morexGenes - Barley RNA-seq Database

Contig contig_155942

Source Contig contig_155942

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_155942 (2118 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_155942

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10593	2	389 bp	MLOC_10593.2	Available	Available	LOC_Os06g49160.1, FRAME:-1, EVALUE:2e-13, 13106.m05248 protein thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
MLOC_10592	2	186 bp	AK365980	Not available	Available	None

CDS Structure of MLOC_10593

CDS Structure of MLOC_10592

Contig Sequence (2118 bp)

>contig_155942 2118 assembly3_WGSMorex_rbca.fasta
TTGCCCATACCCCTTGATGGGATTAATGCCGTAATTTATCAAAAAATGATGGCCGTTTCA
ATTTATTCAAATAGTACACTAACTTGCTAATGTGGTGTGTTCTCTTTTGTTTTGTTGAGA
AATGAAATAAGACATCAATTTATGAATTTCACCATGATGAGTAATCGAGCAGGGCAAGCA
AACAAAGGAAAGCACATACAAATTCAACCAAAACGCGAGAGCTCACCACGTACGACCACT
CGGAGGAGAGAAGATGTAGTAGGTAGCTTGCCATTAGCTTTTATCTGCCTCCATACATGC
AAATGCAATTGATCTCATACCAGCTACAGCTTAGCTCTAGAATCAAATCATGTAAATGAT
TTCATCTTTGTTAATCACAAGCAAGTTAGCATGTGGAATGGTCCCAGCTTGTTCAAACCA
TGAAAGTTGCACAAGTTAAGCTGAAGAAAATTCAGACAAAACTTAGCTTTTAGCTATCTA
GCATGTACACAACATTAATTAAGTGTCTATAGTGCCCTGTTATGGAAATCTATGCTACGA
ACCAAACGAAAAAGAAGAAGCAGCATACATACACATACACTTGAACTTGGTTTGATGTGT
TTAACTACCTGACAAGATGCCGATAAACAAACTCTAACACCAAGATGTCGCTGCCTTAAT
TTAGCCTTTTTACTTTAGCAGCAAATTGATGAAGAAATGAATCTAGGTTAGCAACAGGGG
AGCTTGAAGGTGGTTAGGTTGACATCCTCACCAGATGAGAGCAGATTCTCCTTGCACGCA
CCCCTTCACACAGACACAGCCAGATCAGATGCCTGAGCTGCTCGAGTGTGGATCCGGGGC
CTAGGTCGAGAAGGGGAAGGTGGGGTCGGTAGATGGCGGAGATCAATTCAAACGCTGAAC
TTGTCCTTTTTTATTTCTCTTACTATAGAGCATTTTTTGTTGAATGAAGTATTGCTTGTA
CATATCAGAACTTTACCATTGCTCTAGACAGTAGCAGATCAACTAAAGGACAAATAATAA
TTAGCTATTCATTTTGGAAGCTTTGCTACTAATTCGTATAACAAAGTTTTGTGCACAAGC
GGAAAACATCATCTCCGATAGGTATGTACTCGTCAGCCAATAATTGACTCATCTCAGAAA
ATTCAGAAGCCTTTGAGCTTACCGGTGAGCCCGGCCAGCTCCACCCATTTCTCCAGCGCA
GTGGCCGACGACACGAACACCGACTTGGAGGAGTTGATGTCGCTCTTGCTAACTGCAACA
AGAATGGAAACAGAAAAAAGAAAATGTTTTTGAGGGACCGGAGATGATGTTCAGGACCCC
TTTTCCTAATTCTTCCAGTGCTAGAGCTAAACTGATGAAGTATATATATACCTGATGTGA
ACAAGGAGGACAGCAAGGAGTTGAAGTTCTCGACCGCGCTCTTCTCCTCACTGCTTGAGC
TGAACTGTTGCGCACATACAGTGATAGAAATCAGTCAAACAGTTATGTGTGTAAGTGTAA
GTATCTGTGCGTTTTTTACAAGGGTGTTGCCTTGGAGAAAGCTGCATTGACGTTCTGCAC
TCACGGCGCGTCGGAGCCGGGGCCGAGGACGTCGCCGGCGGCGGCGAGGTCGTCCTTATC
AATGGCCTGCCCCACCTTGCTCAGGTTGTACACCAGGTCCTGCAAGTACCCTGTGGTTAA
GGATTAATTGCCAACACTAGTTTGCAAAGCATCACAGATAGGCACTGCTACAAGGCATGG
CTAGTTTAAGGCTTTAAGTTGATCGATCAAGTTGGCCGACCTGTCTCAGCAGCAGAGGAG
CTGATGATCCCCTGCTTCTGGAGCCGCTTCTTCTTGTCCTCCTTGACGCGCTCCAGCAGC
TCCAGGTCGTCATTGGCCTCCAGGATGGCGGCCCGCGCGGCGCCGCCCGAGGAGGAGGCA
CCGGCGAGCGCGGCCAGCAGGCACGACACGATGCCGCGACGCCTCCCGACGACGACAGCG
GCGTCCTGGCCCGCATTGCTCGCCGCGGCCACCCCTCTCAACGAGATGGGTTTCTTGGCA
ACTGGATGCAGCAGCGCGGCCACCTCCTGCACCGCCGCGGCCGGCTTGGACGCCGCCGCA
CCCAGCGAGCGTCCACGC