Map Locations of contig_1559562 (6486 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1559562

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10665 2 2427 bp AK357921 Available Available None





CDS Structure of MLOC_10665






Contig Sequence (6486 bp)

>contig_1559562 6486 assembly3_WGSMorex_rbca.fasta
CCGCCCGTTTTTGGCGGTTGGCCACATCCTTTTTTTTAGAATATTCCCAGCATCTGGTTG
ACTNNNNNCCTCCTCGCCCCAGATCCAAACGCATGGCAACCATAGAAAAAAGTGGTTATC
CCTGTCCCTGGAAGGATATGCCTCCAACCAAACACACCCTAAAAGCCTGAGCTTGGATTT
TTAGGCATGGTAAATCAAACGTTTTTATATCTATTTATATTGGCAATGATGATAACTTTA
GTTTGCGTAACCTTCATAAAAAGATGGTATTGGGACAGACTTGCTTTGCTCGTCAACTAA
ATTTATCATCCTAAAAAAACATACTCCCTCCGTTTCTAAATATAAGTCTTTTAAGATATT
TCACGAGTAGTCCACATACGGAGCAAAATGAATGAATNNNNNNNNNNNNNNNNNNNNNNN
NNNNTCCGTATATAGTCCACTAATGAAACATTTTTAAAGACTTATATTTAAAAACGGAGG
GAGTAATTTACCATGATATTTTTTTGATTCGCGATGAAAAAGAAAGAAGATCCACAGTAC
CTTGAAGGCCCGTAGGGTCACCAAGGCAGGGCGGACCAGCTGTGACGCCAATAACATCGT
TGGTGGCTGGATCTAGCGAGCTTGGGTCCAGCAGGAAGGTGGGAACATGATCTTGAATAC
TGTACACAAATATCGTACTATATTGAATATCTTTTGATCCACCGTATCTCGATTTCGGCA
AGAGAGAACATGGTGTACAGTGCTTCCGGGCTACCGTGCATGTGCAAGCTAAAACCGCGT
GTCACTTTCAAACGAATACTCCTACTAGTTTATCCGTTCTCGTGTGCCATGCACTTGCTT
CTGCCACAGTTTCAACTGCCTGTTTGACAACCAATTGTTATTGCTTGCAATCCATTCCTT
CTGTGAGATAGTACTCCATATAAACGGGAGTACTCGGCAACTCGCAGTCGCTAGGCTCCT
TCCGTTCAGTCTACCACACAATTTAACACGGGAGGAGTGAGTCAGTGAGTCAGTGAGCCA
TGGAGGCCACGACGAAGAACCAAGAGACGGGCGCCGGCGACAATAGCGCGCGGCCCGCGC
CGCCGGCGCTGCCGTGGTCGGTGAGGCTCCAGCTGTTCGCGCTCGTCACCACCAACGACA
TCGCGCAGCGCCGCGACGGGACCGTAAACCGCTTCCTCTTCTCCTTCGGCGACCGGCAGT
CGCCCGCGAGGCCTCGCCCGGACGCGCACGGCGTACGCTCCGCCGACGTCACCGTCGACG
CCTCCCGAAGCCTCTGGGCGCGCGTCTACTCCCCTGCGGCGGCGGCGGCCGGGCAGACCC
CGCTCCCCGTCCTCGTCTACTTCCACGGCGGCGGCTTCACGCTGCTCTCCGCTGCCTCCA
CGCCCATCGACGGCATGTGCCGCCGCTTCTGCCGCGAGCTGGGCGCCGTGGTCGTCTCCG
TCACTACCGCCTCGCGCCCGAGCACCGCTACCCGGCCGCCTACGACGACTGCGTGGACGT
GCTCCGCTACCTCGGCGACCCCGGCCTCCCGGCGGACGTCTCCGTCCCGGTCGACCTCTC
CCGCTGCTTCCTCGGCGGGGATAGCGCGGGGGGCAACATCGTCCACCACGTCGCCCAGCG
GTGGACTGGCGCGCCTCCCCGTAACAGCCCCGTCCGCCTCGCCGGCATCATTCTCCTGCA
GCCGTACTTCGGCGGCGAGGAGCGCACGGAGGCGGAGCAGAGGCTGGAGGGCGTGGCGCC
GGTGGTGAACATGCGGCGCTCCGACTGGGCGTGGAGGGCGTTCCTGCCGGAGGGCGCGGA
CCGGAACCACCCGGCGGCGCACGTGACGGGCGAGGCGGGACCGGAGCCCGAGCTGGCGGA
GTCGTTCCCGCCGGCGATGGTGGCGGTCGGCGGGCTGGACCCGCTGCAGGACTGGCAGCG
GCGGTACGGCGCCATGCTGCGGCGGAAGGGGAAGGCGGTCAATGTGCTGGAGTTCCCGGA
CGCCATCCACGCCTTCTACTGCTTCCCGGAGCTCCCCGACTCCGGCAGGCTCGTGGAGGA
GATGAGGGCGTTCATCGGGACCAACGCGCCCACTCATCACCCCGATGCTTGAGAAGATCT
GCGTGATGCGCGCGAGGGGTGTAATTTGAACTTAACTTCTGTGTGGAATCGGTGCGCTGC
TACAGCGATCAATTGCGTTTTGGATGATTGGGTTGGAAGTTTTGGATCTGAAGTTGATTG
AGACGAGCTGCCGTGTGAACTGTGAGGTGTGCGTGCGCGTGCGTAGGCGCCGCATGGAGC
CGTCGACCGTCGTCGCTCTGGGCTGGCGCACGAGGTCGTCGGTGCACGTCAGCACCTGGA
ACGTGTGGAGAACAAGGCACCCGTATTCTGCCGGTATTGAGCGCAGACCACACGAACGTC
CGGTGCACTCTCTCTCTCTCAACCGGAGATTTTTATTTTTAAGAAACGGCGTTCATAGGC
AGCGCGACGACACCCGAACTGTGCAAATCAATTTTTTTTTAGTTTCACCTAGCCTGGATG
GAAAATGCTCGAAAACGAGAGGCAGCGAAGGTGTGGCGATGCTCCAAGTTCAAAAAAAAT
ATCTTAAATGTTTCTAAAAATCCTGAAAAAAATGTGAATGTTTGTAAGGAATGTGACTAC
AAACTCCTAGAAATTTCAAGTCCAAACTCGAAATGTATATTGAGAGTATACTATTCACAT
TTAGATTTTACTTTTTTGTTTCTTAATGTGCGTTTCGAGTTTGGACCTGAAATTTATAGG
GGTTGTAGTTGCCTTTCTTGCGGACATTCACAACTTTTCCAGGTTTTTTAAAAATATTTA
TGGATGTCCTTTGAACTTGGAGCACCGGGAGTACTTCAAGGATAGGAGTACCTGATACGT
TTTTGGTGTGGCCTCGGGCCTGATGTAGCCTCCTCCACGCCATTCTAGATGAGATCTGAT
GGTTGGTTGTGTGGTCGGTGGTTGAAGAGTCCCCAACAGGGTAATCTCTCGGGGCATGTT
TGGTAGGCATACTTGTTGGGTTGCCCTGTGGAGCCTGGGTAAACAAGACCTGATTGAGGT
AAAACAGAAAAAAAAATTAACATCTGCACATGGTTTGGTTTCATGCATACACTGTAAGCT
GCATGAGGTGTCGTTTAAGGCATGCTGTTTGGTTGCCTGCTTGTGTACACGCAAACACAT
AACCTGCTGTTTTGGTGACATGCATCGCATGTTGTTCGTAACCTCTTCAGCGCGGTGGTG
AGATTACCACCACACAGTGGCCTCAGAAAGAACACACATAAGTGAACATAATAGCAATAT
TGTGCGAGAATTAAAACACATTAGTTTAAAGGCAAACCAGTGTGAGATTAAACTAAAAGA
AGTTGCAGCATGTTAGGGTTGTCTTAGGGGTCCACGGCAAAGGCTTCGTGGTGCTTCCCG
CATATGGTCACCACTTCCATGCCACCGTCATTGAACACGATGACCTTGAGCATGTCGGGA
CTCAACAACTTGAAGATCACCATGCAACCTATCTTGATCCGATGGACGACAACGAAGGTG
GCCCATCCCTTATCGAGGGTGACCCTGCCGTTCAACAACCGGACAATCACCCTCCAGGAG
TACCTTGTGTTCGTCTTTAGCTTGAACTCATGTGGCACGAACGAGAAGTGCTTCGTGAAG
TCCAGCGGCATAGCTATGGACTCCAGTTGCGCAGGGCCATGATTTCTGCCCAGCGACCAG
ACTTTCTGCTTCTAGGCCAAAAACAGAGTGAAATTCATTGGTTATGCTCATAACCTGTAA
AATTATAGGTTCATTGGTGCAGCGACCGCCCTCTCGGAAGGAACAACTTCATCATCATTT
GATTCCGAAGAGGTAGAAGGATGACCATTATCGTCATCATCTAGCGCCTCCGGCAATCCC
TCCACGTGTTCGCTTATGTCAACGATCGCAGACCAATATCCTGTGGCATACACTTTTTGG
ACGCATGTTGGTTCCGATTGGACAGCGCTGGGGCTACAGTGATAGTCAACCGGGCCTCAC
CGCCCCCGCTAGTGCACTCGACGACATGAGTGAAAGAAATGAACTCCACATACAGCATGG
GCTGTCGAAACATGGATTTATTGAGATTGCTTGTAAACCCTATGTACGACGCCCACAATT
TTTCACCAGCAACCCGCCGCAGACCCCAATAGGCAACTGTCCCATGATTTCCTCCGTCAA
CCACGAAAGCCTCATTGGTCATTTTTTCCGTCCATCACTGAACCAAACACCGGTTGGATG
CACCTTCTAACAGACACATACCCTACATTGACCATGTTTCTCATTATAATCGTAATCATC
CCACACCTAGACACATCCACACCGAAAGGATACTCGCGTACGATGTCCCCATAGAACAAT
AACAAGTTTTCCATAGTACCTATCGAGGAGCCGTATTTGTATGGTTAGTTGATTAAGAAC
TTAAAAATAAAATAAAATGAGCATATCCTTTATTTTTATTTTAAAATATCCAATATTCAC
AAACAACGGTAACATCATTCACAACAGTACATGTACCCAAAAAATATTCGGAAAATTACA
CGACGTCATTTATACCTCTGATTCCATAAGGATATCCTTACGAATAAATAATATCCGTCA
GCATGAACATATCACTAGTAATATATCAACGGAGTTGACCTATTATCACATGAACAAATA
TATTACACGCACATTTTTTTCTACTGCCAAAAGTTTCAAAATATTAGTTGCATGTATGTG
GTCATCACCTCAAAAGGGACATGGAAGGCAGGAAAACTATATATTGAATCCGTTCATCTC
CTCCTTGTGTGCTACTCAGCCAATATTTTCTTCACCTAACTACATACATCATAAAAAATA
TTCGTACTTATGTGGCATGTACGATATTTTTCTACTTCACAAATTTAGCTAATAAAGTAG
ACCTATGATTTCCTAACTTATTAATAAACATGACACATGAAACAACAACACATTTACTCA
TGCAATGACCAATTGATGTACAATCTTTTTATTAATAAGCAATTTAAGAACTTCTTGCAT
GTCTAACTAAAATGATGCATCTTAAAGGCATAAAACGCTGATCTACAAATGCAAACTCTA
AATGAACTTTAACGTTTAATAGAAGTAATAATTATGACTTAATGACATATAATTTCATCT
TGCATGTAAAAAATAATAGTAATAATGGACACAACTAATAATGATCTACGACATCTTTAA
CATATGATTCTATAAAATATTGCTATAAATGTAAAATATCTCATATGAAAACGTTTATAA
CTTCTAAGCAATAAACATCGCATAGCTCACGACGGGTTACAAAACTAGCTTCTAAGCTGT
TGATCTATCTTTTGTTCAACTACAACATATTTGAAATCCAACTCTAAAGCATCATAAATC
ATGGCTGAAAGAGAAGAGAGGAGAGCTATGTCTTTGTGTGTGTTCTTCAGACAGAAGAGA
AGAGAGCCAACAGAGGAGGAGGCACAGCCCGGAGCAGCAGAAGTAGCTCGTATATAAGGA
GCAAGAGCACTGTATTGTAGGCAGAAGACGTTACAAACAAACTACAGTATAATTAAGGTT
GTCTGGCTGAGGCACACCAACATCCCAGCCTAGTTTCATGCATCGTCCCTGCCTCAGCCT
CGCTTCCAACGCCGTCCCACGTCGCAATCGGCGCATGACGAAACAGTGCAGGCCACCTCG
GCTGGTGTCGATGCGGCCCGCAGCTCCTCTCCATATTCCGTCACACGAAAGAGATGCAAT
GGATTTCGAGCCGGCCGATTGGAACGGTGGCGGCAGGCCCAGCCGCCTTGCCTGATGACG
GCAGGTGCCACGCATCACCAGCCGCACTTGCCACCAGAATGGTACGGGGTCTTTTCTCGC
AATACGACCCATAGGTAGTCCTTTGTGGCAAATCGACTTGGCTAGTGGTTTTTTTGACAA
AAAATCATATCGGAACATGTCCGTGACAAACCCATTTGCCTATAAAAAATATGGCTATGT
GACTCGGACCTTGGCATGGCCTCGCACAAATGAAGTGCAAATGTGCGATGGGTTGATCAC
CTAGCACAAAGGCAGATATAATAGATTGTGGTTAAAGTAACGCACCTCTGTAGAGTGTAT
TGAATTGTGGCTTGTCACTCCTCGAACTGGACAAGATCTACGACGCGGCGATAAAGAAGT
CATGTGAGGTTGTAACAACCCATGAAATCTATTGGTCACATATTTTAACTAATACTAGAC
TTCTGCAAGATACTTTTCAAAATCATTGCTGAGATGTATCTGAAATCATTAGTAACATTC
GTGTATATTCATCTCACAATTTTGATGGACTTGCTGAGTACCTCGTGTACTCATCCATTT
GGATTCGTACCCTCTAGACTCGGTATTTGGAGGAGGTGTGGGATGGCCACATCAATGGAT
GTTACTTGTTTAAGGAGATGGACCTACCAAGTTTTTTTTCTAGAAAAGGAGGATGACCCC
CGGCCT