morexGenes - Barley RNA-seq Database

Contig contig_1559944
Source Contig contig_1559944
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1559944 (8207 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_1559944

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10859	5	2852 bp	MLOC_10859.4	Available	Available	LOC_Os03g40780.1, FRAME:+1, EVALUE:0.0, 13103.m04399 protein transport protein-related, putative, expressed
MLOC_10860	3	1333 bp	MLOC_10860.3	Available	Available	LOC_Os12g39100.1, FRAME:-3, EVALUE:2e-24, 13112.m04043 protein expressed protein
CDS Structure of MLOC_10859

CDS Structure of MLOC_10860

Contig Sequence (8207 bp)

>contig_1559944 8207 assembly3_WGSMorex_rbca.fasta
AATATGTGTTGTGAACATGCATGATTTTTTTCAGATTTTTTCGCAATGTTTAAATTTGAA
TTTGGGCCGCAAGGTACACGGTGACATGCAAACGTGCATGTCACCTGATCCCTGTCCATA
GGCAAGATGAAGACCTGTGTCAACTGAACAATATTCTCATACTGCTTGGTCCTGACCACT
CAAGAATGCTTCTAGTTATTACTTTAATTAAGGAAAATCTTCATACGAGATAAAAGCTGA
CCTGGATTAGCTGAGTAGAACTTTAAGAGCACTCGTGAAGATGATTAAGTTCTTAATATT
GACATTAGTATTCTTATAGGACAACTTTACAGGCAATCAACATTGACGTGTTCTGCACAT
GTGACTGTTAGAGTGTTAGGTTTAGTCCAGTAAAATGAAGAAGTCTGTCTCTATTATGTG
ACATTAGTTCAGATAGGTTGCAGGTTCAATTTGCTCAGCTTGAAGAAAACCCAATTAGGC
ATTGCAAGCTTCTCTTTCTTGTTTAATTCCTACTTGTAAGACCTACTGCTATGAAGAATT
TAGCTAACAGCACTTTCTGCATTTGTTCTCTGCAGAGTCCAGGTTCAAGAGAATATGGGA
ACTCAGTACTAAAATCTGTGAATAAGTCAACATCCCAGTTCAAAAAATCTGTGATTCGCA
GAAGTGGTCCTTCAGTTGATTGGTTCCCTAGGAAGAAAACTGAATCATACTTGAAAAGAA
AGATAAAGCGTCTTCAGGTACTTAGTGGATAGCGCAAAATGTTTAGCCACTCTTTGGTGA
AATTTTTCCATAGTAAATTTTATTTAAAACCATAGCATGAGTGGATCCAAGATAATATGG
CACATTAGACCAGGTTCCGTTACACTGTTCCCGATACTTCAGATTCCCACTTGCCAGTCA
AAGTGCAATTTACTTTTCTATTCTCCTTCATGGACCTTTAAGATCTTGATTGTGCACTTC
AATGCATTTCCTAACGAGAAACTCACAATTTGAGGTCATTGCTGTCTCACTTCTCTTCTC
TGCCTGACCATAAGCAAAGAGGGAAATTGGATTAAGAGTATTTTTTATGATGAGAATTAA
AGTTATGCCTTTTGGTTTCTGCAGGAGACCGATGGTATGACCGCGTCGCTCCATGATACT
CTGGAAAATTCAAACCTTCATTATACTAGGATGGCGAGGGAGAAAATTGCAGCCAGTGAA
GCAGCCAGAAAGGCCATGGAAGCTCGCAAGACTGCCATGGTTGAAGCTTCATGGTGTAGA
ATTCTTCAAACAGCCAGGTGAGATTATGTTGTTCTTATTCTATCATGCCTGCTGTTATGC
TGGCTACACTTGATTCATTCCTCTGATATTCTGACTGTCCTTGATATGTTATTTCTAATA
GGATCCAAAACAAAGGAGCTGAAGAAATTATGGAAAAGGCCAAGTTGCATGCGACTGAAG
CATTTGAATATGCTAGAGTAATAGGTATCATGATGTATGACAAGCCTGACTGTCCCAGTC
AGCAGTATGAGGTGGAATCCTCAGCAAAAACTGGAGGAAGGCCAACTCACAAGGTTACAG
CTTCCTTCCAGACTGCTTTTGAGGTTGATATGGAGGTTGCTGCTGCAGTAAAGAAGGCAT
TTGTTAAACTTGCGAACTCTCCTGATTTGCCAAACCAAGAAGAGTTTAAGGAGCTATTGC
GGAAAATTAGCCAAAATCCAGATGCGACTGATAGTGATGTGAATTCTGAAGCTGAGCAGC
AGCTTGGTGACTGTAACAATGAAGAAACAAACAATTTCAACAATACCTTCAGAAAAAGCA
TCTTTCCATCTGATTTCAACACTACTGATGTAGAACAATCAACTGATCTTGTAAACATTA
TGCTTGAAAGGATAAAAGCTCTTCATGAAGACGACCTTGCCTCTTTGGCGGTCATTGTTG
CCACATCTGGCCTAAATGCAGCACTTCAAAGGGACAAGGGAAAGTATCATGAAATGAAGC
CTGTGAGCTACACAACTGCAGAATCACACAGACGACAATCAAGAAGGTATTCGACTGCAG
CCAGCTTTATTGATATACAAGGACCAAAGAAAGAAGTCTCGTCTGAGTTACCAAGTCTGG
ACAAGTTCTTGGTCAAGCATCATTCAAAACTCGAAAGAGAAGTTCAAGAAGCAAAAGAAG
CAGGCAGAAAAGTTACTTCAGTAAAACCTGTTGTACAAGATGTCCAGGGCCAACTCAACA
CAACGGCACTAGAATCTGCTTCTGACCTGGGCAGCATTCTTGTGAAGAATGTGTCTAGGC
TTGAGAAAGAGATCTTGGAAGCCAAGAAGAGCAACAGGTGCATTGATTCTTCTGAAGGGA
GCTGTAAGGATGCTACGGACGATGCACAAGCCAGCACCGAAGAATCTGAATCTCACAAGG
GTCAGTCAGAAGTCCTGTCTGACAGCAATGTAAATATCAACTGTTATATCAGCGAATCCG
GTGAAGAAATCAATTGCGTTGAAGCCTGTACCGATTCTTCACAAGATAAAGAAAACAGAA
TTTTAAGTTCACATAAGCTGCCACCCTTAGGTGCAAAGGGTAACCATGGTGGTAAAAGAT
TGAGTCGAATTGAAGCTGCAAAGCTTGAAGCACTTAGAAGCTTCTGCACTAAGGATAGCA
GTGAGCTGAATGTTGGCCTGGACAAGGTCTTTGTTAAGGCAACCAATAGACTGGAGATGG
AAAAGAGGAAAGCACTGGAGGAAGAACAAACCGACGTGCAGAAGCAGAAAGATCCACAGA
AGTGTTGTGATAACACGACAGCGAGTTTAGATGAGATTTTAGTGAAGCGTGTGACAAGAT
TGGAAAGGGAGAAAATGGAGTATGAGAAGAGGAATGCCTCGGGAGAAGGACAGAACATTG
TGTCACGTGATCAGCGGAAGTATGGCAACGTTGCCACGGCATCCGAGAGTTTGGATCAAG
TCCTAGTAAAACGTGTCAGTCGACTTGAAAGGGAGAAGATGGAATATGAGAAGAGGAATG
CATCAGGAGGAGCAAGAACTGGCGCACAGACTGAGCAGGAAAAGCATGGTAGCAATGACA
AAGCATCTGATAGTTTGGATCAGATCTTGGTTAAACATGTCTCCAGGCTTGAAAAGGAGA
AGATGGAGCATGAAAAGAAGGGTGATGGTGATGCACTACTGCTGAAGAAGAGTGATGATA
CACAATGTGAAGGTGGAGCAGCTGGAGGTCTGGCCGACATCTTGGTCAAGCATCCAACGA
AGCTTGAGCAAGCCAAGCAGGCTGCTGCTGCTGAAGCAAATTCGACAAGAGTCTTGAACC
GTGCTGAAGAGCGCAGGAGAGCGAGAGAGAAGGAGCTTCTGGATGCATGGGGAGGAGAGG
GGCTTGGGAGCTCGGTGAAACCCCATCTGTCCAAGATAGAGAGTGACAAGGTAATTGGTT
CTAGTATATATTGCACTAACTTATCATCATCTGAAGATATGAAATGTGCCAGCTCTTACA
TCGTTTCGACTACTTGCCAGGCTGCATGCAGGAAATCAGAGGGAGAAGTGAAGCAGGAGC
GCAGAAGAGCGAGGGAGAAGGAGCTTCTTGATGCATGGGGAGGAGTGGGGCTCGGCAACT
CCTTGAAGCCACATCTCTCCAAGATCGAGAAAGACAAGGTAACTGATTCTACTGTTACAC
GAATCCATCATCTCCAAAATAATAAAGTATCAACCCTTACTTACACTTGTTGGACTGCTT
GTCAGGCTGCATGGAGAAAACTAGAGGAGGAACAGAAGCAGATATGTGCTGCTAGTACAA
CGGAGCTGTGACTTTGCTGGGTCAGCACAGCAAGTACGTTCTATTCGCTTCCGGTCCCGG
TTCTGTTCGCGTTTCACATGGAAACTCCCTTGCAGAACATGGATGCCATCAGGATCTCTC
TCCTCCTGTATATCGTGGTCGCAGACCAGACGTTGGAAACTTCCGTTCCGGAGGAAAGTT
AAGTAAGATGTGCGACTTCCTACCAGGCAATGAATTTCGAATTTCTGCTGCTGCTCTATT
TTAAGTCTGTGCTCTCCTTACCTTCTCTCTCGCTCTTTGTTATCTTGTTGCGTGCTAGCT
CGGTATGTCTTGAACTCACATACATGCTTATCCTTGGAAGCATATGCGAGGATGTGAACA
TCCCAGTGCTTCTTTTGACTTTGCCCAAATGCCGCAAAGTTGGAAATTATCATGAGCTTA
CCGACAAGTTAAATATAGCCGGGCATATCTGCTGGGTGCTGCTATTTTAACTCTTTATTC
ATCATGTTGCTGCAAACCAAGGGGTAAAAAGTACTATAATTGAAACTGACTGTTCTTTCG
GAGATAAGATGCTGAAGTCTTACGGAAACTGGAAAAGCTACAAGCGGTAGTCTGATAGTA
TATGTGGATGGATTGCTTATTTGTATGTAAACAAATGAGGGCGGTAGATTCTGCATAGAT
TATTTCACACTGTTGCTTCCCGTGACTGCGAATTTGTAGTTTGTATATTAGTATAAGATG
CCATTACTTTTTTCAGCAGTTGCTTTGCACGCGTTGCCCTGTTTCTGCCCTGAAAGTTCG
GTGAAAAGATGCATCGTGAGTGTTAAAAGGGAAGAGCGACAATGGAACCAGAGGGGGGCT
TCACTCCTCCTAATTCAAGTAGCGGGAGGCAGAGATATTTATGGCATTGTTTGCTGCTAT
CATGTGGCCTGCCGTTACTTTCAGCTACAAGTCTGCCAACCCCCCCTTTTCTCCCTGGTC
GTTTTTCCGTTGACGCGGAGTATCATTTGCAACAAATGACGAACGTGCCAGTGTCAGATT
CAAGCTGAAAAAAACACTCGTGATCCATCTAGTTTAGCAGCAAACCACTGGGTGAAACCA
GTACCAACTCAGCAGAAGCCTAGAGTCACAGTAAAATCGATCAAGCCATCCTAAGGCTGA
GACAGCGCACCAGCCATTGCTGCTGCTGCTGCTTCACCGTGACCCCTCCCCGGAGATCAC
ACGCCGTCGCCCTCTGACGGCGGTGCGGCACCGTGCGGAGCGCCTCGTCGGAGTCGGTCG
ACGAGGAGGGCGTCTGCGGGCTTCTTCTGCCGGAGCAGCCCGTGGTGGAGGGCGTTGCGC
CGTCCCGCCGCCTCCGGTTGACGCGGCCGCCGACGGCCAGCGTCAGCTCCAGCTCGTCCT
CGCTTTCTCCGGACGGTGGCGTCGCCAGGCGGCGGCCTGCGCCGGCGTGCTCGTCCTCGT
CGTCGTCGGCAGGGAGCTGCAGGCTCAGCTCCGGCCGGCGCCTCTGCACCTGACGCTGAC
GGCAGGGTGGCACTGACGACGGGCGCCTGGTCTGGTCGCCCATCAGCTGCTTCTGGACTC
GGTACAGCCGGTGCAGATCATGAACCTTTGGAGCCGATCATCATGGCAAGGAATTCTGTG
TCAGCTCTCACCAACAAATCCAAGACAAGAGTAAGTACCTGCTGGAATTGAAACATGGAT
GCGTTTGGTCAACTACCTGCTGCCTGAAGGTCTGCTCGTGCTTGAGCATGGCCATCTTCA
TGACCTCCATGTCGCACTGCTGCACGAGCTGCTCCATCTGCGTCATACTATACTTCTCTT
CTGGCTCTTCTCGTCTTGTCCTTGAGGGGTTATAAGCTTGCATGGGACAAATAACAATGA
AAGGAGGGTGGTAGTGGTGCACTGGTACTGGAGGAAGCTGGTAGAGCCGTAGTGGAAGGG
TGTGGGGGATTTATAAACGTTGGGCAAGTGAAGAGAGGAGTGGGATGCAGCGGCGTGGAT
TGGGATGGAATGATGGAATGATGTCTCACTTGGTTGGGCCTTTCGGCATGGGATTTTGGG
GTACATCCGCTGCACGAGATGCCCCTCCCGCAGCAGACAGCTTTGGCAGGAGCCTACGTT
GTTTTTAGACCATTGGGTGGCCGTGCCCCCCGCCCCTGCAGGCTTTTCAGCATTTCTCCG
TGTGGGCAATGCGTGCGACTGACAGTGCTGTTAAACTGGTCAATTAAAATTAGTACTAGC
AGGACACGCTAGCTAGCTGTTGTAAATACTCCCCTTCTTCGCAAAGCCGACAAGAGTTAC
TAGAGATGATCGCATGCTTTGGCAGCTTTTATCATGGCCTGGCCCCTACCCAAAGTGTCA
GTACGTCTTACTCCAAAGCCCAAGATCACCGGTAAGTAGTCAAACTTGAACAGAAACATA
TGCGCACAGTGACTGACACTGGTAAATTATAGCCGTCAAACATGAATACTTGGCAGGGTT
CATAATTCAGATCCATTTTTAACTAGTAGCTGTCACTGAAAACAAGCAAAGGAGCCCCCG
CCCGCGCGCACACACACCGGGGTACGTGTGGATTGATTGATACTCATGGGGCGACACCGA
CACATACACGCACGCACGGTGTACGAAAGCTAGATACATGCATGCATGTATGTGGTGGTG
TGCTGACGAAGCGATCCACTCTTTTCGTTAGGAAAACCAAGCAGCAAGAGCTTAGCAAAA
AGAGAGAAAAAACAAGCTGGAAAAAGGCCGGGTGCAGTGCAGATGCTTGCTAATCATCGC
TTCGAGAGCAAGCAAGCAGGCAATCATCTCTGCTAGTGTGCAAGTACCATGGTGAAGTTT
AGATTAAGAATAATCACACCTTTATTTGCCCACATCGACCAAGGACTAGCTACTAAAAGG
AGCTAAGCACTGGGGCATGCAGAGAGGTGAACTGCAAAAAGGATGAGTTGGAACAAAGTC
TGAATGGGAACGGATAAGACCGGTCGTGCCGTATGTATTGGCTAGTCCGTCCACGGGGCG
AGACAATGGCGCACGCGCTGCCGGCGGTGAGAGGTGCATCCGTACTTAGTGGCGGCCCAC
CATGGACGTATGCAACCAACCCCGTTACCCGACATGAGACGACCAGACCCTCGCCCCCTC
GTTTATCGGCTTTCTCTGCGTCCGGATGGAACTGCCGCAAGAGATGAACTTGAGAAGGAA
CTGCTGGCCGATATGTTTTGTTTATTCATCTTTAATCATGATAATACAACAAACACGAAA
AATAATAAAAATTTACATTAAGATCCGTACACTATCTAGCGACGAGTATAATCACTGAAA
CAAGCCAAAGGAGTGCCGCCCTCATCACCCCTCCCTCGCCGAAACCGAACAAAACTTATT
ATAGTAGATAGTCGGTAAGTCGTCGTGGTAAGGCACATAGGACCAGCACACTAGAATAGC
AACCGTCGTCGTTCAAGAGTGATGTAGATCGGAAAGATTCAACGTGAAGAGACACAAACG
TGAACGAATTACGACCAGATTCAAGCAAATTTACCAAGGACAGATCCACCGAAGACCCAC
CTCTACACGTTCATCGACGATGCTAAACACACCACCGAGACGGGGCTAGACAGAAAGAAC
ATTATTCCAACTTCAGGGAGCCGTCACCGTCTTATCTTCGTGAGCAGGACACAACACTAC
TAGAAAAAAATGTTATTGGTAATCGCTTACTAGTAGCGCTATATTAACGAGCGCTACTAG
TAAATAATACCGGTAACGCGTGACCCAAAAAACACGCTACTAGTAAATATTTTTAATAGT
GCCCCGCGGACAGACCTTAATTAGTAGTAGCGTGGGTTGTAAGACCTGCGCTACTACTAA
GTAATAGTTGTAGCGCAGGTGAGATACCCCACGCTACGGTTAAGCATGTCACTTCGATCC
CACACCTCCCACCCTTTCACCCCACCAACCGTCCCAGTCCACTCCCACACCACTCACCCC
CTCGATCTAGATCTAGATCGAGATCCGCACCACCGCCGGCTTGCCATCCACCTCATCTCC
TCTCCTCTGTCGTCCACTCCCGATTGTGCTTGCCGTTCTTCTTCGATCACTATCGTTGCC
GTCTCTACCTTTCTCTGACCAAACCCAATCCACCCACCGCCATCAAGCACTAGCGCATGG
AGGGGTAGGAGCCAACAACCATAGTCCACCACCACGCCATGGCACCGCCCCCGATGGTGG
CCTGGATCCCAGGGACGTCTGTGTCGTTGGCGTCGCGCTCTCTCCGCTCAGCTCGACACC
CACAACCGCAACGGCCAAGTACAGTACCAGTGTACTTGTAATGCCCCAAGTGTAGAACCT
TTCCCTTTTTGGACCTACTTCAAGTGGGACCACCTTGTCAGAGATTGTGGTGTTAAGTTG
GTACCATGATTTCATGTGTGATCCTTGCTATTTCCTTCTCATGCATG