Contig Data
morexGenes
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Map Locations of contig_1559533 (5226 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1559533

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10647 1 1383 bp MLOC_10647.1 Available Available LOC_Os09g36440.1, FRAME:+3, EVALUE:0.0, 13109.m03592 protein transcription initiation factor IIB, putative, expressed
MLOC_10648 1 469 bp MLOC_10648.1 Available Available None
MLOC_10649 1 199 bp None Available Available None





CDS Structure of MLOC_10647






CDS Structure of MLOC_10648






CDS Structure of MLOC_10649






Contig Sequence (5226 bp)

>contig_1559533 5226 assembly3_WGSMorex_rbca.fasta
TCTCCCCCGCACGCCACCCCACACCACCACCGCCGGCGAGGAGCGCGGCGCGGCAGGGCG
GGAGGGGGGCGGCGCGGGCGGCCGAGAAGATGAGCGACACGTACTGCCCGGACTGCAAGA
AGCACACGGAGGTGGCCTTCGACCACTCGGCGGGGGACACGGTGTGCACCGAGTGCGGCC
TCGTCCTCGAGGCGCACTCCGTCGACGAGACCTCCGAGTGGCGGACCTTCGCCAACGAGT
CCAACGACAACGACCCCGTCCGTGTCGGCGGGCCCTCCAACCCGCTCCTCACCGACGGGG
GCCTCTCCACCGTCATCGCCAAGCCCAACGGCGCCCACGGCGACTTCCTCTCCTCCTCCC
TCGGCCGCTGGCAGAACCGGGGGTCCAACCCCGACCGCTCCCTCATCCTCGCCTTCCGCA
CCATCGCAAACATGGCAGACAGGTCCCCTTCCTCCTCCTCCGTCCCCATTTTCATTCATC
CTCTTCGATCCGATCCAATTGTGCCTCGATTTGTCTCAGATGTAGTACCAGTAGCATAGC
TAGTAGCGGGATCAATCAATCGCTCGTCCGTTCACATGCCCTCGTCCTGGTTTGATTTGA
TTTGATTTGATTTGATGGGCGGATTTAGGAATCCACGAGTGCGATAGATTTATTATCTCC
GCTGGCTGGTCGAAGTCGGTTTTGTTTGTGGATTCGGAACGTGTGATTGCTCCGTGGAGG
GGGTTTGTTAGGGCTTGTGCTTTATCCTCTACTAGACTAGTACACTAGAATGGGTAGCGA
TCTTATGGGTAGGTGGTGCGTGCCTTTCACATGGATCTGGGGGAGAGAGGATGTTCTCCT
GCACAAATATCTAGAATTTTGGGTTGATACAATGGATCTCATCAGGTACTATAAAATCCT
ACTACCAGATATTTATTTTCGTGAGTTATAATAGGTTTGGTGTAATTACAAATGATATGT
CAGGCCTGTCGCACCCTCGGATGATTGTGCTATGCACCTACGGATTGTAAATAGCATTGG
CAATCTGTTGGTCATGCCATTTAACACCTACTTCCTCCATTTCTAAATATGATACCTTTT
AGGGATTTCAGTACAGACTACATATGGATGTATATAGATACATTTTAGAGTGTAGATTCA
CTNNTTTTGCTCCGTATGTAGTCTATATTGGAATCTTTAAAAGGTCTTACATTTAGAAAT
GGAGGGAGTAGTTTCTTGAAGCATGCATAATAGTAGCCACTTAGCCGCCTAGCAAGTAGC
AACAGCAAGCTGGTGTTTACAACATGGCTAACTTAAATCATTGATGAACTTTCAATAATC
CTTTTCTTGATAAGGCATTTGGGATTGTGATAGCTTCCTCTTCTACCAGTGTGTCTAAAA
TGGGATGTTGTCACAACAAAACTAGTTTACTGAACTGAATAGAATCATAGATGTGCAACA
CTCAAAGATAGTTCATTGTGTAGGCTGATTTATTACTACTAAAGTAGTTTGCGCCTTTTT
TGTTTCTAACATTTGGATTTGACAATACATCGACATCTCTTCTGCAGGCTGGGTCTTGTG
GCTACTATTAAGGTAAGAAATCTGATTTTTTTTGTCCATTATGTTCACAGCTGAAAACTG
AAAATACTTGCTCCCTCTGATCCGTATTATTTGTTGCCGCTTTAGTACAACTTCAGTACA
AAGTTGTACTAAAGCAGCAAATGTTAGTATGGATCGGAGGGAGTACTACCGTTATACCTG
CATGGGAGAACTGATGAATCAATTAACTGCATGTACTTTGGGATGTGATCAAATCATACA
TCAGGTTGTCCTGAAAATACTGAAAGCTCAGATCTTTAAATTCACTTTGAATGGATGTTT
AAAGTTTATTAGATTGCTTCTAGAGCAGTTTACAAACTTTTATTTATCCTAAGCATGTAT
GCTAAAAGATCAGGGGTCCATGTTTCGCATTATAACGGGTCTATTTTATTGTAAGAAAAA
ATAGCACTTTAGCAGTATGCCGAATACGTGGTGTGTTGCACAACACTTGTCCATGCCCTC
ATTGTCAAGGTTCATTGCTGTTTCCTTAGGGTTATTTCAAGAGTTTCCCTATACCGTGAC
ATGATAAGAGTTTATAGCCATCGTATACTCATATTGTATTATTTTTGTGTTGCCGTCCTG
AAGGACCGAGCCAATGAAATCTATAAGAAGGTGGAAGATCTCAAGTCTATCAGGGGTAGA
AATCAAGATGCTATATTAGCTGCTTGTCTTTATATTGCTTGTAGACAAGAAGATCGTCCT
AGGACTGTAAAAGGTACATGATGTTCTAGCAAATTTCTAATTTTGTAGACATTAGAGCCC
AGCAGAATACATCACATGAAGCCATTCTTTGTTCCGATGGCTTTTTGCAGAAATTTGCTC
AGTTGCCAATGGAGCAACAAAGAAAGAGATTGGTCGAGCAAAAGAGTTCATCGTGAAACA
GCTGGAAGTTGAAATGGGCCAATCTATGGAGATGGGAACCATCCATGCTGGAGATTTCCT
GGTTCGTTGCTACTTAGCATATAAACTTGCAAAATCAGAAGTTGGTAACTTATATGGTTG
CAAATCTGCAGAGGCGTTTCTGCTCAACTCTTGGTATGAACAATACTGCTGTTAAAGCAG
CTCAGGAGGCAGTTCAGCGCTCAGAGGAGCTTGATATAAGGTTAGGCCTTTTTCCACTTT
GTACACAGAAGATTGACTGGTCCTATGATGCTATCATGTTCCACTTTGATTTGAATGAGA
CATGAAAGTTTGTCTAGTTAACCTCAACATTAGTCCAGGTCTACTTTTGACCCTGGAAGT
CTCAATCACTGGTGTCTACTCCCTCCGTCCCTATATATAAGTCTTTTTAAAGATTTCATT
AGAGGACTACATGCGAAGCAAAATGAATGAATCAACAAATTAAAATATGTCTATATACAT
CCGTATGTAGTATTCTAGTAAAACCTTTAAAAGACTTATATTTAGGAACGGAGGGAGTAG
TTTCATGCTTGAGGTGGTTCCATGTAGGGTGATGTCAGGACTAATGAGTCATACACTATT
AATATTAGAGTGTAACTAGTCTTAAATTAATTGCAAATGCAGCTAATCCGTACTCTATGT
AGCATGCTTTGGTTCAGGAGTGTATGCAGCTAGTGTGGTAATGCTTTGGTTCAGGAGTGT
ATGCAACTATATACTAGTGTGGAAATGCTTTGGTTCAGGAGTATGTCTTTTTAGAGATTC
CACTATAAACTACATATGGATGTATGTAGACATACTTTAGAGTGTAGATTCACTGATTTT
GCTGTGGAGACTTAGATTTAGGAACGGAGGAAGGATATGCTAATGTGGAAATTAAGTCCT
TACATGTCAATTTCCTAGTGCACATTTATTGACCTATAAAGATATGTTTACACTTCATTC
CAATCTGCCGTGCAGGAGGAGCCCTATTTCAATTGCGGCTGCTGTCATTTATATGATAAC
CCAGCTTTCAGAGGACAAAAAGCCGCTTAAAGGTTTGAACGCTGACCCTTCATTCACTTA
TTTTCTCCTTCTGTCTGTCATTGTCGCGGGGGTAACATTAACACTGTGATGCGTGCGCTT
TGCAGATATCTCCTTGGCCACCGGAGTGGCAGAAGGCACCATCAGGAATTCGTACAAGGA
CCTGTACCCCTACGCTGCGAGGCTCATCCCGAACTCGTACGCCAAGGAGGAAGACCTGAA
GAACCTGTGCACACCATAGGAGCCGAGTCGCAGCCATTTCTTCGTTTCTCTCGCTCTCTC
GCTCTTTCTTCCTTCCTTTTCTTCTCACATAACTTTTGAAATTAGATTTGTCGGAGAGTT
GTTGTGAGCACTTGACCGGGCCATGTATATCCCCCGCCTAATTTTATGTGCATGGACCTG
TCGGATTCGGAACGAAGCTAAGTTATAAGATATGGCTTTCCTTTCTGGTAAGCTGATGCA
GAGGTTGGTTTCAATCCGTGTGGTACATGTACATCATATTGCAGTGCCAGGGCAGAAAAG
TCTCCCGATCATTCCTGCTGCTACCAAAATGTTCTTAGCAGCTAATATCCTGGATAAGCA
TTTGTACATTTAAGTTATACTCCCTCTGTTCCTAAATATATCTCTTTCTAGAGATTCCAC
CACTGATCACATACGGAGCAAAATAAGTGAGTCCACATTCTAAATTATGCCTGTGTGTAT
GTAGTTCATAGCCTAAAAAGACATATTTAGATGAGCCAATCAAAGATGGCAAGGAAGGTC
GCGTAACCTTTTGCCTGGATCGTCTTCCGGCTGGAGCTAGGCACAAGAGGAAATAGACCT
GGAGCGGTCGCCAGTTGCCGCAGAATGCTTTTCCGACGTCTTTTGCGGTGAGTCTGTGAC
CTCGACGACGATCGGAGATTGGAGAACGAGAGGGATTCAGCGAATCCGAAACCGGGTTAT
AAGGGAAATTCAAGGAGCTCTACTAAGACAGGATAAAAACTCGTCCAGAGTTGCCTCATA
CATTCAGCCCCTAAGAGCACGCACCGATCTAAATGAATGGCGCTTTTGTCCATTTACGTT
GGTCATTCGTCCGATGTCCGTCCTTTTTAATATTTGAATCGATAGTGCATCCAATGCCCG
CGATCCATTTTACCGACGAGGCCAGTTGACCGTTCTTTTTAATAAATATGTAAACATTTT
ACATTATTTGACAAACAGACGTATAGAAAATAGCATAGTTTTACAATCAAATAAAGCATA
ATATTCAAATAAATAAGTATAGTTTTATAAATTGAATAAAAATTAAATTGTCTCAAATAC
ATATGAAAAAAATACATTTATTAGTTGTCAACATGAGCCATATATGTTCAACCAAATCAT
GTTGTAGCTGCATGTGAGTTTTTCAATTACGCATTTCATAATGAAATTAGGCGAACTGTT
CAGACCTTGCCGCTCCTCCATTCTCAGGCACAACATTCTAATCTTGAAACTGAAACTCTT
GATCATTGATACGTTCCGGACGTTCATCTTCTATGATCGTACTGTGCATAATCACATAAG
TTGTCATCACCTTCCACTGCTTCTTGATGCTCCAAGGCGTAGCAGGGTACCGAATGATGC
CCCATCGAGATTGCAAAACTCCAAAGGCACGCTCGATGTCCTTCCTAGCACTCTCTTGCG
CTTGGGCAAATCTTTTTCTTTTCTCTCCGACATGGTCGGGGATTGTCTTCATAATAGTGG
TCCATT