| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location | No map location |  |
Predicted Genes from contig_1559537
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_10793 |
9 |
3978 bp |
MLOC_10793.6 |
Available |
Available |
LOC_Os02g13780.1, FRAME:+2, EVALUE:0.0, 13102.m01532 protein receptor-like protein kinase 2 precursor, putative |
| MLOC_10655 |
1 |
2867 bp |
MLOC_10655.1 |
Available |
Available |
LOC_Os08g36994.1, FRAME:-3, EVALUE:0.0, 13108.m03891 protein protein transport protein, putative, expressed |
| MLOC_10654 |
1 |
632 bp |
MLOC_10654.1 |
Available |
Available |
LOC_Os09g28620.1, FRAME:-3, EVALUE:9e-33, 13109.m02824 protein gibberellin receptor GID1L2, putative, expressed |
| MLOC_10702 |
6 |
2603 bp |
MLOC_10702.4 |
Available |
Available |
LOC_Os03g08570.1, FRAME:+2, EVALUE:0.0, 13103.m00988 protein amine oxidase, flavin-containing, domain containing protein, expressed |
CDS Structure of MLOC_10793
CDS Structure of MLOC_10655
CDS Structure of MLOC_10654
CDS Structure of MLOC_10702
Contig Sequence (8832 bp)
>contig_1559537 8832 assembly3_WGSMorex_rbca.fasta
AGCGCGGCCCAGGAGTCGTCGTAGGCGGCCGGGAGCGGGTGCTCCGGGGCGAGGCGGTAG
TCGACGGAGACCGCGAGGACGCCCGCCGCGGCGGCGAGGGCGTTGAGGTACTTGTGGTAC
GTGGGGTCCTTGGCCGACCCGATGAGGAAGGCGCCGCCGTGGAAGTAGACGACGACCGGG
AGCTTGGCGGAGGTGTCCTGGAGCTTCTTGGGAAGGTAGAGGCGCACGGAGAGGCCGGTG
GCCGCGTCGAGGACGACGTCTTCGGAGGCGACGCCGGTGGCCTCGTCCACGCCGGCGGGC
AGGATGGTGGGGTCGTTGAGGCGGTCTATCTTCCCGCTCTTGTATATGCGGAAGCTCCCC
GGGGCCTCTAGCAGCACTTGGTCGTCGTCGGCGGCGGCATCATTGCGTTCTGAGGTGGAA
CGAGCTCTCGAACGCCACAGGCCCGGGCATCTAATTCGAGGCGAGAATGTGGTCGACAGG
GAAGGCCGTTGGAGTTGGGGTGACCTTCTTGTCCGATCCGGTGGTAGCCGGCGGCAAGGT
CGGGTGGCCGCCCAGGCAGTGCAGACGGCGACTCCGTTCCTGATGGTGCTGGCCATGGAG
GCCGAGTGCTCTTCTTGTCCGGGTGTTGCTTGGGCCTTGGGTGTGGTAACAGGCAAACAG
ATAAGAGACAGGCGTTGCTCTATGCTTAGGCCGGCTTGGATGCAGTAACAGTGCTAACAG
ATAAGATTTTGTGTGGTGGCATTGGCAAGGTCCGGCCGTCCAGGACCATCACCATGCCAT
GCGGCACGCCAGCAAGGAAACGTGCGAGTGCTTGAATGGACCTGACCGACCGCATGTGCT
CTAGGACAAACATAACCTAACGGTCACGTTCTAAAATGGGCACGTCGAGAACGTTACGTC
AAAAGATCTGATAGCGCTCGCCGAGACATACGTACGTGAAGATCTCCGTCTGTCCGTACC
GCGAAACTCCGCTGCCCGCGCGATTTTCCCTGGTCCCCGGTTCAACAGCCCGCTGGCCGC
GCGCAACCATCAGCGACGCCACGTTTTGTTCGACGTGGGTTCAGATACGCCGGCCATGTT
CTCTACTCGTACAAGCCAATCTATTTTCAGTTATATATGCTCATCGACATATACCAAACT
GACATGACACAGTAGCATGAAAAAGACCTGTTTTCTCAACAGAAATGACAGTTTACTTGG
CGCATTTTTACACTTTGATAACCGAAGCGCATAAACCCCGTCAACACAATACAAAGTAAC
AAGACACGATAAACAAGAACGAACAATGCCTCTTTACTGTACACCACAAGAGATGAGCGC
TTTGGTGGTACAAAATTGCTCTCCTCAGGGTCATATTCATATATATATAACCTATTGCAC
CGCTAACCGCTGGAGATGGTCCATGAAAACCTCGAAGCTCACGTCATCCGTGAATATAAC
GTCTCCTCCGGGGGCAGGGTTATCGGAGTTGTATGCCACTGATGGGTTTAGCTTTGCCAG
TAAAAACCGAGCCTGCAGGTTCAGACGAAAATGATATTTACCTCTTTTCTTCAATAATAA
AATGACAAGTACAAAAAGGATATTTTACCTGAGATCCATATTGATCACAGACAACCAAAC
GGGGTACAGGGAACCGCTCCTTCATTATTGTGTCGGCTTCCTCATGTGGAGCTTTCAACA
GCTGGGCGAACACCTGACCATCACGCAAGACACAAGATTAAGCACTGGAAGGCACACTAT
ACTTTGCAATCTGAATCAAGTCTTTCGTGATCAATAAACTAGACTTGTGTGCATCTCAGA
AAACCGACATTGTTCTGCCATAGCCTGACAACCAAATACCTCGTGGCCTTCTTGATCTTG
GTAGCCCGCATTTCGCCATTGTGCAATGTTCATCCCATGGAAGATAACGACAGAAAAATA
AGAATCCAACAAAAGGATCTTGTCAGGAGCAATTGCAGTTGCGTCCAAGAGAACAGGCAT
TGGCCCTGATTGAAAGGAGTAGGATAAAAGTGAAGGTTGAATCATTGCGACTGCATTGCC
CACATTTTCCCTCTCCAACATCATCCTAAAATATGCGGTTTCATCGGGGCTATTATTGAA
AACCTGCATATAGGGAAGCAATTCAGTATGTATAAACATGTAAGTTTTCATCTTTGTAGA
ATTGTTTAATGAAGAAAGGCGAGAACCCTCAACCTGGACAAACTGCGAACGCCTCAAATT
AAACATAAACTGGGGGAATATTGATAGGCGTGGAGACAAACTGAAAGATGAGGGTGTTTC
CTTCTGATAGTCTCCAAATTTGGTACATAAGCGTATCAAAGCACGGTCAAGCCATCTTAT
TGGATCAAAATCAGCCTGAAAGCATCCAGACAAGATAGTGTTCAATAAAAATGGAAATAT
AACTTGAATTTGTAATTGTTTAAGGCCTGAATTATTTCAGATAATCTATGTGACATCAAC
AGCCAAGTAACTGCCTGCAGCTCAAGTGCTGAACAATACTGCTAAAAACAATTATCCATA
TCGGCTAAGTAAGAAATGCATTCAGTTTGTAAATTCTAAAAATGGACTGATATTGTGAAC
TATTTAATTTAATTATGAAACTCATGGATGTACCTCAGTTTCCATCTTAAATGAGACCAA
GCGTGCCACAACTGCCGCAGCGGCTTCTTGATCAAAGCCATCTATCAGCTCCTGAAGCAC
CAAAAAAGTTTATTCATAAACAAATAAGTATTTTGTTCAAAAGAATAACAAGCAAACACC
AGAAACACGTCTGAATCGAAAGGAACTGACATGAGCAACAATATTCCTCTTTTCTGAACA
TAGATTACTTGTTCATATCAGCAAAATCAACTATGCTCACTAGATGGACGGTTCCTCTTC
GTGCATGTCTTTTGCCTTCTCTTCTTTCTTTCTTTTTGCCTTTGCAATTTTATTGTAGGT
AGCTTAGTTAAGCTTTCCATTCAGTTTTGCTGTTGTGTTTTTGTACTTTTTATGGTTTTA
TTTGGTTTAGTCACTAGCCACCGTTTGTGGATTGTACTTTCTCGCCTTGTACAGAGTTCT
TCTAATAAGGAACAACAAATATTTCGATGCGAAAACTGTGCTCACTAGAAGAAGTGTCAT
CAAGAATTCATGATTAGCAAAGTGACCAAAGATAGAGAAACTAACCTGCACACTATCAGA
ACGAGAAGCCCATGTTCTGGAGATCGTAGTAGTTCGCAATCTCATCTGGCCCTCATGATG
CTGATAACTGAATGTGACACCATCAAGTCAGACAGGTAAGTAGATCTAAAGCAGAATCAG
ATTGTTTGGAAAATTCAAAAGGAAACAAAAATGTTTCTTACTAGGTTACAAATTGAAGGT
AGAGCTGTTCGCCTGTCTGTTGAGCGCCTGAATCTGGGCCAGCTTTTCTGGAGATGTCAT
ATACAAAGCAAAGCGATGTTTTCTTGTCAAGACCACACATTTTCCAAGCACTAGTGTTTC
CCTGACCAATAACAGTATCTGCAGACAGAGGACTTTTCTGCATACGATAACTGCAACATT
AGAACAGCACAAAATTGCAGTCTTGGAGTATAAGCTTTACAGCTACAAAGTTAACAGCAT
GGTTGTACCTTCTCCAGGGAAGTACAAGGCCCAATAATGCCTTGAATCTTTAAGTCTTTT
GAGCAGTTAATCTCGAGAATACCACTGTTGAGGCGATTCTAAAATATTAGTACAAAATTT
TAAATAAAGATGTCACCTTCACACAAACATTGAGTGTATTATATTGACAAATTTTAGGTT
CATTTATGTTATTCGGAGCAAAAATGTTTTCTTTAACCGGACAGATATATACTCTCCACG
TTCAGAAAATAACCCTACATGGTATATCGATGTTGATGGAACAGGGACAAAAGAAGAAGT
ATTAGACAAGACATAGTTTCAAGAAAATGGTAATCATCTTACATAAATTTCTGGGTATGC
GGTAACTAAAAGCCTATTCTGGGAAATGCAGATTTACTATTTGCAAACATGCAGCCAATT
TAAGATTTCAAGCTATGCATGCAGGGTAGTATATAAATATTGCCCAGAAACCCGTCACAC
CATATAAGGGTGGAATGCAGGTGGCCTTGATATGCAGAGCAACCGAGCTACCTTGAAAGC
TTCATTGGCACATGTACGACTTTACAGGATAGTATGGAATTTGAAAATGCGGAACCCTCA
CACTGGTGAAAAAGAGCTGGATAAGTACAAATTGCATTTGAATGGTTAGGCCATTCGGTT
CCTATTCTCTCTCTTTTTTTAACGGATATTTTTTAATATAACATCAACAAAATATAAATA
AGAGCAAGAGAAAATAATGGTTTACTTGAATGATAATCCAAGGCCGTTATCTGCTGACTG
AAAGATGCGGAGAAGCGAGTCTTTGAAAACAGAGTGACCAAAACTTTCAGCAAGCACAAC
AATTCCCCCAGTCTTCTCAATTGCAACCTTCATTTCAGCAACACCAACCTGAAAACTCAA
GCATAAAGAAAATGTTGCTTCAGACAAAATAACCATGACGCACCAGATAGTGTACACAAA
GGTGAGTTTCCATAGCTTCATTTGGCAGTGTAGTAGCTTTTCAAGAGCACGTGTTTACAA
CTAGTTTTGGATACAACAGTTAGTTGATAGCATTTTTTATCGACAAGACCAACATCTTAC
TAGCATAAGCAACTTCTACTATAAATAACTAAATGCCACGCGTAGTACCGCATGAGGACT
GTGGACTTGCCCTTCATAACTCTGATTGTCTATCAACTCTGTCCTATTACAGTCACTGGA
AGCAACTAAGTAGTTTCTTACATTTATTACTTGCACACACTGGAAATAGTATATGTGTTG
AGGTCCCTCACTAGCATACGACTCACAGTAATAGCTAAGCTAATGCTTTACATAAAATGG
ACCCATTCGAAAAAAAAGGTAGCTAATTTGCATTATGATGATACTGTCGGTCAGGAATCT
AGTTCATGTCTTAGAATTGTGCATATGGATGATATCTGATGCACTAATATATGGATATGT
GATACCGACATGGACATTCAGCACAGGCAACAGTTAAATAACTACAGTTTTGAATCGAAG
CTACACAAATAAGCAATAATCAATGGTTCTAGCTAGACACCTCTAATATTAATAGCTGCA
AAATCATGGAGAAAAAGGTGAAAGCGTTAGAGAACACATTCAACAAGCTGATTTCTATCC
ATACAAGGGTATGTGTGGCCTCATACTTAGTACCCCATCCATTCTCTTTTTGCTTGTCAT
TATGGATATCTTTTTGAAGTATATGTGGATTATCCAAACTTCTCCATTAGTTCGTACTTT
TGGTTCTACCGGTTGGTGCATGAAACTCAATAAAACACATGTTGTCTCCGGTACACAACT
TTGAATATACCCTTTTCTAATTATAAATGCAATGATATGAAAGTACTTATGATGCCAATT
CTGCTTGATATTATTTTGACAAGTCTAAGTAGCTGTATATGCTAGGAAACAGTTTCCAGG
TTTAACTGCACTAAGACGACATCAATAAAAGAAGTATAAAATAAGCAACAGACCTGATCG
ACTGCACACGCAAACAAATCCAGCACATGTCCTTGGTGCACAAGCTGCTTGGCAATCTGA
TCATAGAACTTAACAGCTTTATCATGAAGTGGAGCCGAGTCTTTATCGAGGTCTTTGTGT
GAGCGAATTGGCTCTGCTAAGGATTTCGATACAATCTGGAAATTTTGCAGAACAGTCATC
ATACTACACAAGAAGCATATAAAAGAATATGTATACATTGTACAGTTATTATGATATATG
TAAATCATAGATGACATAAGTTCCAAGCATAATCAACATATGTATTCAGCGCAATTTGGC
AGAAATCTATGGTGTGTATTTCTGTCCTTCGATAGGGGGCCTTCTGGCGCACAGTGCTCT
AAAACTAATGAAAACAGTGAGTTAAACATGAGTTTACCTTTCAAGAAAAGAAACAATAGT
ATCTTGTTACAAGCCAAAGGTGCAATGCTAGAACATGATAAAATAATAGTGTTTTTAGAA
CATCGAGGAAATGATGGTGCTCCAAGCTTAAAAACCTTTCTGGTTGCACATCTAAGCACG
TGAACCGAAAACTGAGTGTGACAGACAACCAAATAACTCAAAAGAAGGCAATCATTCAAT
GTTATTTGGACTTACAGAACCAGGTCCCTCTGTAGATGGACCACCAACAAATGCCATGAT
CCTAGCACCTGATCCAGGGACACAAACCCCCAGGAGACTGGCCGCCACACTTAATGCAGC
TCCAGTGCATCTTGATGCACGTTGATCAGCTGGAATATGCCAAGGGTCCTTTTGCAGCTC
TTCAATAACCTGTACATACAGTGAAATCATCGAATCATGTGCTTGACACATTAAAAATTT
GGAATATGAACAATTATATGGACAATATGATCTTCTATTGAGTGATATCGATTCTTAACT
GAGTTCAGTACAAACTCGCACTCCGAAGCAGGCACAAGGAATCTAGAGATGCTCTCTGAT
GAAAGACCATCCCTAGTTCCAGCTATTACCCCTGTGGTGGGCTTTTGTTTGCCTGCAAAG
AAGCACATTTGCTCCAATATTTGTTCCTTGCTGACCTCCTTTGTTCCCTTGAACACATAT
GACTTCGGCAACAAACCAAAACCCAATTCATGCACCTACATGCACCAATAATGAAAATAT
GTTGCTAAATAAAGCATTGAATACAGAATGAAACATTTAGGGACAGAACATTATGAGTAA
ACACAGAACTATACCTGTACATATGTCCCAAAAGTAATGAACCCAATAAGGGAATTATCT
GGCAATAGCTCAGTAGCCTGTGCCAGAGCAGACTTCAAATAACCAATTTCTTCCTCGATG
ATGCAAGTATCCACAACAAAGATGAAAACAGGAGGCATTACAGGACCTGTTTCTGCAGTG
GATATGTACTCAATTGTGGTATACTGAGGAAAGAGTTCTGGAGGGAGATTGTTTTCTGAG
ATCGAGGAATAGTGTTGAGGGAATTGATTGCGCTGAAAGCAGAATGTACAGAGCCAGATC
TTCGCATTATAGTCTACTCTGGAGAAAGGATTGAGGATTGAACGACACATGCGGCAGCGA
AGGGGAGAATATGGGACTACTGGCATATCAGGAATTGACTTGAGAGGGGTATAGATGGCA
GAAACAGGGACGACGCAGCTCACAGCATCCTCCTTTGTGCCTGGAAAAACGTTCCATGGC
ATCCTTATCCCATCCAGAGCCTCAAGCTCGAGGAACTCAGACATTTTGTATACAGCAGCC
TTATGTATGCTATTTGTGTCAGGCCTCTGCAAGTGAAATGATACCCAACCTGCAAATTTC
AGATCAAATAGCAAGTGAGAAGTCGGTGAGCATATGCAAGCAAACATAGAGCACCAAGAC
CACCGCAGAAGGACAATTCAATACAATCTGCTCAAATGCAATATCTGATACAATAGTTCT
TCCACATCAAAATTGTGTTTTTGCACGTTCCTAGCAAAACTTTTTACACTCATGCCAAAC
GAATAACCGAATGTGGTGACATGCAGCGCGAAATTGCCCTCCGGGTAGCCCAAAACTCCC
ACAAACTAGCGAAGTGGCAAGGGCTGATTTCGACTTGTTCTACCTGTGTGACAAAACCGC
CGCAAAATATTCGAGATCGCAATTGCTTCCCGGCCATCCGCCCACCAAACACTACCGAAA
ACCCTCGCAGCTAAACACGGCGAACCCTAGTCCCTGGATCTCCAAGAACGACCTCGCCTT
CAGGAAACGGAAAGGCAGGGGAGGCAAGCAGAGGCGGCGCTTACCGGCGGATCACTCGCG
AACACTGCCGCGCCGCGAGAAACAGAAGGGTAAGTCACCGCCTAGTGCCGGCCAGCCGCA
CCGTCGCCGGCGTTGGGGCAGGAGGCGATGGAGGCGGCACGGTGGAGCGCGCGATGCGAT
CGGGACTCGGGAGGGGGCTCTCCAGTCGGGGGACAAGAAGGAGAGGGGTGAGGTGGCGCC
GGACTGAGGTCTTGTGGGGCCGATGTTCGGTGATGAAGGGCTCGGATGGGCGCGTCGGAA
GCGAGGCCGGATCGGACGGCTCGCACGAGGCCTGCTTGCGTGGCCTGCCCTGACTCGGCT
TCCGGTTGTTGTGGACACCGGGTGTCTCGGCGCTGGCAAAACTTTTCCGACAACCGCGAG
AGTAGGGGTTTCATGTCCGAGCCGGGCTGGCGGTCCGTCGTCCGGAAAAATTAAAACCGG
TGTCTTGTTCGGTTTTTCTTTTAAAGATGCAACAAAAAGGTTTTTAAGCAATTTTTTAGG
GCTTTTAAGCAAACTTTAATATGCAAAGGTGTTTTTAGCAAAAGCAACCACACGCCAAAG
GCCCACCAACCGGGCTCGATTTTCTTTTTGGTGATTGATTTATCGAATTACATCTATAAT
ATTATAATATGTGTATTTGTTTGATTCGGCATGAAAAAGTAGCGTCATTACTCGACAGGG
TTATGTCGTTCAAATGGCGGAGGTGCGGATGGGGGGAGGGGGTCGGTACGAGAAATGACG
GGTGACGCAACTGCATCGCCTTCACGCTCTCAGCTCGCGTGTCGTTTTAATGCCGACACC
AGTGAAAAGTTGCGCATGCTTTAGACCAGCATGAAGCAGCGTCGACACTTTCAAGTGACA
TGAATGCGCGACAACATCTTCACGCATGAGAGAGTGCGAGAGAGATTTTCGGGTGGGTCT
AGGGTGTCGGACTCGTGCATGGCAGCGGTTCGGTGTAGATCTCGGTGGTCGCTGTATCAT
TAAAAAAAAAAA
