Map Locations of contig_1559514 (5505 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1559514

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10640 1 150 bp MLOC_10640.1 Available Available None
MLOC_10641 3 2297 bp AK361947 Available Available None
MLOC_10639 2 409 bp MLOC_10639.1 Available Available None





CDS Structure of MLOC_10640






CDS Structure of MLOC_10641






CDS Structure of MLOC_10639






Contig Sequence (5505 bp)

>contig_1559514 5505 assembly3_WGSMorex_rbca.fasta
GAGTCCGTTAAGAGAGACCTGAAGGTTTGAAATATCGATAAAGACTTAGCCATGAACAAG
GGTGCATGAAAGTTAGCTATCCACGTTCCAGAGCCATGACTTGGTTTCAAGATCTTATGG
GTTTCAACTCTAGCCNNNNNNNNNNNNNNNNNNNNNNAAAGGCTTGGTTGTTGTTGTTGT
TTGTTGTTGACTAACATCACGGAAAGAAAACTGCGAGCCAGAATAACAGATCTTCACAGG
GCGAAGCGATTCAGAATACAATAAAATCCAGCATTGCTGCTTGAAATAGATCCAGCATTA
CATTCCATCATAGCTGCCAAATGTAGCAAAGAAACCAATCAATTGTTCCCACACACACAC
ACCAAAAAAAAAAAATTGGTACACTTCAACATACAGGAAACATTTTATTCTAGTGTTCGG
CGTAAACAAAAGCAAACTCACACAAACAATATTAGACTGAGACAAAACATCTTTAACAGC
AAAGTAAGCACTGCAGGGCCAAACCACAAACATAACAACAATCCTGGTGGCGGCAGCAGA
CGGTCAGCTGGGGCACAACCAGGAGACTCCACACCACTTGAATAACTTGAGTCGCAAAAG
TACAAGCAAAGCTATTATTATAGCGCACCCGGATGAACCGAAGACTCTTTCGGAGTTTTG
CATCTGAAACACAGGAGATTTATTCTCCGGTCAAAACCAGCTTCCGTGAAACAGAGAAAG
TAGGCATTGAGAATGGTTAAAATGATAAAAACGGGATTGATGCTGAACCATCATTACATG
GAAAACATAAATCTATATTTAATCGGAGTCCTAGCAAATTTCTTTCTACACATGGCACAG
ATTTCGGTTGAGTTAGATGTTAATCAGACTTGATATGGCTAAGATTATTGGGTCTAACTT
GACCAAATGACACCTATGCTGCTGACATGGAGGATGTGCGGCTATGTTGTTCGAACGATC
CATGCAGCAAGATAGACAATGACAGGAGGAGCGCACATTGCTGATGCGGCCAAGTGGTTT
TTTTAATACAAGATATGACTTTCTATATGTGGTTACGAGAAATGAGAAGTCCAATGTATA
GTTTTGTGATATTTTAGCCATTACAGCGGTTTTGTAAAAAATAGCTCTACCTCAAATTAG
GAATTATTAGGATTATATTAGTGACCATATATCCACTATCAAATTAAGCAACGAATTAAC
CGATCTATCTTTGCTTCCCCTTCTCTTGAGGTGCGGCTGCCAGCAAGGCACCACCCTCCA
TCTTGAGTCCAGGATAAACTCAAACAGTAGGACCTACACAACCCCTATCTACCCCACCAC
TTAGCAAATGCATTATATCAAGAGGAAGAAATGAATCTAAGGGCTACCCCACAAGAAAAT
TCAGCAATTTGATGTCCATTGAAGCAAAGAGGCGAGGACCTGAGCCACAAAGTTGAACAA
AAAAGAGGATAAACATAGTACCTGTTACAAAATGCACGAGATGCGTAATTATGATTGCTG
CAGTTGTTGCACAACCAGTCTCCTTCACGCCATTTTGCTCTGATAAAGTGCAAAAACATA
TGTACTCAGCTAGCTTATTCATGTCCAGTACAAGATTAATAATAAATACTACTTGCAAAA
GGAGCAACACTTTTCAGCATGTATCCATTTGTGAATGAATAGTCAACCAAGATTGTGATG
TGGGACTGCATATAGTTCAACTAAACAGTTGGTCCAAAACAACTAGAGAGTATCCGGTAC
CCATTTCACTTTTATTGTACTACCAACATAAAAGTGACATGCAAATAGCAAGAAAATACG
GAGAGAGAAAAGTAAACTGACTTAATTTTTTTAACCACTCCCAAAAATTTTTTTTGAACA
CAGCCTATCTTTTTAACAACCGCCATTTCTCAAAATTTCTGAACCACATATATGTATGTA
TAATTTCCTTTCACCTGCCACCTATAATTTTATATTTAACAGCCACGGATTCACAATATT
TTCTCTCCAGTTCTCATAAAAAAAGTGTGACTATCTTCAAACATGCAACCCTATTCCAAA
TTCAAATTAGCTATGTTTAATTATAGGGGCTCATATTTGAACTGCCCTCCATTTGCCATT
ACACTGTAGGTTATTGTACCAATTAAGATAGCATTCATTCTAAGACAAGTATGGTAACCT
ACTACATGTGTAATATGAGCATCTATGATTTATGAGAAGTATTACCCTTTCCCAACTACA
CCAGACATCCCTGGAACTTGTCCAGAGGGTAATGCCATTGAGTTTCCATTGTCATATGCA
GAATAAGTTGTCTGGCCATTATTGTTTCCAGCTCCTTGACCCATAAATAAATTATCTGAG
CCTGCTGTCTTCAATCAGATTGGAAATTAATCAATGCCATATGATAATTAGGCAAACAAG
CAATGACAAATAAAAAAAGGCCCACAAGTACATACTGAAAGTGGATAATTAGCATTTCCT
GGGTTCAGCCTTTTATTATCCCAGTCATTAGCAAGCTCCTCTGATGCCAACCGCTTATTA
CCTAATGCTGAAACAAGAAAAAATTTCAGTATAACTATTAGATTACATGTTGATCCCAGT
TACGAAATGTAATAAGAGAGTTATCACTGTGAGACTGCATGAAGCACAAGAAAGAATGTG
TAATGTAGTTGAGTACAAATAAATGATAAACTAAGTTACATAAATCATTAATGCTGCAAT
AAAAGAAGAGATTTCAGGATAACTATTGGACTTCATGTTGTCAATCACAAAATGTAACAA
CAGAGCCACTGTGATACTACATGAAGCACAAGAAAGAATACAGAATGGGGTTAAGCAAAT
AACGATAGAACTAAGTTAGATAAATCACTATGGCAGCCAAGCCAACAAATCCAGAAAATA
ATAACAAAAACTAAGTTAGATAAATCACTATAGCAGCCAAGCCAACAAATCCAGGAAATG
ATAACAAAAACCAAGTTAGATAAATCACTCTGGCAGCCAAGCCAACAAATCCAGAAAATA
ATAACAAAAAAACAGAATATGGCTATTATCAACTTCTTTTTCGAGAGTATTACCAACTTA
TGTTGAACGCAGAGAAATTGTAGAAAGAAACATCTGCCTACAGTCACCCGTTAATCAGCA
GATCATAGATGTATCACATGTGAAAAATAGTACTTTTGAATGTGCATGTACTACTAGACT
AATTAACCTATTTCTGGTGGCAAAGAATAACACAAACTTTTGAAAAGGCAAGTATATAAG
ATAGTTCCCTGCTCACTGGAATTCGGGAGGAGTAAATTTTTTTCATCAGTTAAGAGTACA
AGTTCAAAAAAAATTAGGAAATTAGAACAGAGATGTCTTACTTGAAGAACTATCTGCTCC
TGTGGATTTCATGGTTGTAGAGGCCATGCCTGATGGGACAGGTGCATTACACTCTTTACA
CTGGAAAAGATAGAATAGCAAGGAATACGGTCAATCACATTGTACACTCACTATGAAAAG
GCATACTGCAGAGAAACCTAAACTAGAGTTCATGTCTAAGTTCAGTTTGAGGTTGCTGTA
CTATGTTGTTGCTTAACTAATTTTGTAATCTACTGCAGAAAAACTGGCCACAAAGCAGAA
AAAAGGTGGTTAATCAAACAGTGAAATACGCAAAAGCGAGTTCGAAAAGCTAGATTATCA
TAACCCACTGCAATGCCAAACGAGCCTAAATAGGCAGCGAACAACAGGGGAGGAAAGTTA
TCTGTGTAATATGCAAGTAAACAAAGAACAATTTTAAGAATAAATGCAGAAGTCAGTGAA
GGAACTTAGATGATAAGAAAAGCAACAAGATCGGACATATTAAAGGCTCTAATGATGACC
TGAGAAGTGGCAGTATCAGGGCTAAACTAGAGTTAGCCACAATCAGCATAATACATAAAG
CATATTCTTATTACAGTTCAGAAGGCAGGACAACATTTACCAACAACCATTATGATTGAG
AATTAAGATATGACATTCAAGTAATATTTAACAGGTGATCACCTGAGCACGAGATGAGTA
GTTATGGAATCCACAGCTGCAGAGCCAGTCACCACTACGCCAGTCCTTTGGAACACCTTG
AAACTGATTAGTGCTGTTGCCGGCGAACTGCCAAAGAGACGATTGCATACCATATCTAGC
AGCCACCCCATAAGGCCAGTTTGCGTTTGCAAGTAGCTGCTGCTGCATAGCTGGATTGCC
AAAGTTCATCTTATAGCCAGCATTGGCAATCTCCTGTACCCTGGCCATATAATCTGCATA
CGCTGGCATCATTCCTCCCATTGATAATTGTGGCATGGCTGCTTCCTCCTTGGGCAGGTT
GCACTTCTTGCAGTTCTTTCTGGATGCATAATTATTGTTACTGCAACCTATTCATCCATT
TGCCGCATAAACCGACCACCACCACACCAGGCAGCACGACAACGCACATCCGAAGTACAC
GCACACCACCAACCAGCCATCCCGCACAACACCCAAAAAAAGAAATAAGCACACACACAC
TAGTCATTTACTCAGTAAAACTGATGGTACTTGTCTAATATCATCTACAAACATACACAT
TCAACGAGTAAAATGAACAGAATCAGTAATCACAAGTTATATAAAACACGAAAGGTAAGC
AATTACTCCCTACAGACGTTCCAGGCTCGCCCCATGACAAATGATGTGCTCTGTACCCGA
GCCACAAGAAGCAAAACAGCACCGATAAAAATGCATTCGCCCTTCAGTACGAACCTCTTA
CCCAGGTCCTCCAAACCATTACATGTAAATACGCTACGCTAAAGCCTTGTTAGTAATGCA
GCAGTTACTGTGATCATAGGTTGTAACAAGGACAAACCCGCCTAAACAAGATAATTCAAA
GTGGAACATACACAAATGCTACATCCATTAAACCTCCAACCGAGGGAGATCGCCACATGC
TTAAATTAAGCAGGCACCCCCGAGAGGCATTGGCGCCCATCTCGTACCGCACCCTATGAC
ATGATACAATACATCTCGTACCACACCCTATGACATGATACAATACATCTCGAGCCTACA
CCGTCGCCCCCAGGCGAGCTCCACCAGCCTGGCTGGTTTCCCTTTGCACTTGATTCTCAG
CTCTGCATAATAAGCCTAGAAGGGGAAGAAGGAAAGCTAGGGACACCGGTCAGATCACTA
GGCGCAACCTACCGTTACAGGTACGGCGGTGATTTTATTTTTTTTGTTCGCCTAAGACCA
TTGGAACAGCGACGAAGGAAGGAAGGAAGAAGAGAGGATGTGCTTGTACCTAGCTAGCTA
TAGCTACAGGGGGGGTGAGGCGTACCGTTGCAGATCCAGTCGCCGGCGCGTGGGAGCCAC
TTGGAGTCGCGCGGGGTGTTGGGGTCGACGAGGAGGCGCGACTGCTTGCAGCGGTTGCAG
AGGGAGCGGAAGGCGTAGTTGCGGTTGCCGCACCCGCCGCAGTACCAGTCGCCCTCCCCC
CCCCCCCCCCCCCCCCCCGCCCCGCCCGCCCCGCGGCCCCCCCCC