morexGenes - Barley RNA-seq Database

Contig contig_1559373
Source Contig contig_1559373
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1559373 (6784 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1559373

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10567	1	2177 bp	MLOC_10567.1	Available	Available	LOC_Os03g56800.1, FRAME:-1, EVALUE:0.0, 13103.m06205 protein CBS domain containing membrane protein, putative, expressed
MLOC_10566	1	482 bp	AK366305	Not available	Available	None
CDS Structure of MLOC_10567

CDS Structure of MLOC_10566

Contig Sequence (6784 bp)

>contig_1559373 6784 assembly3_WGSMorex_rbca.fasta
GGTCCATGAGCACGGCGCGGGGCACGAAGCGGCCCCCGCTGGCCTCGTTGTAGTAGACGT
TGATCCGCTCCAGCTGCAGGTCCGAGTCCCCCGCGTAGCGCCCCGTGCCGTCGATCCCGT
GCTCGTCGCAGATCACCTCCCAGAACTTGGCCCCGATCTGGTTCCCGCACTGCCCGCCCT
GGATGTGCAGGATCTCCCTCATCGTCGCCGCTTCGCCGGGGGTCCGGTGGTGGTTGCGGG
GGAGGGGGGTCGCTCGCTGGCTGGCTGGCCTGGGGGATTGGGGAATTCGGATTTCGAAAT
GGAGGATGGTGTTTTCCGGGCCTTTATACTCCAGCTTCGGGTTCGGGCTCGGCCGCGCCC
GGTGGTTGCGGGCCGCGGGCCAGAGGTGGGGCCCCGACCCAGTGTGTGGTGTGCTGGCGT
AGCGTGGGCTCGGGATGGCTCGGAGCGTGCCAGGCTGGCGTAACCGAAGGCGCGGGGCCC
ACGGGACGCAGCTGGGCAGTCGAGTGAGAGGATGAGCGGATGGGATCGGCCACCGACGGC
TGGGGCCGACGGAGCACCAGTTGGCCGTGGACGGTATAATCGGGTGTGGCGTAGCTGTCA
GCGGCGTGTGATCGGCGCTGGAGGCTGGGCCGGCCCGGGGGACGGATTCGTGTGGATGGG
GACGAGAGGTGCTGATGACACGGCGGGCGGTAGGGCCGGCCGTCGCCGGGGAACAGGTCA
CGGCGGAGAATCCCACAAGTCACGGCGAGGAAACTGGCTCCTCACGGCGGAGAATCCATG
CATGTTTCTCCGTTTTAGCCTACTTTCTATTTCTATATTTTCCCACGGAATATCATGAAA
GAAGCACGTCAAAGAAGAGATGAACGACTCCCTGCAAACAGGTACCTACCTAACCACCGT
CCCCGCAAAGGGGAAAACAGGCCCTGAACTGACCGTAGTTACAGGACGGTGTGCTGTGCT
TCTGCGACAAGATTAGGAGAGAATGATTAGGCGGTGGCGATTTTTATGAAGGGGATAGGG
ATGCTTCACTAGCAATCCAATCCAATCCAATCAGTCTAGTGTAGTGTAATGGACTGTATG
TAGCAGCTGCAGTCTACAGAGAGGTTGGGGGCCAATGTGTGTGTATTGGGTGTCAAAAGC
ACGTAGCTGTTGCTTGGGAGAAACGACAGAGACAAATCAACAGCACCCACCATCCTCAAC
ATGAACCTCAAGCACGCACGCCTGCCTTTCGCTTTCAGCAGCGGCGTGAAGTCGGCCAGG
CCTGATCGGGAAACGAAAGCAGCCAGCTGCATGTATGTGATCCTCCGAAGTGGCTGAGAT
CGCAAGCCAAGCTTCCTGTCGCACACGAAAAGGGGTGAAATGGCGGGTCTTCCACCCAGA
AAGTAGCAAACGGAAACATCGCCTTTTATTGTTACAGCCATTCCCATGTCCAATGTTTTC
AACCCATAGCGATGGTGGGAGATAGATGATGATGCCCATGTTACAACCATAATAGTAGTG
GTGGATCCATAGGGGAGGGACAGCCCCACGGTCTTCTCTGCAGCCAACCTTGGATGGAAC
ACACAGAAAACCAGTATGCCAGTCCTCGATTTAAAGATGGGGCTAGAATGATTTCTTCTC
GTACGACACTAGCCCGTGGATGCCTCCCTCCACTTGAGCTGCGCCGGTCCTCACCTGGCA
AGGAAGGTTGTTAGCAAGACTGAATATCAGTTCTACTGTCAAACACTGTCTATCTCTGAG
TTCCGAGATAGAGAGTAAAACACAAAAATGCGGTGAATGTAAACCTGAATCTTTGGTCAG
TATTTCACTCTTTGAAATGACAAACATGTATGCAAAGCATCAGCATAAGCAAGCATCTTC
AGGGAATTTTTTATGCACTTCTTTTGCACTGCATCTCATCCATGAGCAGCAGAGCAACAA
TCACACTTCTCATTCAGAGTAGCAAGTACGATGAGCACAATTCTACATAAACTGTAATGT
GTGATTTTGGTTCTAAGTGGGAACGAGGCCAGCTATATTGGTAAGAGAAAGGGACAGATG
AGATCCTTTTTTTTAACATGATAAGATCTGATTTGGCATTATTTTATCCAAAAAATGAGA
TAAAGGTGCCATGGTCTGAAGAAAGAAAAGGAGTGAGCAGATAAGTGCAATGATAAAAGA
ACGTTCAAACTTCCATTGCAAATCAAATTTCACTTGGGAGTGAATATGGAATAGCATAAA
CCTTAAAAGTGATTTAAGACTTGGTGATCCAAAATCCCTCTAAACAGTGAATATATGCAT
TAACTGCTGATAATGACAAAGTAAAGTTTCATGGCCTGTACACGGAACAGATTCTTGAAG
AATCAGCAGAAGGGAATATTTTTGGAAGGAGTGCTTTGGAGCGGTACCACCCCAGGAAGA
ACAACGATATTAATGAGAAGGGCACATATCCTAAGGAAAGAAAAGCACCTTAAACTGGAT
TCAAGGACAGATATTCTCATACCATGGTTATCATTTAACAGGCATGTAAACTAAAAATAG
GCTATTTTGCAAGGTAAACAATTAAACTGATTAAGCTAATATGAAGTCTGTCAACTGCAA
AATAGCGTTCATGCAGATCACTGAGTTCATGACCGTCAAGGACAACAATCTACAGAACTT
GGCAGCTACCAAATGAGTGTTGAATATTACGGATAAAGAAGGCACAGTCCCAATGTCCAC
CCCAAAACAGAACCAAGAGACACTAGGTCTCAGTGTTAGTTAATCCCCGTTCCAAAATCA
ACAATTTATGTCAGCTGCAGATATGAAAACATTGTTTTGGCCTGTAAATATATATGTCAG
CAAAAAAAGCACCTTAAACTAGATTCAGTGACAAATATTCTCATACCACAGTTATCCATT
CAGCAGGCACGTAAACTAAAAAATAGGCTATTTTGCACGCTCAACAATTAAACTAATATG
AGGTCTGTCAACTGCACAATAGCTTTCATGTAGATCATTGAGTTAATGATCGTTAACGAC
AACAATCTATAGAACTTAGCAGTTAGCAAATGAGTGTTGAACATTACGGATAAAGAGGAC
ACAGTGCCAATGCCCACCCCAAAACAAAACCAAGAGGCACTAGGTATCAATGTTAGTCAA
TCAGAAATGTTGCTCATGAACAGAACCGTGGGCTTGTGATTTATGTCAGCTGCAGATATG
AAAACATTCTTTCGGTTTGTGAATATTGTAATATGAGTAGCACCTAACAAACATGGGATT
CGTCCATTATCTAGAAAATAAATAACTGATTTACACATTTGTCAACAAATAACTATTTCT
CTAATTTTAGATATTTCGAATTAAGAATCACTCCAAATAAATAATTAAAGAGGTAAAGAG
CAGATATGTAATCCAGCAAGTAAATACCTCTAATCGAAGAGTCTCAGCTCGTAAAAGATC
ATGAGCTGACTGCAAAGAGGATGCACCAAGATCTTGGAATCCTTGTTTAACAGCTTGCAT
TGTGTACGGAATAAACCTCAGAACAGAACCTTTGTCAGCTACCGCTCCAACAACTCCCTG
GGCAACTTTAAGCTTCAGAGTATCACCAAGATACCTTGCATCGCTCCCCTTTGTCATGGC
TTCGAGGGAGCCCATGCCTCTGTATTTTTTTACTCGGTGGCCGTCCTAGCAGGGTCAGAA
TATTAGCGATAAGCAAGTAAAATTGCAAACTTCAGTTACAAGAGCATAAAAGTGCACTTA
AACATAGCACAGAAGTACACTTAAACTGACCAATATATTTAAATACTTCAATCAACTTAT
ACATCAACCCTAAATGGCATTGTCTGGTTAGACTTCATGATATTTAAGTACACTGAAGTA
CTGAACTACTAGGTGGACGTTAAGGGACCTTTTTAATTGCAGTGGACAAATTGAATGTAT
ATTTGCATGTACATGGTTGTAGTTTTCATCAAAAGTAAAGAGTTTTAGTCTCTAGTGTGG
GGATTCGTGGACTTGAGCACACATCACTCCAGGACATTCAAACTTAACCCTGTTGCAAAA
GGCTAAAATATACCAATGTATACCTTGTATTCATAGGCCCCAGGAGCCTCATGGCTGCCA
GCCAAGAAACTGCCCATCATAACAGTTGATGCCCCCAGTGACAAGGCCTTCACAATATGC
CCAGAGTATGAAATACCACCATCAGCTATAACTGGCACATTCTGATCCTTGGCATATGAT
GCAACCTTGTAAACAGCAGTGGCCTGTCAAACCAAAACAAAACAAAAACATCAAACTAGT
TCAGTCTCTATATAATGTGTTGAGATGCACCTGCAGCCATTTGAAAGCAAACATATAAAA
TTATGTTCTATTATAGACCAGCGAGGCTGCCGGCTATGTGGAAATATATGGAGCAAGCTA
GCATCCAAGTCAAATTAGATTGCAGTTCCGAACAACAGAAGAACAAAGCATTATATAAGG
TCCCATAAACAAAATGCTACTCACTTTTCAAGAATGGGAAATTAGACTATAACATCTATA
ATACATCTGATTGCTTTACATCTTTCAATACCCCAAAACTTCCTAAGAATTTAAAAAATA
ATTTTCGAACTCCAACACACCCAAAAAGTGACATATTAAGCATGAACAAGACTATTAAGT
TGTCATGCGTTCGAACAACATGGTGTACATGGCATCCAGACTCGTTTCTGTGCTCATGCA
AATGGACATGAGGCACTTTTCCTGCTAGCGCTTGCTATGTGCAATGTGTGAGTTCAGAAA
GTCGATTAGTGATAGAGCTTCAGCTCAATTATTTTTGCATGATAAATATTTATATATTTC
AGTTGTTGGGCGGCCACTTTCAAAGCCGCATACTGCAATAGCACTATAAGGTTCAGCCAC
TTACTAATTACTTGAAATGATATGTTTGATAACGATCTAAATAGGACGTTTGGCATGAAT
ATGAGAGAGACTTTGATGTATTTAAAACTTCCAGTAACATATCAGGCTTTTCCCCATCTT
GGTTCTAAAATAGGATTGTAAATTTTGGATAACTTTACGCTCTACAAACAGAAGGGGAGC
CTTGGCGCAGTGGTAAAGCTGCTGCCTTGTGACCATGAGGTCTGGAAACAGCCCCTTCCA
GAAATGTAGGGAAAGGCTGCCTACAATAGACCCAAAGTGGCCGGGCCCTTCCCCGGACCC
TGCGCAAGCGGGAGCTACATGCACCGGGCTGCCCTTTTACGCTCTACAAACAGCATGCTC
ATGCTGGTCCTACCAATTGCAGAGGATCTAAGATGATAGGCAAGATGAGCACCTATCTGA
CAGCAAACAAAATGAAGTTAACAGGCATGAAAAAAACTAAACTATCAAGGGAGCAGGAGT
TTGTGAGAAATATACCTGTCCTCTACCCACAGCACAAACCTCCTGGGTAGTGCAAATTGA
ACCAGAGCCCATTCCAACACGCAGGCCATCCACTCCAGCAGCAATCAAATTCTGTGCCTG
GCCAATTGTCACCACATTGCCTCCAATCAAATCCACCTCCGGAAACGTCTTCTTGGCATA
CTTTATCATATCAAGCTGGTAGGTGGAGTTCCCCTGCGAGCTATCGATCACAATCGCGTT
GGCCCCTGCCTGAATTAGCTGGTCTAGCCTTCGCTTGTCGTCCTCGCGGGTTCCAATAGA
GGCCGCAACTACGAACTTCCCATCTGCCCCCAGAGATGGCTTGCCTAGCTTCGGATAGCT
CCGAATGCGCTCGACGTCCTTGGAGGTGATGAGGTCGATTACCTCACCCTCCTCGGACAC
GAGAGGGGCGTAGTCCAAACCCTCGTCGGCGAGGAAGGCCGCCGCCTGCTCGAAGTCGAA
GGAGGCCGAGGCCGAGCGCGGGGCGGGGCGCATGTACTCGGATACCGGGACAGGCGCCTC
GGGCGAGGCGGCATCGGCGGCCACCGCGACGCCGAGGAGCTTGGAGAGCGAGTCCCCGCC
CTCGGTGACGAGGGCGTAGTCGTGCCCCGCGAAGTCATTGAGCGTCGGAGCGGAGGCCGG
GGAGAAGATGGGGACGGAGGAGACGAAGGGGAGGCGGCGGGACTTGGCGGCGCGGACGAT
GGAGGCCTGGGCGTGCGCCTCGGTGTTGGAGTGGACGACGGCGACGCCGCCGAGGGAGGC
CATCGCCGCGGCCATGGCGGCCTCGGAGACGGTGTCCATGGGGGAGGCGACGCAGGGGAT
GGAGAGCGGCACGCGGCGGGAGAGGCGGGTGGAGAGGTCGACCGCGTCGGCGGGGAAGTC
GATGAAGCCCGGGAGGAAGATGACGTCGTCGTAGGTGTAGGAGACGCCCTGCGAGAAGAG
GCGCGCCGCCGAGAAGCCGTCGTCGGCGCCCGCCATTTTTTGGGTGAGGTTTAGGGTTTT
CCCGGCGGCTGGGTGACTGGATGAGCTTCTCAAAAACTTCCCAACTCCAGCGCCGCGCTT
CCCCACCTGGCTTCATAGAGAGGAGATGGGCTGGGCTGGGCTGTAGGTAGGCTGGGCCAC
GTGAGGTCGTGATGTTTTTTTCCCCCTCCGATTCAGCCATAACAGAGAGCGGACCCTAAA
AAACAGGGAGATAGCTTTTAGCCTGTAGTAATCTGTGTATACAGAGAGATATTTCCCTCA
AAATAAAAAAGGTGACATGGACATGTAAACTACTCCCTTCGTTTCAAAATATAAGACTTT
TTAGAGATTCCACTATGGACTACTCCCTCCGTTTCAAAATATAAGTCTTTAAAAAGGTTT
CATTAATGGACTATATACGGATGTATATANNNATATTTTAAAGTATAGATTTACTCATTT
TGCT