morexGenes - Barley RNA-seq Database

Contig contig_1559392
Source Contig contig_1559392
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1559392 (8671 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1559392

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10578	5	986 bp	MLOC_10578.5	Available	Available	None
MLOC_10579	1	1275 bp	MLOC_10579.1	Available	Available	LOC_Os06g12220.1, FRAME:-2, EVALUE:1e-116, 13106.m01334 protein HVA22, putative, expressed
MLOC_10577	1	450 bp	MLOC_10577.1	Available	Available	None
CDS Structure of MLOC_10578

CDS Structure of MLOC_10579

CDS Structure of MLOC_10577

Contig Sequence (8671 bp)

>contig_1559392 8671 assembly3_WGSMorex_rbca.fasta
ATACGAAGTTATTACGCACTCTTTCTTGCTTGGCAAGATAATATTCCCGGCATTCCGTGA
GGGAAGAAAAATAAAATGCAAAGCAAAAAATCGAAGGAAATTCAAATGCCACCTTTATTA
CAATCAAAATGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGAAATTTGG
GATGTTACACTATCACGAAAATAGCTGAACAGAGCTGGCAAGTGCCCTAATTCTGAAAAA
AAGAGGAGTTGACGAGTGCATGACGATGTGGCAAGGAAAGTAAAAAAGGAAGAACAAGAC
AAAAGAGTATAGCAGCGAGTGCTTCCATATCATGGCAACTGCTTATTCTGTCTTAAAACA
TGCAGATTTAATTCTTGTTCCCATTGTCTTTCATGACTCCCATGTGGGAAGCAGCTTTAG
AAAACTTGGGTGTACAATCAACAACGAGAACGGTGCAGACTTCCTAAACATGGTAACTGT
TTATACTGTATTCGACAAATGGAGACGGCTGAGCACATCTTCATGGCCTACCCTGCCACT
AGGCAGTCTTGTTCAGAATGCCAAGGAGTAGCATTGTATCAAATTTGGCACGACTGCAAT
CTTCCAGGCTGGAGACCTGGTGGCTAACAAGCAGGAATAGGTCACCGTAGATCAGCAGAA
AGTTCCACACCACTTTAACTTTGTGGTTTGGCAGTAGGGTAAGTAAGCCAATGATATGAC
AAACTGGCAAAACAAACAGAGAGAGCTTGCCCAGTCCATCAGAGAGGAAGGGACTCGGTG
GCACTTGGTAGGCTTTGATTGACTTTGACTGTTCTCTTCATTTTCCTATGTTAGTTCAAC
AGATGAACTATGACTATGAAGTTTATGCCAACTCGTTAGGCGAATGATTTATAATTTTAT
AGCATCATTGTCTTATATTTGGCCTTGACACAGTCTATCTTAATGAAAATATATACATAC
TGTATGTCTGTTCTTGAGCACTAACATTAATCCGAGTTACAGTTGATCATGTTTAAAACA
GAAAACCCTTCCAGGACTGATGAGGTGAATCGCATAATCATAGAACAGAAAAATATCCAA
GTACGGACATACCGTACGTTGTCCAGGTATTATCTTTGATACTTGAATAAGGTTTAGCTT
CTTCTCCATTCGCCCGGAGTACCAGATGAGCATAGTCTCATCCTAGGAACAGTAAAAAAA
TGATAAAGTCATAGACACAAGATCTACCCATGAAATGTTTTTTGACATAAAACATTAGGA
CACGGTGTTTATTCTTTTGGCATATGCAAGATCCTATGATGCAGAATGTACATGGCACTT
GCACATAATGTATGTCTCTCAGCCCGCATTATCTATCTGAGAAACAATAGATGGAGGACT
TGCATGCCAAATGTAAGAGATTTAGTCTCAGGAAAATGCTAAACACAATGGTTAGAATTT
AAAAGTAAATGGTAGAGAAACAACCAAAAATTATCTCATCTAATTGATTCGATAATACAA
CAAAATAGGCTAGCACTTTTTATTCACAGAAGAAGGTACTATGCTACGTACATTGGAAAG
CCTGAATGGGCAGAATTTTGGTTTTCCCCGCCGCCCATATTTCAACAGGTGTGTTCCTTT
CTTCAGGGTTGTTATTGCCTAGCAATTCAAAAGGTCCCCGTTGAGTGATAGAACATGAGA
AGGACCGTTCCATTATACACTATTAGAGCAAAATAGAAGTACAATTTTGAGAATAAAGCA
AAGTTAATCCTCTTTTGTTAATGTTGGTTAACATACACTGCATTCATAAGTTTGAATTGT
CTCATTAGAATGTTATTATAATTTACATGCTCTCGGTACTCTCATATAAGACATTATATG
ATTGATGCTCCCAGCTTCCCACCACCAAAATGTTGTTAAACCGATAACTTTGCAATTTGC
ATCAGGTGCTAAACCTGTAAATCACCTGCTTGTGTTTTCTGTTTTCCATGGCATAAGTTT
CAGACAATAATAGGTCAAGCCATGTTACACTGCTTGAAGGTTATTGCCAGAAAATACACA
AGTGAACATGGGTGCATACATGCGGGTTGCAAAAGGAAAGCCTTTCAAAAATATTTAAAA
ATTCTCACAAATGTGTATTAAATACTCCCTCCGTCCGGAATTTCTTGTCGCATAAATCTA
TAAAAATGTATGTATCTCGAACTAAAAAACATCTAGATACATCCATTCCTATGACAAGTA
TTTCCGGACGGAGGGAGTAGAAGTGTGAGCACTAACAAAAAAAAATCCAATACACTCACT
AAGTGCTCATACTATCAGCACAAAGTCGTAAAAGATCAAAAATTGGAATAGTTGCAAATT
CGAAAAAATGAGAATACTGAGGAAGCAGGTATTTTTCTTTTAGAAACAAGAAATGAACCG
AAATTCTGGTCCAGGTGGACTTGACTTCGATCATGGAGTTGCACATCTAAATGGGCCCGA
TAGGCTGGCTTCTTACACATCAGTTTACCCACTCCACCTAGCTGATAAACAATTACCTGT
TCGACATTCCTCTCAAAGGGATCGTTCTTCGAATAATCTGCAGCCATGCAATACCCAGAG
TCATATGCCGCAAACTGAGTTCACTCCAGCACCACATGTCTGTCGCAGCCACATAACTTC
CTCCAAACCAATACCACAAAAGGCAAACCCTGTACCAAGGGATCTGCAGAATTATAAAAT
CTGAATCACTAATTCAAACACAGCACTACAGCTAGATTCTTCATTTCTTCCCATTCTTAC
AGCATGCAAGCATATGGAAGAGATATACCATAGGAACTTTTAGGTACACACTCCAAGTAT
TCCTGACATTAGCTCCAAATCAACTGTAAACACTATGCCTACTGACATGGCATCTGGGAA
GAAAAGGTGTGGGGGTAAAGTGGGCGCACAATAGCTAAGACATTTTGCCTTCAAATAACA
TAATTCAATGAAAATAGTGGTACGCCTACAGTACTGCAACTTTTTTTGGTAAAAAACATA
ACTGGCCCTCCAGCATAACTCTGACATAGACTAGAAACAACGTGCAGCGATCCAGTCACT
CTCGGCAAGAGATTATCTCTAGATAAAGATAAGCATGTCCCCATTATCAGCATTGCACAA
GTAGATACAAGGTGTAAGAATGAATGCGGCACCCAGCACCAGCATTGCACAAGTAGATAC
AAGAGGCAAGGACGAAAGTTCCCTGAACTAATGGCTGGAACAGATTCGCATCGAGGCAAC
AATGGTGGTCCCGCGCAAGCTACCACCAAGGCCCGAAATTCACATAAATGTGAGTAAAAT
AATGGGGAGAACATCCCCAAAACGTGGACGTGGGATTCAAGGCATCAAAAATACAGCCAG
ATGGCTAAAATATAACCCTGGAACCGCTCCAGCATGAATACATTTCGACCGCCCTCGCAA
ATCGCCCCTAAACACATGGGATTACCTCAAAGCTCGGTTCCGAATCATGGTTGGATTCGA
CGGAACCTAGGCGATCCTTGTCGGCGCGGCAAGGGCGCCGGCGAGGCGATTCGGCGACCG
GATTCCTCCGGCCGGTCGGGGGCGGCGGGACGATCGGCGAGGGTTTTGCTCGACGCGTGT
GCGGTGGGCGAGAAAGACGGCCGGAGCGGCGGAGGAGAGAGAGGGGGGCAAACGAGCTCT
CGTGTCGCGCGTCGCGGAAGAAGGGCGACGGCCTCTGAAGGTAGCCGTGGGCCGGGTTCA
TGGACCAGGGGGTATGGGCCGTGGTAAGATTAGCGCGCGCACTGAGGAAACAAAACGTTT
GATTGCCTCAAAAAAAAAACGTTTGTAATCTGACAATGACTGTCTACAAGAAATTTACTG
TAATCTGTTGTTATAAAAATTCTGTCATTTTTTCCTCAAAAAAAATACTGTCATTTAAAA
AAATATGTAATATTATGTGCAGGACCAGGACATTTTGATCAAAGCTGGAATTGCTTGACA
TCATAAACGTCCATTTGAAGTTCTTAATTCTAGAAAAATCTTCAGAATGTTTAAATTAAA
ACGCACAATTACCCCGCACACAGGAAATCGCTATGTTCGAAGCAGGCGACGTCTAGTAAA
GCCACATGATAAGTTGGCCTAGCCAAATCTGTTACTAATATGCAAGACAACATTACATCA
TCTGGGAACATGTCAACGCTGGCACCTATTTACAAGAATTCAACCGTCGCATAGTTGTTC
TGGTACCAATGACGATTTGGTAGATGCGTCATGCAGTCCTCAAGCATCGTGCGTGGAAAG
CTCTTCATCAAGCAGAATCTAAGATGGCTGCATGAAAAGTAGAATTGAATCTTTGTAAGG
AAGAGCCTTCACAATTTATTACAATGCAAATCTAATTTGGCATTCCCATCGAGCCTGCAA
GTACACTCCAGGCTAACCTGATTTAGTGTCGGTAGTTTTTATCATAGAATGGATTTTCAC
CCCATGAATCTCTCTCAGCCTTGCCCATCTTTTCAGCTTCCGCCCCCTGCAAGATCGACC
GCCTCGTGCTCCTAAACTTTGAAGGCTTTGTACTTGTAGACTGAAAAGAGTTGATAAATT
AGCTGCACTAGCTAGAAGTAAGGTAAAAAAACATATAGAGCGGAAGTACAATTTATGTAA
GTATAGCAATTGAACTATTGAGCACACCGGTGCAGGAAAACATGCATGTCAATACTATGC
AATGCAAGCATTCAAAGAAGAGTGAGTCAATCAGCCAGTTATCTTACGTCACTACAGTAA
AAATGGCTTGATTCATAAACCTATCACGCAGACTGGCATGAAAGAAGGGACAATTATCAC
ATAAATGACATAAGCAGGAATATAGCAGCACTACAACAGATAAACATTTGATACTAAAGA
AATGCATTTGCAAGTATTCCAGTCGGCAACAGGAATACCTTGCTGATTAGCTTCTCAAAT
GCTTCTGGTCCATTTAGTTCAATATATTTCTCTGCGGCTGAGAGTACATCATCAGGTTTA
CTCAACTTATCCTTCCTTGGGACGTACCAGATGTTGACTATTTGGCGATTCACAAACATT
GGCCGCGCAAAATGCTCGTAAACATAAGCAGCACCATTGAAGCAAGGAAAGACTAGCCAG
CAGTTGAAGAACAGTTTTCCATAGGGCCAGAATGGAAGCCTGCAAAAAAGAATGTTAAGA
AGGTAAGAGGAATACTTAATCCTAGTATATTAAGACGCTCCAGCTTGCAGAGGTAAGAGG
AATATTTAACAAAAAGCCATCCAGTGATCAAGGGTAATTCTGGTTACAGGAAAGAAAATA
CTTATGGCAAGTTATTTCTGATACATTTAAAACGAAATGTTTTGCCTTCTAATGTAAAAA
CGCACCTATGTCTCTTTTGTTCATACCATACGAATGGCTTACAAACTATACATACACAAT
GATCACTATAGGCTATAGCAATATTTCTGTTCCCAGTTGAATATTTGTTGGCAAGGACAT
TCTTATTCTTCTGTGCCATACATGTAGATCATGAATTGAATAAAAGATGTAAAGTAGCAC
TAGAATGTGCAACATCTGTCCAGGCTGTATTTTGAACTTGAAGCATAGCAAATCTAGCCC
ATTACATCGACAATGCATTTTATTCTTTTCTTATTTAAACAAAGAGATCTATACTACCTA
CCTACGTGCTCTCAAAATTTCGTAAGTATCAAATGTTGTGTTACTGATGCCATGTAAACT
AAATTGTAAACAGTATGCATTGGAGACACTAGCAAGGAAACCAAAACTAATATAGCATAA
ATAACACAAACTACCTCGTTATTTACTTATTAACCATGATGCTTTAGTTATGTATCATTT
CCTTCCAGATTTATATAAAGTGTGAAGTCTACGGCAACCTTGCGGGCATTAGGTTACATA
GGATTAACGGCTCATATTAGTTTGATTGTAGTCTTACAATTTCTCTCGCAGGAAAGCATA
TCTGAACATCTTTTCGCCTTGTAATAATAGTATTAACGGCTCATATGTTTGATTGAAGTA
AAGAGCAGCCCGAGGCTGTTTCCAGGACTTGAACCTTAACCCGTGACCTCACGGTCACAA
GGCAACAGCTTTACCGCTGCGCCAAGGCTCCCCGTCCATTAGTTTGATTACAGTCTTATA
AAATAAATGCCGTTATTGCAGTCCTATAATTTCTCTCTTAAGAAAGGATGTCTGACCGTC
TATCCACTTCGTGGTGCATCAAATAGTTATAGGAACAAATAATGAATAACACAAGAAAAG
CATAAAAGGGAGCACAACGAATCAGGGCCAATTCTTCTCTTGGTCTTTTATTGTTACAGC
TTTCACTACTGTCAAGTACTCCCTCCGTCCCATAATGTAGGACGTTCTTTGACACTAGTG
TAGTGTCAAAAAGCGTCTTACATTACGGGACAGAGGCAGTAGAAATTATGAGGAGTGTCA
CCAACACTGAACATTTTGGGATATTAAAGGTTTAGAATTACTATAGTGTATCCGAAGAGC
CAGAAAAATGATGTTTACCATTCAAGTATCGGAGCAAAAGTGAGCTCAAACAAAGTGATA
AACGAGTACAGCACCCAGTAAGTAAGCCATTGCTGATCATCTACTTGAGATTTTGTTTCA
ATTGCTCTCACAGAGGCATATCTGCAAACGGTGTTAACAGAGAAAATGTGGAAATTACAA
CAGTGGAAGTCAGTATCGAGATGAAATGAGGTAAGTGAATCATGTAACCGAGGATAATGG
TAGTACTTACAGAGGATAAGCAAGCGAAACCAGTGGCCTGCAAAGAGGGGCAAAATTAAA
ATCAGAATTAAAAGCACTTAAGTATAGCATTTAGAATCCATCAAAGAAAGTATACCATTT
AGAAAAATATCCTAGGTCCTGAAGCTAAAGGCATCACACCAACATAGAGCCAGCTCTATC
TCTCGGAGAATACATGATAAGACGGCATTATTATTTTTAAGATGAAATATTTTTGTTCTT
AACAGTTATCGTCATCCTCTGTACTGCCATGACAACAAGTCAGACAAGCTACTGCACTAA
CAAAAAGCATTTAGCCCCGCAAGATTGTAGCAGCACATGACATCAGATCCAGTAGTTAAA
CTGAGCAGAGTTTGTAGAACACTGAAGTCAGGTTATATCCTGAACACCAACCACTCTCTT
CAAACACACCCGCAGCACGCTTCCTCCAGTAGGCACAACAACATTTGCACTGAGCATATA
AATGTATCCCGGACAGAAGAATCGGTATATCTGTCCTTAACTTCCTATTATCTCCACAGC
ACAGGGGCATACGGATCAGCAAGACAGCATTAATAAAATAGTACCTCTTAGCAACTTGTT
ACTATACGTGTTAACTGTTAGGTCGACTATATATGACATGGCAACTCCTTATAGCCAGCA
GTTGGCTATACTATTAACCATGATCTAAGTTGCACAACACAAACTGCTGCCGGCAGTCAG
CAGTCAGCAGTCAGCACCACGTGGTTGGCAATCTCTGTGGAAGCATCAATCATACAGCTA
GTCCAAGATGCAAACGTAAACAAGTAGTACTTGATGCTCTCAGAGAAAGCATCAACACAG
CACACAGAAAAAACCCCGCTTTGAAACTAGGGCTTTGAAATAGGATATTTTCCGTTGCCG
CTCTCAGAGAAAGAAAAAATATAAGGACAACAGGAAATCCTAAATTCGACACTAGGGCCT
TGAAGTAGGGTTTTTTTTTTCATCGCCACTCTCAGAGAAAGCAATAATACAAGCAAAAAG
GAAAAGAAATCCTAACTTTGGCACTAGGGCTTTGAAGCAGGGCATTTTCCAGTGCCAGCA
AGATCCACATGACCCAAACGCACTCGCTCACCCTTACCCCGAGACAGCAGACTACAAATC
GCCCACTCCAAGATTCCGGCACATCTTCGCCCACAAGCCCCAGGCGCAGCCTACCGGGCT
AACGACATGAACGGCAGATCCATGACATGAGGAAACCGCAGCAACGAGGAACCCCCCTAA
CTAATCGGCCGGTGAACCAGTCGCCGGGCGAGGACGCAACCTTGAACGAGAGCAAGAAAG
GGGAAGGGGGGGAGGGAGAGGAGCCCGTACCCGGCGAGGACGTCGAAGTTCTTGGCCAGC
ACCTTGAGGAAAGATCCGGACCCCATCTCTCTCCCGCACCCTCCTCTCCTCCACTCGCTC
TCCCCTCCTGGTTCCGCAGCAGCACCTACTCTAGTCTAGTGCGGCGCCGTCAGGGCGTGC
GCACAGCTCAGTAATGGGAGCAGATTCTCCTCCTTTGCGAGCCGTTGGTGTTTGGTACAC
GCGCTTTCCTTTTCACTCGTCTTTTCTCTAGTTTATTACTCTCTCGCCCTAGTTTTCTTT
TCTTTGCGCCAGATACTCTTTCTTCGGCCTCTTTTCTGAGACGCTTCTCGCTCCTTGCTT
ATGGCCGACCGCCCTGTGTCTGTGTGTGCCGGGACGCCGACGGCTCTTGGGTAGCGGCCA
CCGCAGAAGGTTCTAGAGTTCTATCGCATTCCTCCCTGGCTGGTAAGGTGGGCTCATTCA
GTTCGGCCCATCAATCAAAACGTGTAAATTTCAGTGCAGTTTCGGCCTGTTAAGTCTTGC
GAAAGGAGAACATGTGAAGGGGAAGCAACTACTACCTCCGTTCCTAAATATAAGTCTTTC
TAGAGTTTTCACTAATGGACTACATACGGAT