morexGenes - Barley RNA-seq Database

Contig contig_1559757
Source Contig contig_1559757
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1559757 (10875 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1559757

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10778	2	750 bp	AK357674	Available	Available	None
MLOC_10777	8	2858 bp	MLOC_10777.4	Available	Available	LOC_Os08g28840.1, FRAME:+2, EVALUE:6e-114, 13108.m02979 protein hydrolase, NUDIX family, domain containing protein, expressed
CDS Structure of MLOC_10778

CDS Structure of MLOC_10777

Contig Sequence (10875 bp)

>contig_1559757 10875 assembly3_WGSMorex_rbca.fasta
TGCGGATCCGATCTCTCCTCTCGTAGATGNNNNNNNNNNNNNNNNNNNNNTGTATGTGCG
TAGGATTTTTTTTTGTTTGTCATGCAACGTTCCCCAACAAAAGGTGCCCAAGCGGCAGAC
GGCAAAGGTTCCCAAGCGGCAGACGACAAAGGTGCCCAAATGGGCACACGGAACAACCGA
CGGACGACAAAGATTGCCAAGCCGGTAGTCGGCAAAGGTGTCCAAGCTGGCAGACATCAA
CGGCAGCAGATGACAAAGATTCTATGCCGGCAGACGACAAAGATGACCACGCCGACCGAC
GACAGCCACAACAGACGGCAAAGATGGCGACGCCGGCAGATAGTAAACACTCTATTAGCC
ATCCAACAGAGTAGGTGCGTGTGGGCTGCCGTCTAACCTCTTCGTCGTCTACCGGCTGAT
GGCAAAGACCTTTGTTGTCCGTTGTCTGGAGGCAGACGGCAAAGAAGCTCCTTTACCAGC
GCAAGCAACCGTAGAAGTTTTGCCGACTGTCCACGGAAGGCAAAGGCCTTTGCCATCTGC
CACAACTGATGGCAAAGAAGCAGATTCTTGTAGTGAGTGGATGCATCAAGTCGTTCCAAT
CTATAACCCGACAAGGGATTTTGGCCTTCACGGACAGTATTTTGGCAGTAAAACCAAGTC
TTATTCCATCCTTTAGGATGACTAGCCAATTTTGACTCGGAAAAAGGGTTGTTTGCCTTT
TCTGAATAGAAATTCCACCAAGTTCTACACTAGGGCCGTTTTTCATTTCAGTGTGATGGT
TGATATAAAAGAATTCCGTGAAGAGGGTGACGGTCGGCTTGATTTGAAGATAGACCTCAG
AGACGACATGGAATTGGCAAATGTTGTTCATTGAGTTTGGGACAATATCGTGTGGTCCTA
GATTGAAGAAATGGAGAAAATCTGTCAAGAATTTTGACCCGGGAGGGCGAAAGCCTGTGG
TCAAACGATCCGTGAAAACAACGACCTCCCCTAAGCCAGGCCGAAGAGAAGATTCTTTCG
CAAGAGCTCGCCAACCAAATTCAGGTTGAGCCAGTAGATAACCTTGGGCAGCGAGGTTTT
CTAAAGTAACTACTAACTCTTGCGATCTCACCCAACCGCAAACTTTGCTAGTTTTGGGAG
CCATTACAGTTCAACTACAAAGGGCGAAAAAGGAAGCATGAGCCGATATATAACCCGCCA
AAAGAAATAGCAAGGCAGATACAACTTAAGTAAGTCGGTACTAAGCTAAACTGAATTTCA
ATAAGCTGACGTGATAAAGTAAACCAGAATATGGCAATGAGTCGGCTGAAAAACGGACAC
AGAGGCTAAAAGGGCTTAGCGAAGTTTTTCCCGAACACACAAAGTACTTTCTACTGAAGC
AAGAAGTCAAACACATCTGATAAACATGGTAAAATAAAATAAAATTCCTAAGAACTAGGA
GAGGCGCTCGAAGTATAGCGTTCGTGGAGATCAACAGGTAGACTACTATGGATCTACAAA
TATCGTGGGGGCACAAGGGAGGCAAAAATGCATATGGTTCACAAATGGCCATGGGGCAAC
CGGATATATGGCTAACATTTGATGAACTCTGAAGAACACAGTAAACTACGACGAACACTT
GAACCCTAAAGAGGGTAATTAGACTCATCGGAGATTGAAACCGAAGGAGATGTAGGAGTT
TTGTGTTCCTTGAAGTGGCCGGAGATGATCCCAACCAAGCTCCGGCGAGGACGGCGGTGT
GATTGATGTTCTCTGGGCGACTGGTACTTCGGCGAGTTCGAGCAGACCGAAGGAGGGCGA
GAGGAAGAAGACAGAGGAAAAGTGAGAAAGGGTCCCAAAGGATCTATTTATAAGGGGGCA
GACCCGAAGTGGCGTGGCAAAAAATAGGATCTACAGTTATTAGCGGCTGCTAGGTCGCCT
TGATTCTCGCGCGTGATCAGATTTGGCGGCTATTCAGAAAAGATTCGCTATAATGACATG
TCCATATTAGTGGTCAGCAAGGTGACGTCATTGTGGAAGTGATTGAAAAATAAGTTAAGT
GTTGGATGAGGAAAATGAGTTGGCACACTAATGATCGAGACGAAGGATCAAAAAAGAAGA
GAAATGCCGGCTTGAAAACAAAGCACAAGGTTAAGTTCCAAGTTTTAGGTTTTCCTTTCA
TGTTCAAGATGAAGTTTAAATGGATAAACCCAAACTAAACTAGGGGCTAATGTTGGGGAT
ATACCCCACGGTATAACCCGCCAGGAAGTTAACCCGGCTATCAAGGTGGCAACCCAAGGC
TTGGTCAACCGCAAGCCTTGAATGTGTAGAAGCACATGGCCAAGAAGGCGGCTTATCCAA
AAAGGCTGGATCATGGGCCTATATTTGGTATGCCGACTCACAAAAGGAATGCGACAGACA
TTTACCATACTTGATAGACAAGATGAGTTGGAGTTAGACTACGTCACTGGTTACAGTACG
ACCCAAACTCTATTGTAATCTCGGGGCCTTCACCTATATATAAAGGGGAACCCCTGAGGT
AGAATGGGCAAGTAAGAAATCCTCGAGAGCTAGGTTAGCGATTCTGCACCCTTGTAATCG
AGATCATCATCAATAACACAGAAAGCAGGACATAGGCTTTTACTTACATCGGAGGGGCCG
AACCTGGGTGAACCCTTGTCTCTCGTTCCCGATCAACCCCATCTAAGAAATCACCTAGTT
GTGATGGCTCCTAGACTTAGTACTACCGCTAGGACATCTACCGTGACAAAACCACGACAA
TACCCCGTATTGTAAGGCGATACACGGGACATTGCAAGGGTCGATCACCTGTTCACGAGG
GGTGCTCGATGTTGCAAGGGCCGACTCCATTATTGCAAGCGGGACACATAATGTCACAAT
GGCCGGTACTACTATTGCAAGGCGAACGTAGGACACATGAATTGCAAGGCTCGGTTACCG
TTGCTCCAAGGGGTCACCCGTCGTTGCAATGCGACATGCCATTGCTACAACACGGGGCAC
ATGACGCTACAAGGGTCGACCATCGTTGTTGTAAGCGACTTGTTGGACGTTGCAAGGGTC
GACCCTGTTGCAGCACGCGACACGCATGATGGTTCAATGGAAGACACCGTTGTTGTAAGG
CGATATGCAGGATGTTGCAAGGGTCGATCACCCGTTGTTTAATGAGGGATGCTCGATGTT
GCAAGGATATACTTCATTGTTGCAAGCGAGACACAATGTCGCAATGGCTGGTACCACTGT
TGCAAGGCGGACATAGGACACATGAATTGCAAGGGTCGGGTATCATTGCTGCAAGCGGAC
GCTTCACGCTTCAAGGGTTGACTGTTGTTGCTTCAAGGGCTGACTATCGTAGCTGCAAGC
GGGGCGCAGGATGCTGCAAGGTCGACCGCAGCTTACACTAAATATTTTTTTACATGTTTT
CGAGTGGTGCAATGATTTTTTAATCATTTGTTGGGAGTGACAAAACAATGTTGCAACAAC
CAAGTCAATTTGCACTTTATGTGTTTTGTTTTTTGAAAACACTTCCCGAGGGATTGAACG
TGAAATGTCTGTCGCAACATCTGCATGCCACATGCCACAAACTGAGCTGCGTGTAACATG
ATCCTTGTTGCAAGACGCACGAGTAAAACACAAACTATATTGCATCGCGGAGGTAAAAAC
GAAAACTTGTGGATTGCAATAAGGCTCCTCTAACAAAACATTGCACCCAACACGAGGCTT
GTTGCAAACACTCTTATTGCAAAGCGTTGAGCGCAACACGAAGCTTATTGTAAAGCCATA
GCGAGCATATCAAACACAGAAAAAAGAAAATTAAACTACTTAAGGGATTACAACATGGCT
CGTAATGCAAAGCTTGAACGTAACTCGAGGCTTGTTGCAAAGGCTCAATAAACAAATCAG
ACGAGGCGCAATAAAAAAATGTTTAGATATTGCAATAAGGCTTGTGTTTGCGGCATGTCT
TTTTTCTTCTCATTAATGCTTGTGTTTTTTGTACTTTGGCTGCATGCCCATGGCACGATC
CATGAAGCAATCAAACACAGTGCTGATACGAAGGAGACACTGTACCAGATTGGCAGGTTA
CATGGACGAGATGAACAACTGATAGCAATGCAGATCACGAGGAGAGTAAAGTCTGAAATA
AACCCTGAGGTTGTAGAGACCGACACAGATGAACCCTTACTTTTAAATCTTTAAAGTTTG
TACCCTGACTTTTTAGATTCCGGTCTGTCCTGACCCTAGATACATTTGACACACCGGGAA
AAGCATAATCCTGACCGGGAACTCGCTTTTCTCGCTGTTGTGCGGGTCAAGCCATATTCT
TCATCGCTCCCAGCTCTCTCTCTTTCTTGTTCCCTTTCCGTATAGATACATCAATGGCTA
TCGGGGTAGATGCTTCTGAAAGGTGTCGGCGAGTTGATGAGCTGCAGCCTGCACGATGCA
TCGGCGGGAGTAGAGGCAGCGGGGCGAGCCTGCTGCCATATGGTGATCATGGAGGCCATG
ATGGCGATGGCAGCCGTGTGGATGACAGCCAAGGCAGCTGAGGAGCCGGGACGCCAACGA
CGAGAATCTATTTGCCATCAAGAGGACGAAGGCCACCATCAGGGATCACCGGACCAAGTT
CAACATCTCCCTCGGCTCCGTTCACGCCAAGAAACTCCTGCTGCATCTTATCTCCGCGAT
GACGAGCTCCTGCCGCAGCTCTCGGAGCTGGGGAATCAGGGGTCCGTTGCCGTTGTCGGG
GCCGATGCACGCAGCCACCGTGGTGTGCGCACTCGCGTTAGAGCACTTCGGTTGGCGCGT
GGCACTGGAGGCCCGTGCTGACTCGCAACACGCATACACGGTCGCGCTCTGGGTTGGGTC
TCGAGCTATGTCAAGGACTCCATCTCGCTGCAGCGCCGCTATCCCGGCTCCTCACGCCGC
ACTGGCTTGAGCATGTCGCCATGGCCGCCTCCCGGTGCAGCTCAGCAAGCGTAGGCTGTG
GGCACGCGCGGCACGGGTGACGACAACCACAGCCACCCGAGCTTCTTCTGTATTCACGAT
GATGTCGACAAGCACCGACTGAGGACCGAAGTTCTGCCCGAAGACATGCACGTACAGGGA
TGGCTAGCTTGATGCATTCCTGAACTAGTCTATGACGTACAGGGGTACCCCGTACATGGA
TGATCTTTTTTTGATACACGCACGCAAGACGTCAGACACGGATGTATTGCAAGTTTGTAA
CATGCCCTTGTGATGCATCGTATTATTCTTGTCTTGCTGACACGACAACGACAACACTTC
ATTGATGGACACCGTGGTCGTGCTCACCATGTTGTAAGTGACTATAACCGGCCGGGATTG
TGCCTTTCCCGTTATAAAAAAGAAGATTTTACTCATGCAAGGTTTAGACTAACCGGGATC
TGTAAATACAGGGTACCAATTTTAAGGATTTGAAGGTGAGGGTTTGTTTGTGTCAATCTT
TACAACCTCAGGGTTTATTTCAAACTTCATCTCGTCGGACTGGACTGCACACTGTGCCAT
GAAAGCTGGCCGCTGACAGACGTCAGATAAATGTGATCGGACGGCGGCTGACCCGGCTGA
TCCGCGCGAGGGATCAGCCGGATGACGCCTAGCACGGACAAAAAATAAAAAACAGCAAGC
TCAATCAGCCAACAAGTCTTCACGGCACCCCCATTCCCCCACACCTCCGATCTATCTCCT
TCCAAGCTTCCATGGAGGAGGAGCTAGGCACGAGCATCGAGGCTCTCATCCGACGGCTTA
GGCTCCACCAGCCGCCTCCCTCCCCTTATACCGGCGATCCTTCAACAGCGGCGACCCCAG
CCGCAGCTAACCTGTTTCAGCCTCGGAGAGCCGCCGTGCTGGTCTGCCTCTTCCAGGACG
CTGCCGGCGAGCTGCGTGTCCTCCTCACCAAGCGCGCTTCCTCCCTCTCCACCCACTCCG
GTGAGCAGCTCGCCCGCTTCTGCGTGACAGCTTCTGATCTATCCGAATCGTGGCGCCCCG
GTAAAAATATTTTGGGGGAAATTTGTCACTGTATGCGCTAGGTTGGGGACTTGGGACTGA
AGCATCCTACATTTCGCTTTCAGGTCTCGTTTTACGGCCCGTAGGTGACTGGATTGCTAT
TCCGCTTTTGCATTCTCTGAATTTTATCAAGGTGAATTCAAGCCAAGAATTGGGCTTCTG
GTTGGTAGTTGAAGCAGAATCTAGTACAAGGCGTTGGTGTTCAGCAGCATTTCAGAATTC
AGATGTTTGTACTGTTGATCCCATATGGGTTTTAATCTAGTAAACCAACGACTGTTGTTT
ATCATTAATCTTAATTCATTGGCTCCCGGTTCTTCTAGTTAGCTCTTACAAAAATTAGTC
CTCGCGGGTAGTTATGCTACCATAGTGTACAATTAGTTTAGACTACCATGATGTTGGTGT
CTTTTTTTTTTTGCGGGAAAAACTTCCGATCTATTCATCAAACATCATGGCAGTACAAAG
AACACCAGGAGTAACAGAAATTACATCCATGTTCGTAGACCACCTAGCGACCACTACAAG
CACCGGAGCAAGCTGAAGGCGCACCGTCATCATCGTCCCTCCCTCATAGGAGCCGGACAA
GCCTTATTGTAGTAGACAGCCGGGAAGTCGTTGTACTAAGACCCCAAAGGACCAGCGCAC
CAGAACAACAACCGTCGCCGATGAGGAGAAGCGTAGATCGAGAAGATCGAATGCAGACGA
ACAACAACCATCACCCGTGAAGAGGCGCGTAGATCGAAAGGATCGAACACATACGAACAA
AGACTGGATTCACCAAAGACAAACACCGACCAAATCCCGAGAGACCTGTCGGAGACACGC
CTCCACAAGCCCTCTGACAATGCAAGACACACTGCCGGGAGGGGGGCTAGGTGGGGATAA
CCTTATTCCATCTTCAGGGAGCCGCCACCGCATTGCATACCTGAATAGGATACAAACTCT
AACAAGACTCAAAAAGACGCCTAAAACGATATACATAGCAAATTGGAGAACTTGTTATGT
ACATGGGCCAAGCACACACATGCTGGTTCTGAGGTTTTGGTAAGCACAGAGCGAATTGGA
GAAATCCCTTGGTATATAAAATCTAATAGTCCCTTGGTAAATATGCATTCTACATCATTA
TAATTTAATAGTCCCCATTTGATACATTTTAGTGTATATGAGATTTTCTCCCAGAAAAGG
CTACAAGTTCCATAACGCACTACAAAAATCCTAAGATTCCTACAAATACCAAATATGCTT
ACAAGTGAATTTGGATTTTCAACTTAGCTTTCTGTTCAGCGCTTGTTTGGCTTGTCTTAG
CTTTTATATTTAAACAATCAGGTCCTCAAATGGATACCAACCTAGACACGAGCCGGATAA
ACCCTATCTGATTTTGTTTTCTCCATTTGAGATTTGCAGGGGAGGTTGCATTGCCCGGAG
GAAAGGCAGATGAGGGCGATGCTGATGATGCAGCAACAGCATTAAGGGAGGCAAAGGAGG
AGATTGGGCTTGATCCATCCTTGGTCACTGTCGTTTCCTCGCTTGAGCACTTCTTGTCCA
AGGTAAGATGTCTATGGGTTCTCGGCTTCTCGCTTATACCCTCACCGAAAAAAAATCACA
TTGTATAGCAGGACAGATTATTTAAGTGCATCATCGTAAAGACATGTAAGTTTTCTTTTC
CTTGCTTAGACTTCGAAATAAAACACATGCATGCAGCTCAGACTTAGGATTTGCTTATAG
ATGTTTTGAGGATCATGTAGCAGGCTGTTCTTTAGAGTCCTCTTTTTCTGGATAGAACGT
TATCTTTTTGCCCTTCTGATATCTCGGAATTAATATCATGAGCTCTCTTGGAAAGTTGCA
TAGCTAAAGTGAAATATTAATCTGAAGGAAAATTTGACTGTAATTTGAATTGAACCAAAA
GCGCACTGCAATTTACCTTGGGACTAGGCAGCTCGTTTAGATTGTGCATGCTATCTTTTG
CTTTTCAAGGTGGTGCACCTGATCATTTTGGCATTATTAAGGGTCTCGTTTAGGATTTGA
TTGAACTAAGGATTGAGTTACAATATATGCATTGTTTTCTGTGTTATGTAACACATGTGG
CCTTTGACCGCACTTGTCACGTGTCTCTGAAGATTACTTTTATTCTGTCATATCACTATA
TGATATTTATGTGAAATATGTAGAAGAAAATAATGCCAATTTATTGATGCATAATACAAA
GATATAATGCAGAAGGCAACCTCCTAGAACTGGAATGCATATCAGCTGCTGCAGAGGAAG
CCTGGTTTCATCACCAAAATCGTTGTAGTAAAATGGCTAAGAGGTCGGCCGTAAGCAAGG
AGCTCCCTTTATGTTGTTGCTTCAGCACTATCCAAGCCCAGTACAAATTATTGCGCCCTG
TCACCGTTTTGGTTTTATGAAGTGGTAGACTTCATCTAGTAAAGGTTGCTTTTACAGTGT
CGTTTTCATCCAGATTAACATTCCCATTTCTTTTGCAGCATCTTCTGGTAGTTGTTCCTG
TTGTTGGTATACTCTCAGATATACACGCATTCAAACCTATCCTTAATGTTGATGAGGTGG
ACGATATTTTTGATGTACCCCTAGAGATGTTCCTCAAGGTGAGTGCTATCAGTATATTTT
CACCATTCTAATTAATTGGTTATATACAATCTTTATTTGGGTTTTTATGCTATGCTATTC
ATGTAAGCCTGGGTTGCATGTTTGTGATATTTGCAATTTACCGCGAAAATGACCAGTCAA
CTGGAAAGAAGCGAAGCACATAAATTACCATGATGTGTAGTAACATTGTGCTACGATGAT
ATGTATACTGGAAAATACTTGGCCACAGTAGCTAACTATGATATGTCTTACACAGCAGTA
GTGGTGCAAGAAATTTCTTGTATTTTTACCTGAAATCTTAGAATGTACTCAAAGCCAGTT
TCCCTTTGTCAGGACGAGCGCAGGAGATCCGAGGAGCGAGAATGGATGGGGCAGGAGTTC
ACACTTCATCACTTTGATTACGAGAAAGACAACAAGACGTATGTAATCTGGGGTCTGACT
GCCGGCATCTTGATTCATGCGGCTTCAGTTGTATACCAGCGGCCACCAGACTTTGCTGAG
CGAAGAGTACAATTCAACCTTCCGAAGTGCTCAAAGGAGCCTTCTCCAATGCCATGATCA
GGATTAGGATGCACACTCAGTTACATGTCTGATTCAGCATACAGAAGACTACATACACCA
GAAGAAATGGTGGTATAGGATCTAAAAGGTTTCCAAATCATGTGCTGTTATATGATTTAT
TTATTATTCTTGGATGCGCCTATGGTACGCCGTCCCTGCAATTGATGTGAAGCGTTACGC
CCTGTGGTTCAGCTGCGCCATGATTATGCAGGGTGTGCCACATCAAGCAGAGGACGACGA
TGCATTCCATGGTGTGCAACTTGTTGCACACAGCGATTAAAATTCAAACGTTTGACAAAC
ATATTTGTCCTCTATTCATTGCATAATCGTACAGTATAAGAACATCATTCAGAAAATGTT
TGGTGCTTACCTGAGTACAATCCAATCACTTGTCCGCTGCTTCTGTGCTATGGTTGCCCC
TTTGTTGCACTTTATTATTTCCCCTGTCTTTTGCTCACACCAGTCTGAAAATGGTGAGGC
TAAGAGCAACTTTAGTAGGTTCACCAAATCGGCGGCCTCTAAAATGCGTTCACCAAATCG
GCAGCCTCTAAAATGCACTTTGAAAAGTTTTAGAGGTTGCTTAGTTCGTGTGCAAACTTA
GGCAGTGTTCGGCAACCCTCCACTCCTTAGCTGCTCCCCAAATTACAGCTGCATGCCGCT
CTGCTCCGGAATGGAGTTGCAGAGCAACATGCTCTTAGATTCCCTAAATGGCGGCCTCCA
CAATTAAGTCCATTAGAATTATTCCGGGTGTTAATGGGACTCGGTACATTAGAATTATTA
TCTGAAAATTAAGTCCAACTTCCATTTGGTTCATGATTCAGGGTTACAGCGTCGCAATAA
ATTACCAACCGAGTTTCTGCGCTGTTGTCATCCATCAGCTTAGATTCCATGCGATTTTGA
CTGCAAATACATGACTTCTGAGAGAAGGGCTCACTCAAATATGGGCAGTAAATATTTCCT
GGTGTAAATGACATCTCTGGCCGAGGCCAAAAAATTGTATAACTCTCAGCATCCGTTGTC
AAAATACAAACTGAATATACAGTACAAAGCAAAATACACACTATAAAGGCTTTATACAAC
TCCAATATGTATGATTCAGCACCAGTGTGCACTCTCTTCCGTGTTCAGTGTTCCAACCAG
CTACGTATTAAATATCCTCAGGGTTTATGTTCTCTTCTATGACCTCAATGCAAGATCCAA
CTGACCTCCCAGAAGACATTGCCTCTGCAAGCTTTGATCTAGCCTTTTCATGGCGGCGCA
GTATCAGAACGATGTTCAGCACAGCCCACCTCACCTGTGAATCAGCTTTGTTCTGGGTGA
AACCCAGGCTCTTGAACAGTCCATCCAGCTGTTAATGAAAGAAACACGAAAACAGAGCAG
ATAATTAGAGGATGCCTTGTTTCAAAAAATAAATAGAGGATGGGGTTACATGATGTTTGT
CAACTTAGCACGTAAGTAAACTGATGCTGAAAAACCTTGTTAACGTCGTCTAATCCTCCT
TCGGCGTATCCATACAGAAGATACTCAGTTGCTACTCCAGCCAGTGCAATACATGAGAAC
TTGTTCAGCATCTGCCATTAGATACAACTTATAGCCAGGTCAATCACAAATATGACCCCA
CAAAAAGAATCACAAATATGAACCAATCTCAGAAGGCAACAAATCGTGTAAGAGCAACTC
CAACGGGGCGACCCA