACCTGTTCACCAGGATTCAGGCTTTCTGCATCTAATGCTTGATCAA
ATTCAGTCAAAGGGAGGTGGGACGATCTGAAGTTCCCCCATTCCATATTAATTACCTGTG
AGAAATCATAAAAATCATGACAATCCTGACAACTATCTCAATCTCAAGCAACATGACTTT
TGATAATTACAGATGACGTGTTGTTTCTTCTCTTGTTTTTCACATTCATTTATTTATTTT
TGGCATTACCATACTTTTTTTTTGAACACCTGTATAGTTTTTGCCCTGTGAAGCACAATA
ACACTCACCATATCTCCTGACTTGGGAAGGAGGCCATGCCATTTAGGAATTGCATTGGCA
CGTTCCACGTATGCTGCATTGGTACCTGTACCTAGAATAACAGCAGCAACGACATCACTG
TCATCATATCTGCCCCCAGCCAATGTCCCTATAGTATCATTTACCTGCATAAGATCATGC
AGGTACATGTCAGGTTATAGAAAAGATAGTTGTTAGAGTTTGGACACAGGATATATAACA
AAAATTATCATGTAACTTTCACAGCAAAGAAACTAACCAATGCTGTCACTTTCATATCAA
GCCCCTGACGGTCCAGAGCACTGCTTAATTCAGCCACCACATCTGCGCCTACCTGACTTC
ACAGCAACATGCAGTAACTATTATGTTCCAGATAGATTTGCAAGTTCCAGCAACCATAGG
TGATACGGGCATAATTTTGAGTAAACAGTGTATGTTTCCAGTGAAAGGTCAAGTCTTGTC
TGACATTGTTAGGAGTATAATATTAATCTTTGTGATGTTTATGAGAGAACTAACCGTTTC
ATCAATAGAAAAACCTTTAGTCCACTTGATAAGAGTTCCAGATGCAATGGAAGACTGCTT
TACTGGAAAAGAGAAAGTAAAACCAAGTTCTCTTTGCCTTCCCTCAAGAAGATGAAAATC
TTCACCCTCTGAGGAAACAAATTTTGCCAAAGCAGCGGCAATAAAATCAAATAGTTCCTG
AAAAAAAAAACATGACATGTGACAAACTTATCCATTGATCAGAAAGGGTGCAAAACTGAC
TATGGAACAATTTTACTTGCGAGGTCCCGGTCATTAAGTGTGCCGGGATTGAGATCTCTT
CACATTCTTGCTTCACAACTCGCCCTTCCTTGCCTCCTAATTGAACACGTAAAACGCGGA
AATTTGTCCCTCCAAGGTCAAGTGCATAGAACAGCCCCTTCTCTTGCCTGCCAATGTGAC
CCTTGACATGTTAGATATACAAATCCTAAGTGCAAATGCATGAAATGGTTCAATGATTGG
CTGGAGGCTGTAGCTCCACCTATTAAGTTTAAACCCGGTGTGTGGCACTTGTTAGTATAA
GATACCCATCATGAGTCATTCCCCGCTCAGAATATCATCACCAACGGGCGACGACTAATC
TATAGGAAACTAGAATACAGTCCCAGGAGATTCTCGCTAGAGACTTGAGCGCCCAAAGAA
GAAGGCGGTGGTTAGCATAAGATACCCATCCCATAGGATTTACACACAATTGTTACTCTG
GGACCCTTTGTGTAGTGTTTAACAGAAACATACAGAAAGACCATCAATTACAGGATTACG
TGTAAGCACCGCAGCAGGTGACCAAAAATTGACTGGCCTTATAGTTATAAACGATAAGAC
CAATAAACTTTCAGAAACATTTCACTTAAAGTTGCAAAGCAGTTCAGAACGACTAACAGC
CTTAATCCTGTTGGGTTCCAACTAAAGAACAGTGGTCTATATCTTGCAAGAACCATATGG
TCAGTGACTCGGTACGGTTGGCACATCCATCCAACCATAGCGTACACGAGCGAAGTTCGA
AGAGCTAATCGGTAAGTGACAGTCTTTCCCCCTCCTAAAATCATGTAATGTAAGCAATAA
ACCAAACGAATTCCCCTCATTTTTCTAAACCCTGCGACAAATTTGCCTCAATCTATTACT
AATGAAGTCGAAAAGAGTATCATGTTTCCCTCAGATACACATACACGCCCAGTTGGCAGA
CAGGGTCTAGACAAATCATCATCGCAACAGTAGTACGGCCACAACCTTCAAACGGTCAAA
TCCACAGGCAGAATCCTGCCCATTTCACCGAGTCAGGAACCCTACCCTGCAACCCATTTC
TAGCACAACACGTACGAGGTGAGCCGCGACAGCAATCCCTCAACCGCGGAGCAACCCAGG
CAATAGACAGCTACAAAAAAAAATCCATCACGCGACCGCTTCTCCTCCTCGTTTTTTATC
TCTCGCAGGAACAGACGGAGGAAAAAACAAGGGCAGATCCATCGGACCTGACGACGCTCA
TTCGCGACAGGCACACCGGCTCCAGAGGAACGAACGAACGAACGAGGTAAGGCAAGGCGA
GGGAACCTCCCGAGCCTCCAGCCCGGCGGAGGTCCCAATCGAAACAGGCACGCACACGGG
GAGAAGGAAGGAAGGAAGAGAGAGGCGAGCGTTACCCCGAGGGGAGGGAGTCGACGTAGC
TGATGATCATCCCGAGCTTGCTGCCGCCCTCGGAGGCGAGTCCGGCGTGCATCTCGACGG
CGACGGCGTCGGCGACCTGGCGCAGGCGGGCGGGCGGCGCGGCGCAGCGCTCGTCGAGGC
CCCGCAGCGGGGCGTCGGCGCGGCCCCACCGCTTGGCCTCCCGCATCTGGCGCCGCGCCA
GCAGCGCCCCCCCCACCGCCGCCGCGCATCACTACGCAAACCCTCTGCCATCCGACGAGA
TTACAAAGAAGTGGCACACTAGACAACAGAGCCAACACTCACA