morexGenes - Barley RNA-seq Database

Contig contig_1559730

Source Contig contig_1559730

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1559730 (4304 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_1559730

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10761	1	1353 bp	None	Available	Available	LOC_Os12g25070.1, FRAME:-1, EVALUE:1e-12, 13112.m02541 protein retrotransposon protein, putative, unclassified
MLOC_10759	2	1668 bp	MLOC_10759.1	Available	Available	LOC_Os11g32720.1, FRAME:+2, EVALUE:4e-20, 13111.m03190 protein zinc knuckle domain containing protein, expressed
MLOC_10760	2	950 bp	MLOC_10760.1	Available	Available	None

CDS Structure of MLOC_10761

CDS Structure of MLOC_10759

CDS Structure of MLOC_10760

Contig Sequence (4304 bp)

>contig_1559730 4304 assembly3_WGSMorex_rbca.fasta
TTTTTTTTTTTTTTTTTGAAAACATGCCCCCCTCCCAACCAAAGGTCATCTTTTGGTTAC
AATTTTTGCTTCTTTTCTGTGGTATAAGAATGGTTTATTGGACGTCTTTGACCAGTTTCT
GTATGGTTTTCCCCACTCTTCTTGGTTTCCTCGGAAGGGAAAATTGCAATGTAGGCCGGA
AGGCGCAGTAGGGGATGATTTCTTGGAGTTTTCTGTTTTGGAGTGTGGAGACGATACATT
GACGATGTTGGGATTAGGGGTGGCAGAATGCTGGATGACATGGAGTTTTCTTTTTCGCTT
CTAGAGTCTTTGCAGTGTTCTTTATGGTTACCATAATTTCTAAAAAAAGGTTGTTTTTTC
TGAGCTCCTGCAATGTTTTTCTTCGATTTGGCAACAAGCCATCGCTTTCTGAGGAAACTG
GATGCTATTTTTGGTAACTGCTCAGCTACTGACGCACTAATTTGGAATGACTGCTCAGAT
CCAGCAAGTAAAAGCTTCATATTTGATTTTGGTAAATTCCTGTAAAAAATAATCATTCAT
GTGCTAACTATTTTGGAAATACGAATTTACAATGCATAATTTAGAAGAGATACATACACA
CTGGACATATGGGTCATTTTTTTTATGTAGATTAGTTCTAGGTTATAGTTTGAGAGTTAT
GTCTACTTCTTTTGAACTGAAAGCTATGTCAAACTTTAGCAAATGGTTTGTGTGTTTAGC
CATCCAGGTGTAGCCGTCTGCCATTCTCATATGAATAAGGTTTTCTATTATGCCTTTATA
ACTGGGTTTAGGAAGGGAGTGGCTAGGGTGCACCCACCCCTTTAGCTGGAATAGGTGACA
TTTTGTCGAGTTGATACAAGATGCAGCCATCATGTCATGTCAGGGTTTCACATCTAAATT
CGGCGAACTCATGAGAAATAAGACAGATCGTGAATAGTTGCTAAAATCAGAACATAATTT
AGCTTTTTTATTTCTCGCCATGTGAATCAAATGAAACGGTGGATGCGTTTTGTGTTTACA
CTGGACATAATCACAATCTTTTGTACTCCCTCTGTAAACTAATATAAAAGTTTGTAGATA
ACTAAAATAGTGATCTAAACGCTCTTATATTAGTTGCTCTTATATTAGTTTACGGAGGGA
GTATCTCATTGGACGTCCATCCAGCCCGCTGTAACCTAAAGGGCAAAGTGTGTATAGTCG
TTGCTCTTTGGGGCATCACAACAAAATGTTCTCATGAATTAGGCTCAAAATTTAGCAACA
ACGATGATGTGTAGTTATTTCAGCATGTCATTATACAATGTACGGATTCTGACTCTAGTT
GATAATGATATACATTTAGTCTAGGACTTCTGTGGGATCTCTGTTATTTTATGAAATCCA
GTGTGTAAGTTTGCTGCAATAAACTGTAGCATTGTATCTGAAAACCTTCCTGTTATTTAC
AGCATGGTGTGCAATTCCATAATTTGGGGTTTGCCTTTATGCACATAGCTGACCCTTGCT
TGTTTGGAGAAAACAGAAGCACAATTTAAAACTTGTTGCAAGAGAGTATGTGCAATGTTA
ATGATTCTCTATGGATCGATCTGTTCTTTATCTATCAGCCTTTCTTGAAGCTGCAGTCTA
ATTCATTCAGCCGAAGACCATTTAGTTAGTTAGAGATGCTCTCTTTTCATTTGCGTGCCA
TTTAGTTACATTCTCTTTCAGCTGACTTCTTAGATTTCTTACTTGCATTTTTTATTCTTT
CACTAATTTCTCCAGCTCCTACATGTAAACTTGACAAAGTATTTATTTGTTGAACCTAAA
TTTTTCAGAAGTGCAGTCATTCTTCTTATTGCATGGAATCTGATGTCAGTCCAGGTTCAC
AGCCTGCCTTTTTGAGTCATCATGAACCCCACAATCATATGACTAATGGTACAACTCAAG
TTAATGTTAGTCCCCAAGGTGCTGGTGCTACAACTCCAGTAAATATTACCCTCAAACGTG
ATGGCGCTAGAACTCCAGTTACTTTTAGTCCCCAAGGTGCTGGTGCTACAACTCCAGTAA
ATGTTACTCCCCAACGTGATGGCGCTAGAACTCCAGTTACTTTTAGTCCCCAAGGAGCTA
GATCTAGTGGTGAACTACCGACCTGCAAGTGTACTGCTGGGAAGTGCAAAATTCTGAAAG
AAAAAGGGGTGGACTACTATGTGTGTCATATACCAAAGGTAATACTTCTGTTTGATAGTT
CTAGTGTCTTCATTCCCCCTAATCAATTTTAGTACTACACTACTACTTGATATGACTATG
GTCAGTTTATACTGTCTTGGTCTGTTCTGTATAAGATGGTTTGGCTCTTGATAGATGTTG
TTTCTTTTATTGATTGTACTAGTCCTGCGAAAAGCAATCCAATAAGTCATGACAGAAGCT
GCACATACTTCTTTTCTTTTTGAGAATGAGAATTTATGCATGAATAAGTACTGTTTAACG
ATTTTTGTAGTTGATTGCTATCTTGATAAATTAAGTACACTAGAAATTACCATCAAAGAA
AGAACATTTGGGACCTCAGTTTGGTAGGTCCTAAAGTTAACGACCCAAAGCTTTCAGGGA
ACATACAATTACGGTAGAAGTTCTGACAGAAAAAAAAACATCTAGCCCTCATTTTGGCGT
GTCTTAATGATGATATGTGGTTAATGAACGGGAAACAAGGGCATAGGAGATAGGTATATT
TTGAAGATAGAAGAAATAGTTCGCCAGCAAGTAAATGCAGAAGGGTGCGCAGGTATATAA
GGATGAAGAAGAGGGGGAATTAGAGATGGGGTAAATAGATTCTTTTTTTTCTAGTTTGCT
TTGGGAAAGGATTGAAACCCCTCCTTTACATTGTACTCCCTCCGTCCTAAAATAAGTGAC
GCAGATTTAGTACTAAATTAGTATAAATTTTGTACTAGATCAGCGACACTTATTTTGGGA
CAGAGGGAGTAGTTTGTTATAATCAACAATACCAGACCTAGTATGTTACACACACAGCTC
TAATCTTCTAACAGATAGAACATTGGTATGCAACGACTATGACTCCTAACAAAACCAGAA
TTCTCGATTAGACCAACTCTTCTACTATTTCCCATCTCTCGTTCCTGTATGTGAGCAGTG
CTAGTGTCTTGTGTGCCTGGCATCTGCACCAGAACATGCATTAATCTATAGATTTCAGAA
AAAGAGTAAATGTGACTTCTTCTAAGAATTGTTGTCATGATCCCACCAGCTAATTCTTCA
TGTGGCCTTTTGGTTTGAACGCGTGTGCATTCCACCGCCTATTTCAACCGCTTCTGAGTA
CATTGTTGCCATGTTTTTTTCCCTGAGAAAACACGAAAGCCATGTGTCCTGTCGCATTGA
TAGAAGAAGAGTTTATGTGCAAGCCTTAGATGGGGCACACTGGAACAGACATCACATCTG
AACATTTCAATTGGTAGCAGATCCAACAAAGCAGCGGCACAGGCTGCAGACCAAGACCGA
GCCATTGAAGTTGCACACTTCGCGTTGCGTCCAGATTAGCCAGGTGTTATGTAAGCATTT
TTGTCAAACATTGAGGGGGACTGCATGTAATAATATAGATAGGAGAAAAGGGGCAGACAC
CCCATACAAAGTTCAGAAATGACCAAAACAAGCACCTCAAATCTGAAACGTAACACACAC
CCAGGTGGAAGGCATGACCCCTAAACTGCAGAGATGCACCCTGCTACCCCAGTGCACAGC
TAGATTTTCTCCAGCCAGAAACCTAAGTTCCCCTTCAACTGGCTGACAACCTGAACAATC
GGTCGAACCCTGTTATCGAACAGACGAGCATTCCATTCCCTCCAAATGGCCCAAACGGCC
AGAATGCAAAGGCAATCAAGCCTCTTCTTATCTTTTCCGTGATAAGCGCTCCTGGACGTG
AGCCACCAAGAGCAGATTTCACTGTCCAACAGAGGAATCGCCTGATGTTTAGCCCATTGC
AAGACTGTGTTCCATATTGTGTTGTGACGGCACAGCCGACGAATAGATGACCTCAGTCTT
CAGGCGCAAGTTGTGCACGAGCACAGGAGTTATTGTGGGGAAGCCCTCTCTTGGTCCGCA
TCCGACGTCCAAATTCGCCAGCAAGTCACAAGCCAGAAGGGCTACTTGCACTTGAGAGGA
ACCTTGAAATGCCAAATGGCCTCATCTGACCATCATCTACTGCCCCCCCCAGGAAATGAG
CTAGCTACACAGATTTGGTTGAGAAACAGCCCTGGTCTTTGTTAGAGTTATAATACAAGT
CATGTACCCTTTTGTATTTATCCCAATATATAAGGGGTTTTCCT