Contig Data
morexGenes
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Map Locations of contig_1559858 (6702 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1559858

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10825 1 394 bp MLOC_10825.1 Available Available None
MLOC_10826 6 1921 bp AK252610.1 Available Available None





CDS Structure of MLOC_10825






CDS Structure of MLOC_10826






Contig Sequence (6702 bp)

>contig_1559858 6702 assembly3_WGSMorex_rbca.fasta
GGGAAGGTGGGGGGAGTGGGGCGGCGGGTTTATAGGGGTTGGATCGGAGCCGGAGGAGCG
AGCTCCTGAGCCCTTGAGGCGACGGAAGGGACGGCGACGTCCGCTGCTGCTGCTGGGGGT
TGGTGACGGCGACGGCTACTCAGATCAAATCATCGGCCGCTAAACTCGCTTAGCTTTTTC
TGGATCGTTGATTTGTTATTTAGATTATTATAAAATCGATGGAGGTGTGATTAGATTAGG
CAGGTCTCGCAGAGGGTGTTGCGTGGCTACTTGGCTTTGGCTGGCTGCTTCGACTTGGAG
CGCCGCTTGAAATGGCCTGGTGGCGGCGTCCAAGGGCCATCTTGCCTCTATCTCACTTGC
CAAAGTCAGACGTGCAACCTGCCTCAGCGCTCGGGTCAGGTCAGGTGCACGCATGAATCC
GCACAGCTGTGCTCGTGTGACTGCCTGCGTACCTCCTGCGTACCAGGGCCGGCCCGAAAA
TCCCGGACCGGGTCGGGCCTATTTGTCTCATCGGGTCGGGTTCAGGTTGGAAAGTTTGAG
TCTGATGGTTAATTCCGGTCGGGCTTGGGTCTATGAAAAATAAAATTACGCCCCCGTCGG
ACCGGGCCTAGTCGGGCTTTTTCTGATTCGGTCGGGCTTGGGCCTAAAATTTAGGCTTGA
CGGCCGGGCCGGCCCGGGCTTGGGCCTGGGTTTTTAGCGTCGGGCTTTTTTTGACCCGGT
CCGGCCTGAGTAATGCCAGGTATACTTTTGGCCGCCCTCAAAAACTAGTCCGTAGGGGAA
TGGGGGACAGGGGAGTCACGGGGCAGAACCGCACGAGAATGTTCGTATTCAATCGATTGA
ACAATAAAAAGTATTATAAAAGTAAACAATATCCGGAAATGATTATTATTTTTGAATGAA
CATCGCCGCTTGCGTGTAAGAGTTCATGGTGGAATGACATTCGTGGAGAACGAGACAAAA
AAAACATTGATGCTTGAAAAATATATATATTGGAGTATCTGTTTCGTTTGAGGCGACCCC
CGGTGAGCAAGGCAGGGCAGCCGCCATACCTTGATTCCAGACAAAAATGAAAAGAGGTCG
TTGGCACACGCAAGCATGTCGAGTGCAGCAAGAAAACATGCAAAGAGGCCATTGGCACAT
GCATGCACGTCGAGTGCAGCGAGAAAACGTGCAAAAAGGCCGCTGGCACACGCACGCACG
TCACACATTGCTCGAGCGGTGGCTCCAGCGAAGGCGGCATCAAGCTCCAGCGGTTGTTCG
GGCTCTAAGATGGAAAAGAAGGGGAAGGGACCAGCAAATCCAAGAAACTCCTTACAAAGC
TGTGATTATTATAATGTAATGATTTCTTTGATATTGTCTTAACCCAAAAAAACTCCTTTT
CTAGGTTCAACCTGAATAAGCTTGCTAAGCTCATAGAGATTTATCATGATGACTTCTCTA
ATTATGAACGTGAACATATAAAAGATAATCTTGATCTATTCATTATCCATACGAAAAGAA
TTGAAGATTGTACATCTTGTCATGATATTGCAAGCCTAACTAAAATGAAGGCTGAACTTG
AAAGGCAGGTCGTGTTTCCTATTGTTTATCGCCTCATTGAGTTGGCATTGCTACTACCGG
TAGCGACAACAACAGTTGAAAGGGCCTTCTCATCAATGAAAATCATCAATACTGAGTTGC
GCAACAAGATGACAGATGGTTGGCTTAAGGACTTGATGGTTTCTTATATTGAGCAAGAGA
TCTTCAAAAGTATTGATCTTGGTAAAATTAAGGAAGATTTCAGAATGATGGTGGGCATTG
CCATTGCCTGGGTCTTCTAGACGTCATTGAAAACTTCATTAACGGTATGTTTTAGGTTGT
TGTCCTATTGAAACATGCCTACATTTTCAATGTATTTGGTTTTTTGTTTGTAATGTGTAT
TGAATCTTTCGATTTGCATAAAAAAATCTTTCCTTAAGACTTCATAAAATATTGCCCTCC
GCCTCTGATCTGTTTGGTTTCCTTTTTTATCGAGGACTTTAACACTGTCATTCCATCACA
AAAAAGTAATTTACACCCTGGTAAAACACCCACAAAGTTTTTGCCTACAATTCAAAGAAA
AATATAAAATCCTTCTTACTCCCTCCAATCTAAATTAATTGACGTAACCTTCATACAATG
TAAAGGATGCGTCAATTTATTTGAAAATGAGGGAATGCCATTTTTCATATTTCACTGTTC
ATCAGGCTGCATGCGGGCTCGTGATAAGAGCATCCATCCCAACACATTATGCATAACGGG
CATCGTGCCAAAAATACTACTCCCTTCGTCCAAAAATACTTGTCATAAGAATTAATATAT
CTAGATGTATTTTAATTCTAAATACATCTATTTGTATCCATTTACCCGATAAGTATTTTT
GAATGGAGGGAGTACCTTTTAAGGCATACTTTTGCCTAAAAACAATGCTCCAACAGATGA
CGTGTCTGTAAATTTTTGTGCTGAGTTTGATAGTGAGGACGACTCGTTCCAGGAATGTTT
GGAAGAACGTCGACTCCGAGGTTGATGACTCTGATGCTGAGTTCGATAGTGAGGACGAAT
CGTTCGCAGTCAATTTATCTTTTTTAAGTTTGAATTCATTTCCAAGTTTGAACATTTCAT
AGTCTGAAATATGGAAATATGCAATGACCGTGTTTAAAGCTTGGAAGTCTTAGGTCATCA
GTTTTACATCATCTGTTGAAGATGCTCCGAGAACATCACTTTCGGTCCTGGGCATCCGCC
CACTCTGCCAATCCATTTTCACCAACTCAACATACCTGGGTACTACTACTTCCCAGCCGG
AGCACAGCTTGCACAGGGATCCGCCCAAGTCATCTCTCCTGGCATTGGCATATGACACCA
TCACACCATACAGGTTCAGCGTCACCTGCAAAAGAAAAACTACGCTCCAAGCACAAGCAC
AGGCTCATACTGTAAAACTGCCATGTTTCAGTTTTATAACTTGCTGTCCCTCTTCATCCT
TTGGAACACTTGCCAAAGAGCAGAGCAGGGAGAGCTTCTGCGCCGGTTTATTTGTCTTTT
TACATGCAGTCCAGCAAAACCCAAAGCACCACCAAAACATCTAGACACCAGGCCACTACT
ATCTTCTTCTTCTTCTTCTTTCTTCTTCCCACAAAGGGCACACGGACCGACAGACAGACG
ACTCTGTTCTTCCTTTTTCGACAACACAAACAACTACAAACAGCACGGGAGTTTCTTTCC
GCTACTACATCTACAACAGACAGACAGACACATGGTTCAGGCTCTCACACAGCCTGCAGA
CACAGCTTCGCTCGCTTGCTCATAGCCCCATGAGGTGGTCGAGGCCCCCGTGAGGGCCTC
CTCCACCCATGCCGCCGAGAGAGCCCCCGCCGCCCATGCCACCGCCGAGAGAGCCCCCGC
CGCCCATGCCACCGCCGAGAGAGCCTCCCCCGCCCATGCCGCCAAGAGAGCCTCCTCCGC
CCATGCCTCCAAGAGAGCCCCCGCCGCCCATGCCTCCGAGAGAGCCTCCTCCGCCCATGC
CACCAAGGGAACCTCCCCCGCCCATGCCTCCGAGAGAGCCTCCTCCGCCCATGCCTCCGA
GAGAGCCTCCTCCGCCCATGCCAGCGTGAGAGCTTCCCCCGCCCATGCCGGCGATCGACA
TGTTGCTCAGCAGCTGCTGGAGCCACCGCCTCGTCACGTTATCATCCTATGTCCATGGGA
AAGAAGCAAGCGTCAGTAAACGATCCCAACTGTGCCAGTGCAGATATCGATTCCAAGATT
GTCTAGCTAGCTAGGGAAAAAACATGAGTCAGGGAACGCACATGAAGGAAGCTGTTGAAT
GTCCCGTCCTTCAGCACGGTGGGGAGGCAGCTGTTGAGCGCGGCGCAAGCCCTGCATAAC
ATCACGTAGAGATGTTTAGGAACTGGCAGTTCTACCTACGAGCTGTGCTTTTTCGACAGA
TGGCGGCACCAACCTCTGGTTCTCTGTCAGCCTGAGGTAGCAGCGGATTATGTGCTTCAG
TAACCTTGCAGATGGCTGCTCAGCAAGCGCCTGGACCATCTGCGCTAAAACAGTGGCCAC
AGCAAAGAAACGCTCAGCAGTCGCGCAGATGTAGCGCAGCCCAATGTCATCAAGCAGAAT
CTTTTGAACAATAAAGGTGGCCACCTGCAAGTAACAGTAACCTCGGCGGAGTTAGTGAGA
CTGGTGCACTTGCTACAGATCTCAGAGTAAAGAGATCTAACAGTCCAGTGAAAAGCTATC
TATGGAAGCTTTAAGTACATCATGGCTTAACAACCAGTTTGAGTTTCCTGAGTTTCTTGA
CATCCACATCCTTATTTATTAGTTACCACTAAGGTAAACTAAATACTAATAAAAATGTTA
AAGATAAAATATTCCAGTAAGATAAGATAAAGGATGATGCAAACTACAGAAGGCAGCTAC
CACATATAATCATAGCAATTCATACCCTAGATTGCAGCATGATTTCAGTGTTGCACCATG
CAAATTTCACATAAGATTAATTAACCATGCCAGTGCATTGCCAAAGGGTACAAAACATAG
ATCCAGAACTAGATGATCATTAGATTTAGATTTGTAAAAGGGGTTGAGTTCATACTGTTT
TGGAAAGTTCACTGCCCATCTCCATAGTACGGAGACATAGAGGGATTATTTCAGTTTGAA
GCAGAAATCCAATAACTTCAGAATCATCAACCTGCAAACAAAGCGATGAAAATATTCTTC
TGATATGCAAATCGGATATCCAAAATACGAAACACTAGAAAAATTTCTAACAAATCATTA
GCCCGTTCGGTTCAAAAATATCAATTCTTGTTGGGATTCCTGGGGTCCAAATCCCAACCA
GTCCATTTGATTAAAATGACTGGATTACTGGAATGAGAATACCAAAAGAACCAGATATAG
TCTAAAAAAAATACAGCCACTGCCCATCACTGTTTTCCCCTTTGGTTCAACCCTCTCTCC
ATTTAAAGCAAAAATCTATATGTACCATCCATTCCTAGTTTGCACAAATATCAAGTTTTA
AATTACCTTCACAAGAGCACCAATAACACCCAAGCTGGTAAGCCTCAAGTACTCAAAAGG
TCTTGTCTTGCTGGTAGTATTCAGGAACGGGTACAGGTACAGTGGGATGTGAGCTGCAAA
GGAAAAGGAAGAAGACTCATTTGTTAACCACTGCTAATTAAGATTTACTTATTTGGTAAA
GTCAGAACAGATGAGGAAAGATTTTCAACAATAAACAATGAAAATATTTAAGACTTGGCA
TAGAAACAGTCGCGCTCAATACCATTCAAGAATGGGATCCTGGTCTCAGGGTGTGAAGCA
ACACACTGCAATTGAAAAACAAAAGTAAGATGAAACTGAGGGGCAGATGACAAGCAAGTA
TGATACGAAAGCAGTAGTATTCTCAATTCGCCACAAGGCCCACCAAGAGTGAGGGTTTCC
TTTCTTTCAAAAATAAAAGCATACCTGAAGAAGTGCAAGTGCATTGCAGACACGGTTTGA
TGCAACTGGCGATAAAGTAGGAGGTGAAAGTGAAGGGTAGATTGACACAATCTCCTGCAT
AGATTTTCAAAATAGCAAGATAGACTGAATAAGGAAAATGCACAGAACCATCAATAAATT
TCATATTGAAAGAATCAATAACATGCACAACCACCCTAACTTAAATAACAAGAATTCCAC
CAAGTGCATATTTACTCTTGCCATTGTGACTGAATTTAGAACTGTGCAATAACTGTAACC
TACCTGGAGCAGTGCAGCAATGGTGCCAAAGGAGTGCCACAGGAGTGGAGCAAGATCTTG
AAAAATCTCTCGCTTCTGAAAGAAGAAAACTGAGAAACAGATTAGACAATGAATTTTCAC
CTCCTGCATCCCAAATTTGTAGCCATACTTCAAATGTTAAAGTAGAAGTAGTTCAATATA
TCAACTGTTCAGTTTGGGATATTGTCTTTGGAAAGTTGATGTTTTAGTAAGAAAAGAATG
ATGATGCTTGCATTAGTGGCTCATACCATGGGTTCGCACTTTTGGTAGATAAAGAAGTGA
CAGAAAAGAAATACCTACTAAACTTCATCACTTATCTAGATAATCTGCAGAAGTAGAACA
TGCTGTTCCTAACATATAAATGTCTTCCTATATAGTTCATAAACTGTTTAGATTTCTTAA
CAACCCTGATAAGTTTGCAAACTCATCAACAGGACAGGATTTCGCAAAGTTTACACAACC
CCCTGTCCTTGAACAGGGTATCTCCACCAGATACTATAATTAAATGTGCACAGCCGAATA
CAGACCTTGCAGTCTGCTCCAGCTCAAAAATATTCATTGAAAGTTCACTTTTACCAAGAA
ACAGATACATCAGGAAGCAGGGGCTATTAACAAAAATGCACTTCTTCTTGTGGTATTCAC
TCCTTTTTTTCGAAAAGGAGGCGTCGCCCCGGCCTCTGCATCGAGTGATGCATACAGCCA
TTTTATTAAGAAAGAAATAGTCTGAACCAAATACAAAGTAGTCCGAGAATCCAAATGAAA
AAACAAAAAAAGGAGTTACACGGCGATCATAACGCCAATACCGACTATATCCCTCGGATA
TACACGACTAAGGTTCAATCCTATTAGCATGCCGCCATCCATATTGGTTGAAGATAACCT
GAGCTACCATCTCCCATCGGACACACCCAGTAACCAAAGGCT