Contig Data
morexGenes
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Map Locations of contig_1559410 (4167 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1559410

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10587 2 1231 bp MLOC_10587.2 Available Available LOC_Os10g31970.1, FRAME:-1, EVALUE:1e-122, 13110.m02793 protein SNF2 family N-terminal domain containing protein, expressed





CDS Structure of MLOC_10587






Contig Sequence (4167 bp)

>contig_1559410 4167 assembly3_WGSMorex_rbca.fasta
CATATGCTCTCGCGCAGATATAACACACACCCACCCACGCGCGCGCGCACACACACACAC
ACACACATAGTTCCATCACAATGACGAAGATGGCCGCAAGTTGATCCTTTGAACCGCACC
TACTTCACATGAGCAGGACAACCAAGATAACATAGGTGATGTGATTGTACCTCCAGTGGA
CATGGATGGCTCGAATGATATGATACTCATTTTGCTATGTCACATGATAACTTGCCATGT
ACATGCTTTGTTTTGTCACCATCTATGATAAGTATGTGATGTCAAGTAGTTTTGATACCA
TGCTACATAGGATATCTTTCTGATAATTCCACATGACATATTGTGTTCACAATCCCTCAA
TCTTTGTCATATGATATGGATGAGATCTCCAAATTCACATATTTGTAATCTTTCCATAGT
AACTATGACATTCCCATTAAATTCAACTGATATGTGAATGGCATAAATGACAATTTCTTA
GTTTATGGTATTTGCATATGTTGTATCACCATGTTACCTTTGCATCATTCTTGCACCCCT
CTTCATATCACTGCATTAACTATCCAAAAGCATGGTTGAAATCATGTGAAGTGGAAGGTT
GTGATGGAGGAAAGTGATGAACAATAAAACTGGAGCTACAGACTAAAGAGAGATGGTTCG
GTCGAATCTGAGTCATATTGCAGCCGAAATGAGCTTCCCTATGGAGACAAGAAGTTAAAG
TTTGTGTTACTCAAACAAGAGCAAAATAGGTGTTCAGATGCATTAGCAAATTTTGCAAAG
GTTAATCTTTGCACCGCTCCTGACTTCGTAGCTACACTTCTGGTAGCAGATAGTGCGCCT
TTACCTGGCAAAACCACAGCTCATTTGCAGACAAAAAGAAAATTGATTTCAATTAATTCC
GTAAGTGAACCTCCTGACAATAATCCTACCAGGTGAAAAACTCAATTCCAATAAATGCAG
CTCTCCATTTGTACCAAAAGTTGAGTTTTGCCTTCTCATAAGTATGTACACTAAAAGCCT
TGCATACAAAATGCATACTACGCGCAAACCCTTATAAAAACGAGCAGAAATGCGTAGCGG
TGATTCCACATGGAGTAAGCCAAGTGGGGTCACCTCAATCTACCATCTGATCTGCTTAGT
GTCTCCCAACTAATGCCCTGGCCACATTCGTCACAGCTTGTCGTGCATCCAGCTTTGGTA
CCATGGCTTCTTAGAGTCAGCATGTGGTTCAAGTTGGTGCATTTTTTCTGGTTGTTCGAA
TGAGACTTTGATTGTTGCGCCCGCCGACTTCTTGAGGTAACTTTAGGTGGTGCAGGGTTG
GTATCTATTGGTTTTCTCTCGGTGTCATGTCTTCTTGCCACGGCATCCAACTGCTGCGAT
TGTTTAAAACTCGACCATGCCATATCTTGCTCTTCCTTGGTGAGTCTTTCCTCTTCGTTT
TCTTGCAGAAGAACTTCATGTTCATGGTAACCTGCGATCCACCTATAAATTTGAAGCAGA
TATTACTCTTCCAGCAACTGATTAACATACATATACATTCAGAGAACGCAAACAACATGA
ATTAATGTTTGACAAAAAAAAGGATATAGGCAGTGAGAAACGAAATAAACAAGGGCTACA
TGTTTGGTGAGTTTATGGATTCCAAAATATTGGGCATTATAGATTTTATAACAAGTCATT
TTCTTACAAAAGAGATTTGTGACGTGATATCTCCTACTCCCTCCGTCCCAAAATTCTTGT
CTTAGGAGGTTTGTCTAGAAATGAATGTATATAAATACCAAAACATTCATATCTAGACAA
ATCTAAGACAAAAAAATTGGGACAGAGGGAGTATAAGTTTTAACATAAATATGTTAGGCA
TTACCGAGGGTGATCACTAAGTAGGTTCAGCATGAGCGTGTCCACCGGAAGTTCAGTGCT
ATTGGGCATGGATAGCTTCTCCGTTCCAACCCTAGTGCGATCAGTTATGGTATCATTCCC
ACTCTCATCCAACAATTCCTCATCACCAAATTCAAAGAGATGCAACATCTCCTCTTTGGA
GATTGTTCTGGACACTTGCTGTCTATCCACCACTCTTGCTGCAAGCCCTTCTTTTGTCAC
CTATCAACAATCAAGAGATTCATATTGATAACATTCAGAACAAGAACTTTATTTTACCAT
GTAAAAGAAAATTTAGTTCAAACTTGGGACCCCATCAGAAGATTGCAAATGTCACAATAC
CTGCCGCTTATATATTTTCTCTTCCATTGTTCCATGTGCCATTAGGCGGTAAGCATACAC
AGGCTTGATCTGGCCATACCTGTATACGGAGTACGCATCAAATAAACATGTAATCACATA
AAAAATGGAACTAATGTGTGAACCATGCTACTAGTTCTTACCTCCAAACCCGATAAATGG
CCTGCAAATCATGTGTTGGATTCCATGAACCGTCCAGAAGGACCACTCGGTTTGCTGCAT
GAAGGTTGATACCCAAAGATCCAGCTCGAGTAGATATCAATGTGCATTTTACTCTTGTGT
TTGCAGGGTCATTAAATCTTTCCACAAGGTTCTGCCGCTCGGAAGGTGGGGTGCTCCCAT
CAAGCCTGTATGGCACAGTACAAGTATGTGATATTTGGACAATTAAGATTGATGATACAC
AAATCATTGCAGAACAGGGTGCTGAAAGTAACAACACCATCTCTACATCAATAGATAATT
ATTATAAACACTATTTGTCTAACTACACGCTATTAATAAAGCAATCAACTTTGCAGAAAT
AGTGCCAAAAATGCTGCCATAGGGGACCAAAATGATCCAAAAACTTGTTTCAGCATGCTA
TGTCATGATTAGTTGCAAGATTCAACTGATCTAATTAAGTCAGCTTGCATGGGCACCAGC
AGCAAGCTGACAGCATCTGGATGAGGATATTCTGGAACAAATTTTACAAAATTGAAATAT
CCCACCATCGATATATACTAGTCCCTCCGTCCCGAATTAGTTGTCTAAGATTTGTCTAGA
TAAGGATGTATCTAGACATCCGTATCTAGACACATTTTAGTGTTAGGTACATCCGTATCG
AGACAAATCTAAGACAACTAATTTGGGACGGAGGTAATATAGTCAAGCAGGCAACTCCTA
GAGTCCTGGTCCATCTCAGTTCTTGCTAAAACAGCTCACACCTCAGGTCAACCAGGAAGG
AAGCAACACAAACAGACACATTCAGAGTGGCAAAATTGTAGAATCCCTGATTCACGCAAT
ATGTCCTAAAGAATAGAACAGCTACCAGTCAGTAAACAAGAACTGGTCCTGTTTTCTGAA
CACTGTCTACTTCCGTGCAATTCACCAACCACTCTTCTTGCAGGATTGCTTAATACTCCC
TTCGTTCCTAAATATAAGTTTTTTTAGAGATACAACTACGGACTACATAAGAAGCAAAAT
GAGTGAATCTACACTATAAAAACATATTTAGGAACGGAGGGAGTACATTATAGTTAGATT
CAATCCAAAAAAATTGAAAGAAAAGATAAAAAACATAACCCAGCAATTTTCCAGCAAAAA
GACAAAGCACCAAAGATTATCAAGGCACACAAACTCTTAGAATAAAAGGCACATTTTCTT
TCACATTATCATGTAACTAACGAACTGCCGATATTCATGATATATTTGTTAGCTCACTAT
AGAATAAGCATCATACGGTGGTACATACTGTGTGAAAGATTGAATTAGTAAATTTTACAT
CAAAAAACTGAAACTTCATGGGATGGATCATGAATGAATAGTTGAATACGTATTAAACAA
ACTACTGAAATTAGGGGATGGATGAATGGATCAGAAACATGGATATGCACTACTGTACGG
CGCTCATATACATATAACGTATTTTCCGATGCCAGATGGCGGGGTTGCCGGCACGTCCGC
ACGGCGCAACAGGCTGGCTGCCAGACTGCCGCGCACAGCGACGATAACGAACGGTCTGTT
AGATGTGTATAGTCCCTTTACTGTGTATCCCCATTGTATAAGGGGTTTCTTGCCTTTTAC
CACATGTATATGTACTGGCCCTTGGCCCTCTGTGAATGCCAGTTGCCCATTACTAACATG
GTATCTGATGCTTAGGTTCTCTCCCACCCCGCACGCCGCAGCTCCGTGCTCTCCTTCTCC
ACCAGCGCCGCCGCTGTGCTAGCGGCG