Contig Data
morexGenes
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Map Locations of contig_1559996 (5657 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1559996

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10893 4 1417 bp MLOC_10893.1 Available Available LOC_Os03g25440.1, FRAME:+1, EVALUE:6e-104, 13103.m03001 protein expressed protein





CDS Structure of MLOC_10893






Contig Sequence (5657 bp)

>contig_1559996 5657 assembly3_WGSMorex_rbca.fasta
TCGTTTTTTGTTTTTTGACATGAATATAGGAATCAACCAATAAGAGACGTGGGACGTATA
TGTTTTTAATGACTTGAGACTAACTAGCACAACATGCAATGGTCAGTTCATTGCATGTAA
TGGTATTAATTAGCAAAATTATATTAATTTATTAATTTTTTTGTTTTTCTCTCCGTCTTG
GTCACGGTGCATAACCTAAGATGACTTATACATCGAGACGGAGGAAGTAGTACTAATGCG
TAAGCAGCAAATTGGGAGGGCGCATGCATGAGTAGTACCAGTACTAATTAATAAGAGTAA
TTGCTTTCGCGCCTTAAACTTTATCTATTTTCAAAACGCATGCTAGTTTAACTGTGTCTT
CTAAACCGTGACGGAGGGAGTATCATTTATCTCTAGCAGGCTTTATTCTTGAAGCAAAGT
GGAACAAATAGTTTTTGCAAGTAAGCCCTATACACCGGACCGGAGGGAGTAGCAATTTTT
GATTCTTTTGGATTATGGGCTGTTACCAATTTGGACATGGGTTTACTCCCATAACCTGCC
CGATCCACACTATATAAACAGGCAGACATCTATCCTAGCCGTCGCCACAACATATAGTTT
CACAGTGTTTTAGAATATTACGCTTCCACACAAGTCTTCTTCATCCCTCCTTTCGACGTG
CATTGCGAGAAGGGACAACAGGCCTCCGGAACCCCGTCTCTCGTGATCCTGTAAGGGAGA
GGGCAATCGGATTTTTGGGGAGTGCATTCGCGCGACTGCTCGCAGCAACTACTTCCCAGA
CGACGACTTCTTCCTCGATTTCGGGAACCTCTTCATCAACGACATGGACAACAACACCAA
CGCCGGTGATCCTTCTCCCACTGCACTATATGCAATTCTGTCTTAGATTCGATCGTGCTA
GAATTTATGTTTGTAGTTTGTGCCTTAGATTGGATCTATTCATTTACTATACTAGTCTGC
ATGATTAGTTTAGTCTATGTTTGTTGGTCATAATTTATTTACTGTTTATGTAAATTAAAA
CTCGTAGTAATTTGCTCATATATCAACACCTATAATCTAACCTCACAAGCTGGAAAAGAA
CTGTCTGCAATTGATTTTACGAGTAGAGATTGGTGAGGAACAAGCGGGGAACTCAAAGTA
CCACGTACAGGGAAGGAAAGATAGGAGATACACATGCATGCACATATCACTATCCATTGG
ACTCAACACTCAATTAATTACGTACGCTTAACCCACAAACGAACAAGTCCAAATTCTTCC
AGATACCGCCGACCAATGGACCAAATTAAGTCTGCCTCATGCATGTCTTCGAAGCAAAGC
AAGAAATTCCTGTTATAAGAAAGAAAGAAAGAAAAAAAGCAAAGCAAGGAGAAACTAAAT
CTTCGCCACCCCGGCGATCCAGCCCGTCCCTTTGAGCTTCGCATGCCAAACATGTCCAGC
GGGCAACGCAAAAACGCTGTCTATCCATCGATCCATCCATATCTTATCAGCAGCATAACA
TCCAGGAGTGCAAGCAAACCAACGCCCCGAAAGAAATCCTTCCAAGCAACCGCTTCAATT
ACTCCGTCGCGTCCACCCGTCCACAAGATTGCCATGCGGCAAGCAATCTAGCAAGCCGCA
ACCTTGTCCGCCTATAAATAAATCGTCACTGATCGCAGCTCATTCCACTCGCACCAAGAT
CGAGCAGCTAGCAGCAAAGACAAGCAAGCGGTAGTGCAATCTAGAGCGCGGGACGCAACG
GTGCGATCACCTAAGATAGGGAGCCACGAGGACGCGACGAGGCGGCCACTGATGGCGGCA
CCGGCGGCGAGGAGCGTGGGCGTGGCGGAGCGCGCGCTGCGCGGGGTGGCGGACCTGATC
AAGCTGCTGCCGAGCGGCACGGTGTTCATGTTCCAGTTCCTCAGCCCGCTCGTCACCAAC
AACGGCCACTGCGCCGCCTACAACAAGGTGCTCTCCGGCGCGCTCCTGGCGCTCTGCGGC
GCCTTCTGCGCCTTCTCCTCCTTCACCGACAGCTACGTCGGATCCGACGGCAGGGTCTAC
TACGGCGTCGTCACGCGCCGCGGGATGCGCACCTTCTCCGCCGACCCGGACGCCGGCGCC
GCCAGGGACCTGTCCGGGTACCGCCTCCGCGCCGGCGACTTCGTGCACGCCGCGCTCTCG
CTCATGGTGTTCGCCACCCTCGCGCTGCTCGACAGGGACACGGTCTCCTGCCTCTACCCG
GCGATGGAGGCCAGCGAGAGGACCATGATGGCCGTGCTGCCGCCGGTCGTCGGCGGCGTT
GCCAGCTACGCCTTCATGATGTTCCCCAACAATCGCCACGGCATCGGCTACCAGCCCACC
CGCGCAACCGAGGACTTCCAGCACAAGCACTAGAGTGTTCATGGCGTCCATCGGCGTGGC
CTGAATTGATCAATTCCTGTCAATTTCTTCGCAGTGTTTGCATGCATGATCAACTTGGTC
ATCATCTGGCTGCAAAGACAAAACTCAAAGTGTGGTGGTGTGATCTGATCTGTGATGTTT
GAGTGACGTGTCGTCACCTTGTCGTTCTTGATTTGTCAAAGCTTGTACTGATACTGTGGT
GCATATGCCTGAGTAACTGGATCATGATTAATTTGTCAAAAATATTTATGCCATCGTCAA
GACTCAAGACTCAAGGGCCGTATGCTGTTATTTTTATTTTTATTTTGTCCTTTTTATGTG
CCGAAACCAACAACCAGGGTAAAAACTCTGCGATCGTCAACGGGCTGCTCCTCTTTGAAG
ACACCTACTTCTCCGTCTCCCATTTTTAAGCCAGCGAGCCATTCTGGGAACACTAAGAGC
AAGTATAACAAAATGACGTAAACCGAAAATGTCTAATGACGTTCCAGCTCCATGAAGCTC
TTTATTTAAAAACTTTAAAATTTAACATTTAAAGTTTTTAAGAAACTTGAAAAAATATAC
ATATACATATACATAAGGATGCAAACTACTCCCTCTCTTCCAAAATAACTGTCACAAATT
TAATACTAAACTAGTACAATTTTTATACTACATCAACGACACTTATTTTAAAAGAAAGGG
AGTACTTGTCTGCGAAGTTTGATGATAAAATGCCTTTTTATGCAAGCTACACAAAAATGA
TGAAATAACATTATGTGCCTGTACGATTCACTAAATATAAAATCACGTGATTTTCTTTTT
GGACAGGCCACGCAAAAACATATTTCGTGATGAAATTTCACACACACATCTAGTATACAT
CTATATGACATGTGTATTTTTTTCAGAAACTTTTGAAAATTTGAAAAGTTGATTTTTTGA
ATGTTTGAAAATATAGATGGGTTATAAAAGTTTGAAAATCATATTATTGATATACTATCT
AAAAGAGTTTGTATTGGTGTGTTCTGTGAGAGAAAAAGTATAGTTCTATATTCATGGGGT
AAGCACATGCTAAGGGACGGTAGAGGTAACAACATGCGAGTGCAAACTGAATTTGGTACT
TCCATCTAAGATCAACTCTAGCACACCCCGCATCCCGCCCTGAGCCGGAAAATAACCGTT
AAAATGCGGGTTAGAGCGGGAAACCTGCCCGCTCAGACCCCGCATTCCGCCCCGGTCCGT
AAATATTTTTGCGGGGCACGGCAAAATCTCGACCCCAACCAGCGTATTCGCGGGTTTTCA
CCTCGTCGTTGCGGTGCCCCGCATATAAGCGAAAGCGATTGATGGAGGACATTTCAACCC
GCGCTATCCCCACCAAAGCATATTCCGCGAATATGCTCTTTTACGGGTCCGTTTAAAGGG
TCTGCATCTGTGTCAGCCTGCAAAAGTTGTTTTACGCGAACTGCAAACACGTTTTGCGGA
CCGGACGAATGCGGGGTCTGCTAGAGTTGCTCTAATGAGATTCTTCGTGCTTTAGCTAGG
CTATGCATGGTCCTTATTGTCTCCTCTATTAGTAATTGTTCATGCATGGTTAATAGCTTT
ACTGAAAATTAACTTTGTTTAGCATATATGTAAGCTATAGATTGTGCTTGTACTTTCATT
TGGTTCCACAAAACATTGAACAAATACAAAGCTTGCGCTAGAAACATCCAGTTGTACGCG
GATTAAAAGAAATACTAGAGCTCATCGGAAGGTCCATGCACTCGTCATGATGGCTGGTGA
AAAATTCTGAACATTTTTGTAAAAACACAAACAGTTTCTGAAATACCAAACATTTTTTGA
AAAAATCTGAATGTCTTTTTGAAAACGGAAACATATTTTGAGTTTATGTTCGATTTTCAA
TTCGGGGACATTTTTAAAGTGGGAAGAATTTTTTAAATGTCAACATTTTCTTAAAACTCT
CAAACATTTTTAAATTCATGATTTTGTTTGAAAAGATGAAGTTATGAAAAATCTGAATAA
ATATTTGAAAAGGCGTATATTTTTTTATCTTTATCTTTACTTAATAATAAAACAAATATT
GCTTCTGGTCGAACGTCAATAAAATTGTCCCCAATTTTATCCTAAATTACCCATTATGCC
AACCATAAATGAAAACAATTATTTGAATTTGTTTCTCTTAAAGGCATCGCCAGTTCGTTC
CTTTTAAGGTGTGACACTAGGAAAAATAGTTAGAGCCTGTGCGGCGTAGTGGCTCTAGCA
CTCGTCCTACATACAGGAGACCGAGGTTCGACACTTCGAAAATAGCTAATTTCTTCTAAA
TATTACATTTTATTTATTCTTTCTGAAAAATATTGCATAAAATTAAGAATTTTCAAAAAT
AGTACAGCCTCGGTTTAGGCATGGCCGATTGAAACCTATCGGCCTAGTCAAGACCAATAA
GTCTTAATCGGCCTTGATTAGGCCGATAGGCCTGTCAGCCTGGCTTCCGGGAGCTTACCG
CCTTGGCGAAGCCAATAAGCTCCTGTCGGCCTTGGCTAGGCCAATAAATCCCTATCAACC
TTGGATTAGGCCAATAAGGACTAATTGGTGTTGGCTAGGCCAATAGGTGCATGGGATTTA
TTTTTTTGCATGTTAGCTATTTTTCAGGCTCCATTTCTCGTCCCATTTCCCGCCAATTTT
TAGTAAAAACTTTTAAAAGACTTATACTTAGCAACAAAGAGAATAGTATACAGTACAGGC
TAGGACACGAAATTTCCAGCAACTTTTACTTTTATACTTACGTTTGTACAGCCGTTTTAG
CACCAACTCTAGTTTTTTTTTTACTTTGTAACCTTGAGCTACACCATTATAAATTGGGTT
AGAAATTGATCGGCTCCAGCTCCGGTGCGCCTTGCATGCTCTTACAACAACGGTCGTCGT
GGAAACTGCAAGAGAAAGACAAATATGCGGCGCTGGCCTCTCGAGATGTTGCAACAAGGC
TGCATGGACAGCTGCTGCAGACTACAGGCCAGTTGCATGTCAACTTTTTAGAGGTCTTTT
TTATTTTCATATAGTATATAATAAGAGCGAACCGTTTGACCAAAGCTCTTGCTTGCCTCT
CCCTTGATGCATGGCTAGGCCATAAATGTGAAACAAATCAAACGCTAGAAATACGAGACA
AACGACAAGATGCAGCAGGTTGCATGCATGCGCGTCAACCTCCTTTGATGGCTACCACAA
ACATGGAGCTCGGGCTAGCTGTTGCTTGGTGATACATACTCGTGGGCTGGTGGCACCTGA
CCCGAGTCTTTTCTCTA