Map Locations of contig_1560028 (9483 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1560028

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10916 3 1678 bp AK355834 Available Available None
MLOC_10915 6 3748 bp MLOC_10915.1 Available Available LOC_Os03g21270.1, FRAME:+1, EVALUE:0.0, 13103.m02547 protein expressed protein





CDS Structure of MLOC_10916






CDS Structure of MLOC_10915






Contig Sequence (9483 bp)

>contig_1560028 9483 assembly3_WGSMorex_rbca.fasta
TCCTTGACCAAAAACAGGTGATACACTCGTTCACAGCTAATTGAGCTTATGAAGTGTGGT
TCAGATTTTCGTCGCTGCATTTGGCTGAAAACTGTGTTTCATGGATATGGCATATTGAGT
CTTTTATGATTCACAATCTCTGATATAAGTTCTGACTCGCCCAGTATTGTGAAACCTTTC
CGTCATCAGGTATGAGGCAATTGCTTGTAATGGGGAGAGCGCCGAATCAGTAGCATCTGG
TCCTTTTGACCAACTAGTCCTGCACTTGGAAGATGCCAAAAATTTCCAATCACGTTCATC
AAGTGGCTCTTTTAAGCTGTTATTGTCTGGGGATGGAAAAGGCTCTACCTGGTTCACAAA
ATCCACCTTAGAGAGGTATTTCACCTTGACCTTTTTCTAGTTCCTTTTGTTTCTTACAGT
TGTAATTTTAACTAAATTGAACATCCCTACCAGATTCCTACATATCGTAAATTCGCCTGA
TGCATCAAAAACGGCGAATGGAATTTTACAGGAAATGTCTCAGCTGGAGGAAACTAGAAA
GTTTCATGATTATCTACAGTCCAAGGTATCATTATTTTGCCCCAAAAGAAGTAGACCAAA
GTTTCTGTGCTAAGTTTGCCTGCACATTTAAGTTTTGATCTTATCTAGAAAAACAGCAGA
TGCTGTAAATAACAAAATGCATCTTTTATGTAGGAACAACAAAATCTTATGGGTGGTGCG
CTGACAGGTACATTCAAAGAAAGTTTTGCTTCTTCCATTGTTCTTTGTACACGAAAGCCA
TCACAAGCTTTCAGAGTGTATGGCTGTATGCGATATGGCTTTGTTTTCCTTTTTATGAAG
CCTATCTAATCAAATTTCGGATTCACTTTTACCATTTTTAGTGCTATGAGTGGTGGACTT
AATAACGATTTAGTTCTATTCTTAGAGCCTGTTACTCATTTCCTGGTTGAAATCACATTT
TTTGTCGAGCCTAACACTCAAATAGTTGACGAATCACAGTACTTCATTGGTGACTTTAGT
TAGTTCCTTGACTGTTTAGTTGGTGACTTTAACCAACCATTGTGTTTTGATACCTTTAAG
ACAGCAGACCACTACTTTGTTGGCGCATTGAGGCCTTTGACATACTTTCCTCTGTCCATC
CTCTTTGCTTGCTAGTGTCCGTATATAACCAATCCTACCATCGTACCCATGATTTTTTGT
CTATCAATAAAAGAAATTCAGCTGCCTGCTGCAAATTCTAGAAATAATCTATCTGTCAAA
GACGTGAAAACATCATTTTTTTCTGCTGTCTTGCACAATATGGCAAAGCCTCACATATTA
TTTATATATGCAAACACATTTTGGCAGATACTATTTGCTCTAGTTGAATAAGTTCAACCC
TTCTTTTGACTTAAAAAAATCCGAACCTGGGGCATTTGGTCTGGTATAAAATGCTTTGAT
ATTCTAAAATATTATCTTTGGTTTTGCTGAAAATTTTCACACTTCACATTTCTGCATGCG
CACCAATGCACATGAAAGTACTCTATTAAAAAAATTGTGCACTAAAAACGTATAGGTAAC
TGTTTTAAATCGTCATGGATATTTAGTTTTGACTTACAAGCAATTTCTATGGATGGCAAG
GGATTTCTTTATAGAATGTCTTATTCTGGCTTATGTTGGTACAGTGCTCAGTTTATGATG
ATATTCTAATTTGCAGGTGGTCTCTCCAGTACCATTGGCAAACCACAGCAGGTAATTTCC
ATTTGTGCAAAACCTCCGACGGCTTTATGTTTTTGTGCATTTTTATGTTTTGTTTGCTCA
CATTTTAGTTCTCAAAATTACTTTCAGGGAAATATTGGCCCAAATTCCTCAGTGGCTACA
AAGTAAAGCCTTTTCTTTTTTCCTTTTTTTGTCACTCTATTTTGCCCATCTATTAGTTGA
CATTTTCTATAACTAAATATTGAAGGAATGAGTTACTTCGAGCACTGGATTTGAGGCTAT
CAGCACTGAAAGAAGAAATCTTGGTCTTATTGAGTCGAGCAGTTGGCTCTAAATTGTTGA
ATAAAGAAGTATCAGATTTGTCTGGTTTTGTTCAGCATTTTGGGACATCAGAGTTTAGGT
GTGCCGCAAAAATCACTACATACTTATCCTCTTTTTATACCCTACAATCAGGTCATTTCT
AGAAGATTTTTCCACTGCATTTTTTTTTGTGTGATACAAGAAGCTAATTGTTTTTATTTC
TCGTTTTGCTTTAGTTGGTTGATGAGGTGTCTACTGTTGATCCGGGATTGCCAGCCCTCT
GTGCTCCCCCCACACCAAGCTTCTACCGCCGAGAGAAAGGATGATGCACTTGAGACTCGT
GATATCAGCTCGCAAGCCAATATCCAGAGGCCCATTACCAATAATGTTTCCCCAGCAAAG
CTTGCACAAGTTGAACGTAAAATGTCAATGGAAAGCGATGATTCCTCCGAGTCCAGCGAT
GAAGATGAAGCTGTTGTTGAAAGAAGCCGCCCCCTTATGAGATCTGCTTCTCCTAGGAGG
TCTGCTTCTCCAATGCGAAGGGTTCAAATTGGGAGATCAGGATCTCGCAGGTCAACGCCA
ATTGCCATCAAGAGCCTAAGTTACTTCCCTCCTAGCCAGAGAGTTGCTTTGGACAAAGAT
GATGAAAGCAGCTGCAATGGTGAAACAGACCAGCCGCCAAGGAGATCCGACAATAATGTA
AGAAGAATGAGCGTGCAAGACGCGATTAGCCTTTTTGAGAACAAGCAGAAGGGTGAGAAT
CAGGATTCTGAAAGTAAGAAAGCTGGCTTGGTCGCTACCAAATCAGTACTGCGTCGATGG
AGTTCAGGAATGGGTGACTCTCTGAACAGCAATACATCGGAAGAAAAAACTTCAGATTCT
ACATCTCAAAGCAAATCTAACAATATGGCTTCTGATGCAGAGAAGAATGAAGCTGAATTG
CAGGCTGAGGCAGATGCAGCGCCAAACAGTGTAGTTGCACCTGAGGCAGGAAGTTACGAT
GCTGATGGCCATGGCATCACGGTGTCGGAAATGGAAAATCTGGTCTCATCCCACACTGAA
AATCTGATCTCATCCCACACTAACATTTCTGCTGAACAAACACATTCTGGGCAGGAGTCA
AACAGTGACAGGGCAATGGCCTCTGCTGAGTGGAACCGCCAGAAGGAAGCCGAACTTAAT
CAGATGTTAATGAAAATGATGGAGGTCATGCCTGGGAAGTTTGCAGGCGCCAATGTAACT
GCTACCGGGCTCATTTCTGCAAGTGAGAAGAAAGGCGGACTTCAAAGAGAGAAGCGAGAC
ACCAAGGTTCGAACAGAGAAAGGTGTAAAGCGACCAGCAAAGGAGACGAGCACCAAACTG
TTGAAGGAATCCGTTGGGCAGAACAGAGCAGCAGTTACCCCAAAGACTAGCATCATAACA
GAGAAGCGTAATTCACCTATTCCACAAAGGACAAGGAGAAATTCATCACCTCCAGTCCTG
CCAAAGGAAGTGATCTCAAAGACACCAGCCAAAAAAAGTTCCCCCAAACCATCACCTGCA
CCAGCTACCCGTAGTTCATGGTCAGGATCTTTGACTAAAGCAACTAGTAGTACTGCACAG
AAAACTAAAAACTCTCCTGGAGCAGTTTCAACATCGACACCAACTAGCCGGAGAAGGACC
ATGGCAGCATCCTCTGCACCTCAGCCGATTTCAAAGGTGGAAAAACCCCTTCAAGCAGTG
AAGAGCAAGAAAGAACCTGTGACTGCGACAAAGCCAGCCATTAAGGCGCAGGAAGATAAG
AAGACAAGGACAGCAACAAAGCCAAGCAGAGTGGCTAAAAGTTCACCTGCATCAGAAGAA
AAATCAAGTGCAATGACAAAGTCAGGCATGTATAACAAGGTCCCCAAAAAAAGCAGTGTT
GTACCAGTAGAATCCAAACCCGTGAAGAAAGCCAGTGGGTTTAGTCAAGGCGTTGGTTCT
GGTGCTGTTAAGAGTAAAGTGCCGCAGCTTAGTGATTCTTCAAAGGGCAGTGGAATTGTT
ACCCGTGCGGAAGATAAGGAGCAATCTCCTGTGACAACCGAGCCAACTACCAAGGTACCA
GAGGCTGATCTTGCTCAACCAGCACATGATGTTGATGAAAATTTAGAAATTTCGATCGAT
AATGACTTGCATGTTGAAAAAACAGAAAACCCGGGCTCGAGTTTAAGCGCACCCGAAATC
GGCTCCAGTGACCAGGTTGAGCCCTCTGTCGTTGAGGTCAAACCTCTTGACGAGGACATG
GACATCTCATCAGCTGCCTGGGTAGAAGTGGATCATCAAGAAGTTACTGATGTGGGTGAA
AGCGTTACAGGCGAGGAAGTCACCTCGCCAGCAATTGAGCCATTGCCGTCATCAAGCCCA
AGAATCCGTCATTCCTTGTCACAAATGTTGCAAGCAGATAGCAACGAACCAGAAATAATA
GAGTGGGGAAATGCTGAAAACCCACCCGCAATAGTTTTTCATAAAGATTCTCCAAAAGGA
TTCAAGAGACTTCTTAAATTTGCTCGGAAAAACAAAGGAGACAACAACACTAATGGTCTG
GCAAGCCCATCGGTGGTTTCTGATGGAGAGGATGAACAAGAAGAATCCGGTGCTAGTGAT
GGTGTAAATTCCAGCAGGAGAACTTTTGATGGTTCCAAGACTAATAGCATCTTATCAGGT
ACTTTTCCAGCCATAATTCAGTGAGAGCTTCTCATCTAACATACTGTAGTTTTTCAAGCT
CACGCTTTAGTGCTTGAGCCTCTCAGTATTTTGCATCTAAAGTTCCTTCCAAATGTGCAC
GCGGCAACGTAATAACGCAAAGCAAATCTACATAAACAGAACAGCTATGTGTTTCTGTGA
AATATACAGCCACTAGAGTACCGTTGTCCCTGAATATTTGTCATGTTCACGAAATAATTA
TTTTCCTATATGAATAAAATTCCAGGTATACATTGTTGAATCTAAACCTCCTATTTTTCA
GCTCAATCAACCACCAACAGCTTCAATGCCACGAGCTCGGATAGGCTACGGGACAGACCT
GGAGCTGCACCGTCAACTAAAGGCTAGTTCCTTGTACCCAAAACAAAATTATGTTCACTT
GTATTGTATCTAGAGTTGAGTAGACGTGAAAGCACCCCTAATACATTCATTTGTGCCTCT
TTGTACTTGCAGCAGCATCAAGGTCATTCTTCTCCCTCTCAAACTTCCGGAGCAGCAAAA
CCGCCGAGTCAAAGCTTCGATAGATAGCATGCATGCCGTTGTTATACGTGGCCCCGTTAG
ATGTAAAAATGGTTTGAGGTGATTGATTGTTGAGAACGGAGCCAGGTTGTTTGTATCCGG
TTCTGCTTTCCCGCTGTCTCCTTCGTCTTGCTGTACATCTTTTAAGTATTTTTGGAGTTG
TTTGAGAGGACTGGTATGTTACCTTTCTCCTTCTTTCCTTTTTGCTGGTGATCTTGACTG
ATAACTGCCGCAGAAGACAGATTTAACTGCATCCAGTTAGTTGGTTATATCAGGCAGCTT
GACTAGAACTGATTGATGATCCACTGTTGGTGTCGCCAACCTCTGAGATTTGAAGCTAAA
ACTCTGAAGGCTTATATGACTTGTTGTTCCAAGTTCTCATTTAGCTGTTTGGCGTCAAGA
TTCTCACTAAATTTGTTCTCATTTAGCTGTTTGGCGTCAAGATTCTCACTAAATTTGTTC
TCATTTAGCTTTTTTGGCGTCAAGATTCTCACTAAATTTGTTCTCATTTAGCTTTTTTGC
GTCAAGATTCTCACTAAATTTGTTCTCATTTAGCTGTTTGGCGTCAAGATTCTCACTAAA
TTTGTCCTCATTTAGCTGTTTGGCGTCAAGATTCTCACTAAATTTGTCCTCATTTAGCTG
TTTGGCGTCAAGATTCTCACTAAATTTGTTCTCATTTAGCTGTTTGGCGTCAAGATTCTC
ACTAAATTTGAGTAAACGCTCCTGATTAGATTTCACTCGGTTACCATGATCTGAAATGCT
TTTTCAACAAACCTCTACCCAGGAAAAAGAGGCCCGAAATAGACACCGCAACCGCATACG
ATCACGCCACACATAGATACAGACAGAAGTGGTGGACATCAGTCCATTCAAAGGGAAGAA
AAAAAATACATAGGTGAGCCCAGGTGGACATTTATTTACTACTGCACACATAAGCATGGC
CGTGCCCATCACAGGTATCCAGCAGCGACTTAGAGAAAGGGAAGGGGAGGGGCAGATGAA
GGATTCAGAAGGGAGGCGCCAGAGACTTGGATAAGAGTTGGCTCATAGTGACGAGGGGCC
TCAAAACCATGGAGGTTGATGAGTGTGGCCGCAACGTTAGCGAGCCCGGCATCCGGAAGG
TCCTTCCGGAATCCAGCCCCTGGCGCAAGCCCTGGACCTCCGATGGCGATGGGGACCTGC
AGCGTGCCGGGTTCAGTTAAGAAAGACGGTGAGAACTCGAGACACTCGTCGTCGTTGGAC
GTGGGATGATGAAGCAAACAAGCATATCCGATGCGGACTCACTGGATTCAGTGTGTGCGA
GGTAAGGGGCTGCACATTCCCGTCTTTGTCGCGAATTGGTTTCCCGGATTTGTCTCTTTT
CACCATGTCCTCGGCATTGCCATGGTCTGCGGTGACCACGAAGATGCCGCCTACTTGTTC
GATGGCGTCAAGAATAATCTGAATCAGAGAGACAATTGTGACCATCATACAGTAGTAAGC
AAGCAAGCACATCCTTTCACGCGTCAACACCAGCTCCATTCGTGATAGGCGTGCACTGCG
GGGATGCCATGCGTACGTACGTACGTACCTTGACGGCTTCATCAGCGGCCTTGCACCCAA
CGATGGTGGCTTCAAGGTCACCTGTGTGCCCAACCATGTCTCCATTCGGGATGTTTACCC
GTACCTACAAAACCACCACGTCATTCTTTTCACTACTACTAGACACCAGTACCGTAGTAC
GAGTAGTTGCTAACAGTTACTCCCTCTGTACCAAAATAATAATAATAATAAATACAATTA
TTTTGGTAGAGAGGTTGTACAAATGAGTACTATCTCATTTGTCTACTTGCACATGCATGC
ATGGACTTATGCTTGAGGAGCATCTCATTGTGCCAAGTACCTGATCAAATTTGCCACTTA
GGATGGCACCCCGTGCCTTCTCTGCAACTTCCACGGCCTTCATTCTTGGCTGTTCATTAA
AGGCTATACCAGTGTCACTTGGAATTTCTTCGTATTTCTCGAGGTTTGGGTTGAAGCAGC
CCGACCGGTTCCCGTTCCAGAAAAAGGTGACATGACCAAATTTCACAGTCTCGCTACATG
TCAAAACCACAAGATATGCTCAAGTATATACTAGAATGTTGAGAGATAAGAGAGGCTCTT
TACACAGCACACCTGAAAGTGTGTACCTGCAAGCGTAGATGCGTACGCCATTGTGCGCCA
GGTACTCACCGGACGTCCTCTCGATCTCCGGGGGAGCAACAAGGTAATGACTTGGCAGCT
TCAGTTCGCCGTCATACTGAAGCATACCAGCATAGCGAACCTTGGGGAATCTGACACGGT
CGAATTTGTCGAAATCCTCGTACTCTAGCGCCTTCGCAAGCATCACCATTCGATCAGCTC
TGAAGTTAAATGTCACAACAGCGTCTCCATCCACTATGGGCCCGACCGGGTTCCCGCTTT
CATCGACGACGACGAAGGGGGGTAAATACTGGTCATTCGCCTTGGGATCATCCCTCAGCC
TTTTCACGGCTTCATGGCCATTTGGAAACTTGTGTGGGGCTTCACCAAGAACCTGGGCAT
CCCAACCACGCTTCACAACTTGCCAATCATTCTGCATAAGAAGAAGAAATGCCAAGTTAT
AATTGCAATATTGCTGCTGCAGGGTACATCCTGCAGAAACACACTTTTCTTTTAAAAGCA
GGATAGGAGAGATCACCTCATAGCGGTCCATTGTAACATACATCCTGCCTCCACCAGATG
CAATTCTTGCGTCAACGCCCTTGTCCCGTAACTTTGCCAGATCATTCTCAAGCGTCTCCA
CGAATGTGACACTGCTGCCATCCAATACGTCGCGACCGTCCGTAAGGATATGAACCCGTA
TCCTCTTGGCTCCATGTTCACTAGCCCCCTTCAGAAGCAGCTGCCAGAGCCCCAAATCAT
TAACATCAGCCTGGAACTAGTGCAGAATTAGCTCTGTTTACAAGAAATGGCGTAACCTGC
AGCTGATCGATCCTTGAATGCACTCCCCCATCGCTCAGCAAACCAATGAGGTGAAGAGTA
CCAGTCTCAAACGACTGCTGGATGTACTTAAAACCCTCCCCCTCATATATCTTCCCAGAG
GCGAGCGCCAAATCCACCAGTTTTGCACTGCACATTGTGCTCAAATGATCACTAACCTTT
GCTTAAGTAGTTTCACCAAGGTAGTTGTACTGAAATTAACTCGGCCGCGTTGGAAATAAA
TAGCACCCAACTCCTCTTTGGCAATAAATAACTCGCAAATAGCAATTTCAATATAAACAA
TCCTAAGGAATGAAATTCCCTAAAATACCTATGAAAAACCTTTGAATCAAACAAGTCCTA
AGGAGTAAGATTGCCGCCTTCAATAAGCATATAAATGAACAACTCCCTTATACGGCTTCA
CTAAATTTTCATAACACAATGCAAATCTTATTATTCTAGTTCTAGTATTACTAGTTAGGA
TAGAGCGTCCACGAGGCTAGGCTTTGGGTTACGACTGGTGCTAAGAAACCAGGAAAATCT
GTATTAAATGAGTAATTGCCATGCCGTGTTGCGTGGGTTCTTGTTTTTTCGAAGTGAAAC
CATAGAGCAATTGTTCTACGGCAAATATATTAAGTAAAAGCGTATATATACAGATGGAAA
AAGAAAAACCTAGCCTATCATACAAGTTGTACATTTATCCAATGCCTGCTCTAGGAAAGT
TCATGATTAAAAATATATACTCCCTCCGTCCCAAAATAAGTGTCGCACATTTAACACTAA
GTTAGTACAAATTTTGTACTAGAGCAACTACACTTATTTTGAGATGGAGGGAGTACTATA
GTAGCAGCAAGTCAGACTTTAAAAGGGCCCTCCAAGAGTTGATTGATGGATTATGGGCTC
TAAAAATCTTGCCATTTCTTTGCATCCAGATGTGCCAACACCCCATAATAATGATGCCAA
AAGCAATTCCATTGAGAAGTGTCTGTATGGCCATATTAATCTCATCAAGAACTGAAATTC
CTCTGTTCTTGAATCCCAAAATGGAGTCCCAGCAGCTCAATGCAAATGGGCAGTCCCAGA
ATAGATGAAGAGATGTTTCTTCTATGTTGTCGTGGCATATTTCACATTTATATGAAGGAA
GGTGAAAGGATTTTCTATGAAGAATATTTCTTGTGCTGGCTCTGTTGTTAGAGCATATTT
CTTCATGTGTGATTTTGGTAATTGATGACAATCCTTATGAACTAATGGTTGCCTTGAGTT
ATA