morexGenes - Barley RNA-seq Database

Contig contig_1559558
Source Contig contig_1559558
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1559558 (7522 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1559558

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10663	3	4575 bp	MLOC_10663.1	Available	Available	LOC_Os07g41750.1, FRAME:-2, EVALUE:6e-130, 13107.m04356 protein 40S ribosomal protein S3-1, putative, expressed
CDS Structure of MLOC_10663

Contig Sequence (7522 bp)

>contig_1559558 7522 assembly3_WGSMorex_rbca.fasta
TGGCTTCATGAGCTAGTAGTGTATCCCAACATGATGAAGGTGATCTTGATATAAAAGAAA
AAGGATACATCTATATATAGAGTTACAAAAGACACGAAGTTCTCTTCGAGAAGGCACTAG
AAACCGACATTAGTTTCCATATGGAAGCTGCCATCTATTCCTTAAGCATGGATTAATAGG
ATTAGTTAAATCTTAACAAATCCACAGGGAGAACACTAGGAGGTGCCGGTATTGCTTCAC
TGAATACCTTTCTTTTGCTAGAAAAGGCAATTTCTGCTTATTGCATCATTACATTTAGAC
CATCAAAGCGCTTAACACTCAACGATCATCCTTGTAACATGATCAGTAAGAATGGTATGT
GCAATATTTTCAGCAAAATATATGTTCACTCGTAGTCTTAACAATTCTCCAGATGCAACA
GAGTTGATGGGAATTTCTTGCACCCCCTAAAAACTCTTCATGATTTCCTATTACGTTTGA
GTTTGGGTATTCCAATGTCCCAGCCAGCGTATGCATACGAGAGCTTGGTGTATACTACTC
ATCAGATGTTTGTCAATCTTGAGTCGACTTGCATTTACTAACTCCAAGGTTTTCTACTCG
ATTTCATTTATTGCTTACTAGAAACTTGCTCCAAATGAGAGGCCGTACTACCACTCTTTT
TAGGGACAGAAAGTTGAGTGGTTCCTCCGGTCTTTGGCGCATTTCTAACTGGATTTAAGG
ATATTGTAACATCTTTAAGATCAGTAAATGAATCTGTTAATTTATTTACAGATGTTGCAA
ATTAATGATTTTCCAAACTTGAAGCCCAGTCTCATGGATACGTGGATTAAAGGACAAAAT
GCATTTCAATTAATTTCCAAACATAGATTAAAGGGACGAAATGGTGTGAACATTCCAATC
AATTTCTGTATCTCCCCCTAATGTCAAGAAAAGCTCCTCATAAATATGCAATCATGACGG
GTTGTGAACAGATCCATAGTAAGGTGTTTAATATAGTTGATAATCGATGGCGATTTATAC
CCCTAATGAATCCCCAGTTTTCTATGTGGATCCATAGATGTCCGCTATGGTGGTAAGACC
GGGGTGTATGCAACACATCCAAACTTACACAAACAAGAAATAATAGGAGGATTCACGCGT
AGCAATTACAAAGAAAATACTATGATATGCAGTTGGCTTTCATTGTATCAAGTTGCTACA
AAGAAAATACTATGATATGCAGTTGGCTTCCATTGTATCAAGTCAGCAACATGTAAAATA
GCATGACCCCAAATAGGAGTTGGCAAATTGCAATTCATCAACAAAGACCATGCAATGAAT
TTGATGTTCTTAATTAAGACAAACCATTTTGTATATGAGCATATGGTACAGGATGTTAAA
CTTCAATTCCTAAAGCCATTCAATAATCAATGAAAGCACACCAGGAGAATTCTCGAATTG
ACTTAATTCATCTTTCTCAATAATGGGCTTTCAACTAAATGACTTTCTTGTAAATAAAAG
ACACAACAGCTGTTGCAATAATCTTGGGAGATGCAAGGTTCCATGTAAATAAAAGACACA
ACAGCTCGTTTGGCCGATTACACAAAACATGTTTTGCTCGACATGGATTTGTCAATCTGA
ACAACAAACAGATAGATGTGCTGTTGCAACTTGCAAGTAAAAGAAAACCGCAACCGAGAC
ACTCATGTATGATCGTCCTGGTCTCAGCAACAGCTCGCTGATCTGGCATGGGCACGCCAA
CAAGGCCTGGTTCGTCGGTCGGCTCCAGCATGGGCTCAACCTCATCACCATCGCACATTT
CCGTCAGCATCCAGCATCCTCACCGCCATCGGCAGCATCCGCCTTCTCCACGATCTGACC
GACGGTGAGGAGGTGACCTTGGCAAGCAGCGGCGTAGGGGTGACCTTGGCACTCTGGCTA
GGAGGAGAGGAGAGGGACCACGATGTAGGAGAGGGATTGGGATGGAGGTGTGGGGAAGAT
GCGTCAAATCCACAGGAAGTGTGGGGAAAGATTTCGGCCTAGCTATGGTAACCTTTCGCT
GGAATTGTGGAATGAATTCCTATGCCCAAATCTGTGACAGCCAAACGCGTTGAGTTCGGA
ATTCAAAAATGAAATCCATGAATTCCAGACCAAATGATATGCCAAACGAGCTGTAAAATG
TATAAGGTGATCAGATAGGAGCGAAAGACTATTCTTGTTCAAGTAAACATTATTACTTAA
TCATATGAACTATGCACTTGGGTTCATCATAACCTTGTGAAAAACCAATATTAGAAAGCA
AGAACGAGAATGACAGAAATATGTAAGAAAAATCATAGAAACATTGTGCCATATGAAGAA
AATTCAGACACATGCTTAGAAAGAAGCAATATCTTAGAAAGAAGCAATATTGTTGGGCGC
ATAGCTTAGAAAGAAGCAAAATCTTAGAAAGAAGCACTATCGTTGGCCGCTAGAGAAGAT
TAGATCATTCCACATGAAGCAAATTCAGACATGCATGGTCTATAATTTAGTCTCTAATCC
CCACTAACGTACACAAACTACTTAAACCCAAACACATCAGCAGAGGGAAAACATTTTGAT
GCAGAAGAGGACACAGAATATGGGAGATGATACAACAGAATGGTCGACCAAAAGAAGATG
CCAGTTACCATGAACGAGACCAAATATCAATTGTCACCGTCCTCAACAAGATGGAAAATC
AAGGACGAACAAAAAAAGGATGACAAACAAGCACACAAATTGCAACATGCTCAAGACACA
AAATCCTGCAGTTTCTAGTGAAAGCAAGCACTATTTCTACGCTGGACAAGAATCAACAAT
GACCAGAACTTGAGATGGTAGAACTACTGCCCAATGCTACAGGACTGCAGAATCATACAA
AAAAAAGGAACAAATGGTAAAGAGCTGTTGGAAGGTTGGTAAGCATAGGAACAAATGGTA
AATAGCTGTAGGAAGGTTGGTAAGCATAGGAACAAATGGTAAATAGCTGTAGGAAGGTTG
GTAAGCGGGTTGCCCAATGATATTGGCAGGCCGACCAGATTTCCTTCCTTAGTGGTTTGA
CTACAGCCGATTCTGGCAGGCAAGACGATGGTACAAAGAACCAAAGCCATGGTACAATGC
AGCCCTAATGCTGCTTCAATAGATGAGCAAATGGTTTTTAAGTGCACTGTTGAGACGTCA
GACAATGCTTTCTAGGCAAATGCATCTCCGTCAGGACGCAACAATGTTTGCTGCTCGGAG
CCCAGTGCAGATCTTCATCCATACCACAACATTTGATTCCGAATCCCTTTAAACAACTGA
ATTTTGAAGTGTCTCAAAAAATAACATATTAAAGAATGCAACAAAATTCAAGTGGACATT
CGAAAGCTGTTCGATTTGGCTTCAGAATTGCAGAAAGACAGCATGGACACATACATAGTG
ACCGATCAGTCCCGAAAGATGGTATGATTAATAGGTTTTTCATCACCAGCCAAGCTAAAT
CAATTAAATGGTTTCACCAGCAGTAGCAAAAAGAACTCAGGATTTAGGAAATGTCAAAAA
AAAAAAAATTAAATAGTGGAAGACAAGGAAACAGTACTCAACAATCAAAGAGGGCATGAC
AGAAAACAAAGACAGACACTAATCAAGTTGATCTCAGAATTGCAGAATGACAGCATGGAC
GCATAGCGACCAATCAGTCCCGAAAGATGGTATGATTAATAGGTTTTTCATCACTGGCCA
AACTTGAACAAATGTCAAGAACAGAAAATACAGACAAGCATACAACTACCAACTACAAGA
TATAACAAATGCACATACAAAAGGTTAAAATAGAAAACAAGGTAAAATGAGAAAAATGAT
TTGAGCAAACCATGTAAGATTTGCCTACAAAACTTTCCAATTAGCCACACAGGCCCACAC
ATAGTGGTGCGAATCATGCTAGTCCTACAAGAAGACCTCAAAGCATAAATTTCATCAAAA
GGAGGAGTGCATATAGCAAAGGCATAGAAATAACAATTAGATGCATATGAAATGACAGGA
AAATGATTGTTGGCGAAAGAGACTATCAAGCTCAACCCAACTGCCCACTTTCCTCAAATT
AATATTGCAGGAAATACTTTCAGTAATGAATGCAGAGCAAAAGCATTTAACCAATACACA
CCTATCCTGCAGAGGCAGCATACCGAAGGCATAAAATTAACAATGAGATACATTTGAAGG
AATATAATGAGTGGAAAATGATTGTTGGCAAAAGAGATTATCAAGCTCAACCCAACTGCC
CACTTTCCACAAATTAATATAGCAGGAAACACTTTCAGTAAGAAATGCACATCAAAAGGC
ATTTAACCGATACACACTTATCCTGCAAATGCAACAAGGAGAGAAATAGCAAAACAAATT
CTTATGCAAAGAAGATAGATTCAGAAGCAGTCACCTCACATAGGAAGGACAATGAGAGGA
AAATGATTGTTGGTGACAGAGATTATCAAGCTCAACCCAACTGCCCACTTTCCACAAATT
AATATAGCAGGAATTACTTTCAGTAACAAATGCATAGCAAAAGCATTTAACTGATACACA
CTTATCCTGCAAAGACTAAAAGGGAGGAAAAGGTAAAGGAAACAAAATCGATATGGAAGC
GACAACAATCACGCAAAAAGCAGAGATGACAGATTAGAAGGGAGGGAAGTGATTGTCGTG
GAAAGCAATTAAAAGCTTAGGACACTGAAGTGTATAATCCGATGCAAACTATACTGTACA
ATGTGCATAAAACTTTGCATCATAGAACCTACGAATTACTAATCATAGTTTTTTTCACTT
GCATATAACATAAAAGAACAGAAGGTAACACAAATATAAAAAGCAAGTTGTAGCTCTTAG
GTTTAATTATCACTGTATATCAGATAACACATTCTAACAATACCATAGCAACATGAAATT
TGGAAATATATATTGGTTACTGTCGTTTGAACTTCAAAAGATGAAGCCAATAAATAAAAA
GCATAACTACATAATCCAGAACCATAGCATCAGTCAACCTAAACTCTTAAATACCCCTAG
GCAGATGTTAATTTTTCACTTTTAAGCAACTGCAATTTCTGCTGCAAGAGGCCTCAGGAA
CTCATCATCATCCTTAGGTGGGTGGATGGTTACAAGGTCAGGTAAAGGCGTAGCTGGTCC
TTGTTTTCCCTTAGGATCCCAGTCAAGCATGATCTTAACCTTGATGCCCAGCACACCCTG
AAAACAAGTAAGAAATATAAGATCTGCTAAGTTACATACACTAAGAACACCATTTATCCA
TAGCAACTAATTCCATGTGAAGTAGCTCCAAACCTGTCTCAGAAGAACATGCCTCACAGC
TCCATCAATATACTGGTTGACAGGATGGCCAGAAGAGATCATATAGCCATCCTTGAACTT
CATGGACTTCGCACGCTGTGCCCTAAGCTTCCCACTCACAATAACCTACAAATGAAGAAC
GCTCTATAAGTACACAAGCGCAAATTGCCTCAAACCAAAACAAGAAAAATTATTGTCAAC
AGAACAGGTACCTCACAGCCCTTCGCACCACTCTCCATTACAAATCGGAGTACACCATAG
CATGCTCTGCAAGTACATCAAGTAAATTATACAAAGAGCACCAAACTAAAAACTGTAATC
CAATTCAGTTAGCAATTTTAACTGCCTACACTAACATAAGAAAAGATTTGGGAAAGCAAT
AAGGTAATGAGGACAACCAGTTTGGAACGCATTAGAAGCCTATAGACAAAGCTTCCCAGC
AAATGAAGCCTGGTTGGCACAGATAATTTAGTCATCTTCCGACACAAAGTTGGCATAGAG
ACCTATTTGCTTTATAGATGACATATAACAAACGATGGTACAAGAAACCTATCAAAAACA
AGATTCATTGGTCTTGTTCACTCCAAACAAGAAACTAGTAGCAACATGCATCTACTGATT
ACGAAACTAGTAGCAACATGCATCTACTGATTACGAAACTAGTAGCAACATGCATCTACT
CAGTAGAGGGCAACAAGAGGGAGTATCACTAAGTAGAAGGAGAGCCCGAAATAACAGTTG
ATAAGACTCATAGAGCAATACGATAATTCAGTTAAGCAAGTTATATCCTGACGTAAGAAA
GGACTTGTGAAAGCAAATTGTAATGTGGTCAACCAGATAGGAAAGCATTAGAAACCTATA
AGCAAAGATTCTCAGCAAATGAAAGCTGGTTGGCACAGGTAATTTAGTCATCTTCCGACA
CAAAGTTGGCATAAAATGACCTATTTGCTTTATAGATGACATGACAGTACAGCAAACGAT
GCTACAAGAACCATAATATGATAATAATAACCTAAAAAGGATTCATTGATTATGTTCACT
CCAAAGCAGAAAGCAACGAAAACATTAGAAAAATGCTCTACTGCTTACAGAAAGCAATGG
AGGGCAACAATTGATTTCTGTCACCATCGAACACAAGTCCAGCGTAGTTGAGCCAGGCAT
GTTGTGAAGATGACATGGTAGTACGCTATGCATATATGTAATGAACACAAGCTTCAGAGC
GTTCGGGTTCAGGAATAACCTTCGGACGGCAAGGCCACCGAGCAGCTTGTACCGGAGGGA
CTCGGCCTGAGCGACGGCGCACAATCCGCGGTTCAGGACCTTCTCGGCGTAGAGCTCTAC
GCCACCGTCGGGAAAGTTGAAACGCTTCTGCACCACCGACGTCAGCTCCCTTATCCTCCT
GCCCTTCTCGCCTGAAGGCCAAACATCAGCAGCCACCAGAGCAACAAAATCTCAGATCCG
GCGTCGGAAACAATAGGAAGACATGGGATGCTTGCCGTCGGGAAATGCACGTACCGAGGA
CGTTCTGGGTGCGGGTGGCGCGGATGATGATCTCAGTGCGCATGGGGGTGACCCGGATCT
CCACGCCGGCGAAGCCGTCCTCCCCGAGCTCGCGCGTCAGCATCTCGTTCAGCTCGGCCA
GGAACACGCCGTCGGCGACGAACTGCGAGCGATCAACGGCGCGTAAGAATCTACATGTGT
TCTAATCAAGCTGGGGATCGAGAAGGAAGAGGGCCCGGTCTCGTACCTTCCGTTTCTTGC
TGATCTGAAGAGCCATGTTGGAGAAGGGAGGGAGGTGGTGTGGCGGCGGCGGCGGCGGCG
GCGGCGGAAGATGAACCCTAGGCTTGGATTTGGAAACGATGAGGAGCGACTGCGAATATA
TAATAGATCGATGGAGCGTTAGGGTTTTGCTGCAAATGTTTAGGCCGGTCGGGCCGCCGT
GGCTATCTATCGGGCCGCCGCCCAGTCCTCGCAGTTCCGTTCAAAGCTGGCCAAAACTGG
TCGTCCTAGTCGGGTCGGCCCGACAACCCACACGCTAGGCACGACACGACTTAAAGCATC
TCCAATAGTCCGTATGTTCAATCGTTGTTATAAGTGTCCACATCATCAACCAACAACACA
TCATACAAGCTCTTCAATAGAGTGTATGTTAACCGTATGTAAAATAACTAAGTGGGTCCA
TTAAATGTTGAAGCAATAACCA