Contig Data
morexGenes
Links



Map Locations of contig_1559582 (4271 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1559582

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10675 3 537 bp MLOC_10675.3 Available Available LOC_Os01g34330.1, FRAME:+1, EVALUE:2e-29, 13101.m03455 protein BAH domain containing protein, expressed





CDS Structure of MLOC_10675






Contig Sequence (4271 bp)

>contig_1559582 4271 assembly3_WGSMorex_rbca.fasta
TCGTCGGTCTACCGCATGAGGAAATGCGAGACGGGAGCTCGTCGGTCTACCGCATGAGGA
AATGAACGCAGTGAGCAAAACATGACATGGGAGCTCGTCGGTCTACCGCATGGGCATCGA
CCAATAGTCCTCAAATGGGTCTGAAGAAAAGTGAAGCTGACAAGGTGATCAAGCAAAAAG
CACGCAGGTCGCATGAGGTTTTGTCCAGCAAGCTGGCACTGACTTCAGCTGCTGCTTGTT
TTGGCTGACCAGGAGGAGTGGCCCGTCCACCAGGTGATGTAAAATCAGCCTTCCTTAATG
GAGAATTGAAGGAGGAGGTCTACGTGAAGCAGCCGCCTGGTTTCATCGTCGCCGGAGAAG
AAGGGAAAGTCCTGCCGCTGCGTAAGGCACCATGAGCATGGAATGCAAAGCTGGACTGCA
CGCTCAAGGAAATTTGCTTCAAGGAGAGCGAGCATGAGCACGCGATCTACCGATGCATCA
CCGGGACGAAATGCTGCTCATTGGAGTTTATGTAGATGATTTGATCATGACTGGTTCATC
CAAGGGAGCTCTGGAGAGCTTTAAGCTTTAACGACGAGATGAAAGCAAAATTCTAGATGA
GTGACTTTACACTGTTTGTCATTCTATCTCGGAATCGAAGTCCAGCAAGATGGCGATGGC
ATCAGCCTATGTCAGGGATACTATGCCTCACACATAATTCAGCTTGGAGGAATGGAAGGC
TCCTAGCTCACACTCTGATGGAGGAGTGACTCAAACTGAGCCGTGAGAGCACGGCGGAAA
AGGTGGATGCCACAGAGTATTGGAGAATATTTGGCAGCCTCCGCTATCTTCTCCACACAC
GTCCGGACCTGGTGTTTGTCATCGCATCCGTGAGTCGTTTCATGGAGCAACCTACATAAG
AACACATGATGGTAGTGAAGCTCATCCTTCGCTATGTCGTTGGCACCAGCCACTACGGCC
TACGCCACACGCGGAAGACTGGAGAGACGGGGCTGATTGGCTATAGCGACAGTGACCTTG
CCGGTGATATTGACACCAGGAAGAGCACAAGTAGCACGGTGTTCTTCCTTGGTAGTAGTT
TGGTGAGCTGGAGTCTCTCAAGCAGCAAGTAGTGGCTCTGTCCTCCTGTAAAGTAGAGTA
TGTGCCTGCGACATCTGCCACAACACAAGGACTTTGACTGGCTCGGCTGCTTGGTTAACT
CCATGGTAGAGAAGCTGAGGCAGTTGGGCTATGGTGGACAGCAAGTCTGGCGCTGGCCAA
GAACCCAGTCTTCCATGAATGCAGCAAACATATTGACATACGGTACCATTTCATCAAGGA
TTGCTTGGAGGATGGGAGTGTAAACGCCAAAATGAAAAGCACTAGGGTGGGTGAAATTCC
ATGAGCTGCGTGCTAGGATTGGGATCGTCCAAATCAATTCAAGTCTGATTTGCAAGGGTT
AGGGGGAGAATTGTTAAGAGTAATCCTTGCTGCAGTCAGTCAATGAGTTGAGTCTTTTCC
TTAGGTTGTAAGCTAGTGAGTCATGTCCGTGTCTTAGGCTACAGGTCAGTGGGTCCAGTC
AAGATGTCTTATAGGATGTAAGAAAGCCACTGAGGTGGTTCTGTCATAGTTGTTTCAGCT
ATAAATAAGAGGTGAGGTCTAGCCAGCTGCATCCATCGCAGCCCAGAAACAAGAGCCCCA
AATCAGAGCTACCTGTGCTCTTGCTAGTTGCTACTTGCTACTATAACAATGCGAAGGAAG
TGTGGCAAGGCACACTTCATGGCAGGAGTCTTTGTTCTGCCTGTTCACCTTCCAAGATAT
AATGATCTTACATCAATGTTAGGCTTTTCTATAACTACCATTGTTTACTTGGGTGAGACT
AGAAATTTGTTCTCGAACTAAGTTTTTACTGCTAAACATAGTTTTTCAGGCTAAAAACCT
GATAGATTTGTAGTAGTTTGAAACTGTATGATGTAATTCTATGGCGCCTTTTATTGTTAC
TGTATTGTCATTATAGTTACAATACCGCCGTTCCATAATGACAATGTCATATGTACTAAC
AACAGTTTATGATGCGTCCTTAGCCATTTTAAGTCACGTGTTCTACACCTGTATATATTC
TTATTATTTCAGAACTTGACATATCATTGATTTTATGGATATACAGAAAAGCTCTGTACT
GTGCAAGCGACTAATGGACAAGGAGCTTGATCCTCCGGTTCTGTTAACAATGACCCCTGA
TGAACTAAAGGTCTAATCATCTTATTTTCATTCTGGTCTTCACAGTAACCATTTTCCATC
TCTTCACATTAGTGATTATAATTAGTTTTTGTGGTGCATTACTACTCTTATAATCTAGTC
GATATGACATGGTTGCTGGGACCAAAATGGTTCTGTTTAGTTGAAAGCATTTAACTATTA
AATTTGAACAGGGGCATGTACTGGACTGATTTGGTTCAAGCATGAGTGCATTAGTAAATA
TCAGAAGTCCTTCAATATTTCGGAAGTTAGTCTGAAATTTATTCGAGCAATGTTTAGAAA
AACTGAAGAGCTTCAGACATTAATATTTGTGGGAATTTATTTCTTTGTTCCCCCTTACTA
ATTGTGGTTTCAACCTCAAATTGTGAAGGGTACTAGTCAGTTGCACTTGCACAATTGTCC
AGAATTGCACCTAGTGAGTGTTTCAGACTAGATATGTCCCATCTTTTCTGAAACCACCTG
TTGAGCCAGGAGACCACTTCGATAAATGTTGGCTGTTATTATAATTTTCTCTTGATTCGG
TTTGATTACTCCCTTTTGAGTGTGTATTTCTCTAAATTCTAAGGTACTCGCTTCCTGTTC
ATTTCAGGCTGGGTTGACACCAGCAGAGATAGCGTCTGAATCAGAAGAATCAAGGCAGTT
GCAGGTATTATACATCATATGCATTGAGTTCACAATCTGCCAGGGCCAGATAATGAAAAA
TATCCAGTGCAGTAACTGAATTTTCAGGCAAAGTTTAATTTGTGTTTCTATTTGTTTTAA
CTAGATGACTGAGGCCCGGTGTAGAAGATGCACAGAAAAGAAAGTAGGCATACTTGATAT
TATTCATGCCAGCCGTGGAGATCGCTATCAGGTATTTCCGTGTTCTTTTTCCGCTTCTTT
TTCCGCGTTTATGAAGCGCTTACTCTATTTCTGTTCTTGGTTGTATGCTGTGGTGCTTTC
CACATTACTTGTGCCATCTTGTAGTTTCTGTTGAAGTGTATATGTGGATTGCCTAGCCCT
TTCCATTAGTACGGATCATTGGTTGCGTTGGCTAGTGCATGAAGCTTACCATGGTATAAG
AGTCTAGGGTCCTGAGTTAAGTCCTGGCTTTCGCAGTTTATCTAAAAAATTGCTGCTGCC
CCCCTTTGTTCACGTATAGGCCTCTTGAGCCATACCTCTGAGTCTATCCACGTGTTGGCT
TTCCGCGTCACACGTGAGAGGGGGTGTTGAAGTGTATATGTGGATTGCCTAGCCCTTTTC
ATCAGTTTGGACTTTTGGTTGTGTTGGCTAGTGAATGAAGCTTATGAAGCTTATCAGTTT
CAATTTAAATCAAATATTTGATTTTAGGGATGATCAATGTTCTTGTTGTAAGGTGGGTTC
AAAGGGTTTTAAAATCATAACTATGCTGTTACGCATCGTAAAAGAATCCCCAAGATCCAT
ACATGTGTAACATATTTTCATTGAATAGACAAATTGATGCGCAACTCGTGCCACAACCAT
CGCAGTTGAGGCTTGAGGTATGATTCCTAGCTATCAAAAGTTTATGCGCTCCTTTTTTTT
GAACATGTTATGTCCTCCTTTTGAATGCTTGCTTGATTGGTCCAACTCTGTGTTGGGTTC
TACCGTAGGTGCATCGCAAAAAAAAGGGCAGCCCGGTGCATGTAGCTCCCGCTTGCGCAG
GGACCGGGGAAGGGTATGACCACTTTGGATCTATTGTACGTAGCCTTTCCCTACATTTCT
GCAAGAGGCTGTTGTTTTCAGGACTTGAACCCGTGACCTCATGATCACATAGCAATTTGC
CTACGCGCAGTACAACCAAGAACATGCTACGGAGATGGATCACATATCATTATCACTAAA
CGCGCAGTGCCGTGCAGCGGAAGTAGAGTTGGGGCAGCGCGTTCGCGTGGTCCGTCTCCT
CCTCGTTCGATCTCCCTCGAAGAGCCGATTGCCGGACACTCTCCCTCGAACAGCCGATCG
CCGGATCACACGTACATGTTTGCCGGAGCGACGCAAGTGCACCGTCTCTAACGGTATCCG
CGCGTGCAGGA