Map Locations of contig_1559362 (10497 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1559362

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10561 2 1488 bp AK369624 Available Available None





CDS Structure of MLOC_10561






Contig Sequence (10497 bp)

>contig_1559362 10497 assembly3_WGSMorex_rbca.fasta
TACGAAGTTATTACGTTCCTCTACGAATGAGAGGTAGGTGAAGGGGTATATATAGGCAAC
CTCCAAAATCCAACCGTTACACCATAATTGACCNNNNNNNNNNNNNNGAAGTTACAAACT
CGGTGGTACCGAAAAGATAGGGTTTGACTGGGATCTGTCTAAGTGTAAAATCGGTATGGC
CGAGTGATAAATGTTGGTGGCACCGATTTTCCATATTTGGCTTGGGATAGATATATTTTA
TGGAAGAGTGGCTAAGTATTTTTGGTGGNNNNNNNNNNNNNNNNNNNNNNNCAATTCATC
ATAATACCTAATCCCCTTGTAATAGTATTGGATTTTGTATGAACTCAAATGTGATTTCTC
ACAAAGTGTAAAATAAAGAATTTTCTTGCTTGAAGCTTTAGCCAATCCTATAGCCAAAGC
ATCTTTGAACTTTGCTGAAATGTACTTGGATAAATTCATTAGTCTAATGATGCATATGTT
GTGATTGATTGCCAAAACCACCTTACGGAGCAATTGTGTTTTCACGGGGTGCGTTATGTT
ATGCTACTATATTATGTTACCACAAGTTTCTTCTTTCTCATTAACTACTTGTCTAAGCAT
ATTTGTCTTGAGATGTGTTATGTTACTAGTTAAGTTACTTCCACTATATGACTAGGTATG
TTCTCTTTTAGGCCCCATGTCAGTGGTGCGCTTGGGTGGACGTGGATGGGAGGACGCGGT
GTCAACATTGGCATGGACATAAGCTCACCACGAAATGTATAGCGCTAACACATCCAAATT
TCGCCTTACTTTAAAGTTCAAAAAAATGGATTCTTTCTTCTGACAGGGTTGCATAATGTG
TGTTTGTGTTGATTGCATATGGTTTAGAATTCTTTTTAGTGACAGCAATTATAACGTTTA
TCTAGAGGATGTTTGTAGTCGTCTTGTGTTGAGTGCTCGATCGTTCTTAGGCTTGTACAG
GTAAATCTTTCTTTCTAGCACAAACTTTGTGTTTCCTAAGAAAAAATAACAAAGGAGGTG
ACAAACTGAAATCAATGAACCAAAAAACAACATCTATTGTTCTGTTGCATCTTATCAAAA
TTTAAAGTAAAAATACCGGACGAAACGGCATTGTCTTCAAAGGCTAAACATACTATGGAC
CTCCCAATAGAAAATTTAGGAACTTAGAATATACATCATACAGCTTTATCGACTATAGCT
CAGCTATTACATTTCAAAATAATGAGTGCAAAGGTGGACCTACGATGAACTGCAAAACAA
AGCATAAATCGTTTCCAAAATGCAAGATATAGCTGCCCTAGAATTGTCAATCATCTTCGG
CAGCACTTGCAGCGCTTAGATCCACACTGAGGTCGACCGTCTGATAAAAGTGGCATGTTA
ATTAGAATAAGCAGCAATGTATATAAGACAAAAGTGAGATAAACAAATGTAATGTTACCC
CTGGCAGTAGATTGCTTCTTAAAACAGATTATACACGTGCATTGCTACGAGAATCGGTTG
CAATATATTTCGATGAGATTTGCTTGTATTAAATATATATATTTGGATTTATAACATATG
AACGAATTGTATTTGATTATTGTATAACTGAAAAGTGCTTATTAAACATAGTAAGCATAA
TACAATGGAAAACTTGTTTCTATGCATGTTATAGTTGCCCAGTGATGATGTAGCATGTGC
GATGATGTGGGATGCTTGCATGCTGAGATAAATATAATGGTCTGGACAACTAATAATGAA
TAAAAATCTCATGCATGTTGAGGTGGTCTTTGATGATGTGGCATGTTTCGTGAGGTGACA
TGTGTGCATGTGGAGATAAATAGTGGTGCAGATCAACTAATTAGGTATATAAAATTCCCT
AAAAAAGGTTGTTGCCTAAATTTTGTCCATCTTAGAAACTAGTAATGCCATTTCAAAAGT
CCCCCTTCCCATCTTGTGATTCGGATATGTCTGGTTTTGCACCCCTTAGCCTCATTTGGT
TGTGAGGGAAATAACACGGGACAAACAAACCAAGGGTTAGGTTTTTTTGGGTCATTGAAG
GACCATTTTTTTTCTTTTTTTGGATGGTCATTCAAGAACCTAGCTAGGGGGAGAAAACCA
CGTCGAAGACCCATTCCCAGTCATCATTTCACACAAAGTGAAGCTCCTGAACAATTGGCC
CCATGGCTGGTACAAAAAAATGAATACAAAAGAGAGAAGAAGGCCACGAGTTGGGACATG
TCATCCTCAATAATTGGCGAAGCGTGGCCTGCGGGGAGCCTGCTTCGGCATCTCCAACCT
GATGGCGCAGCTCACCGTCGCCATGCCAAGCTTGCCATAGTCTACTGCACCGGAGCTGTT
CCAGTGAAACTTCTGCCACAGTCTCCGGAATCCGACTCACCGCCCAATCTGGACACGACG
TCACGGAAAAACAGCCGGGGAAGACACAAGAGGAGGAACCCGCCCCTGGAACATAGGCTG
ATGCCGGTGGTAGCGGCCCACGGATAATCTGCTCTAGGAAGACATTGCACATGTAGACAA
CAAAGGTGCCAATCAAAGAGAGGGAGGCGAAGCAGACTTGACTGGAATGGAACATTGATG
GGTCATGGCTCGAGAGCCAAAGATGAGGAATTTTGGCTGAGTTACTGACACATGAAAATG
TTCTCAGGTAAATGATGCAGATTGGACCAATCAAAACAACATCTAGTCCGCCTCCAATTG
GACCAAATGTTCCGGATTGGGTCTTCCAAATGAAATGAGCCCTTAGTAGTGAAAATCATT
TAGGGCCGTTCAGGCCTACTTGAGCCCTCTCCCCAAAAGTTATAATTACTAGTTCCTATG
ATCTGCCCTAAAAAAAGTTCCTATGACCGCTAAAAAAAGAACTAGCTCCTATGAAATGTA
GTGCACAAGAAACCTTAGATTTGTATAGCACGACAAGGAATCATGATAGAAGTTTAGACA
AACACATTTTTAATATAATACATTGATACCATTTTTATGTAATGCGATAAAAACATCTTA
ATACTCCTTTCAATCCAAATTAATTGACGCACACTTAGTATAACTTTGTACTTAAGTTAT
AATAAGTGTGCATCAATTAGTTTGGATTGGAGGGAATAATGCAATTTTATACGTTGCTCT
AATGCAGAAATTGCATTAAGGTTTCCATAAAAAAATGTACCTTTCCGGTGATCTTTGTGT
ACAGCGAAAGAACATCCATCACGGTAGATTCAAAGTGTGTTGTGGCATCGTAACTCTGAA
CAAAATTAAATTGAGATAGATTGAAATATTCTTGAAGATGCATTTTCATTTGCTAAATAT
CGAAAGCCAGAAGATTGTTACTTCATCCATAACTTACCGTTGATATAAAACAATTGTCAG
AAGATGGGTCATTAGCAGGTTCATATCTGTCATATGTGTCGAAAAATAACTCATCAACAG
GCCCTAGAAGATCGATTCCTGGCTTCAGTTCTGCCTCTGGATTGTCACTCTCTGCTTGTG
CTGACACAAACGCTATGAACTTTCCCTTCGACGCAACATTGTGAGAGTAGGAACAGCAGA
AAACATACCTGGTATGGATATGAATTGTCTAATATCAATAATGAAGGCGATGATAAAAAA
ATAATAGTTGACATGACGAAGTAATAATAGATAAAAAGGGCAATAATGCATGGAATACTT
GCATGTCTGATCTGCGGCCAAGTTGCTTTTGCGGTATTATAATCTGTACTGAGTGAGATT
CAGCAGTATTTGGGATCGGATGGCTCATGATAGCAATTGCACGAAAGACCTTTCCAACCT
TTTTAACCTGTTATTAGAGAAGATAATTCTCATCAGTTGTAAGATTTATTCATACGCCCC
ATGTTTCCTTTGTTTAACTTTACTGTAAGATGTTTATGCACACTGACTTTGATTGGTATA
AAATTTCTGTCATAAATAATTTGTACTGTTGTTTAAATAGTATGACGGAAAGTATAGCAT
AATGTTAACGACAAGGGAGATTATCTTCGGGACAATACACCATATCTGTTTGTTCAAATA
ATGACGATGAGTGGCTTTTACCTTGTCTGGTACGTACGATGGATCACAAACAACTTTCTT
GCATTTTGCTGTCTCCCCTTCAGATGTAACTCCACGAACTTTCCCTTCATCATCAAATTC
GACCTGAAAATACATATTGTTTGACCAGTTACATATTTATGATTGAAATGACACAAGTGA
ACATAAGACATACATATTCATTGTGGTGCTTCAATGCCTTGATTGAAGTTTACACAAATT
CAAGTAGAAAAAATCTACTTTTCCATGTAATGGTTGATTGTTACACAAAATCATCTTAAT
CGATGTTGGGCTGTATGTGTGTGTGGCCCAAATGCCCATTTTAGTGTACATATGTATTCA
TATCTGCAACTAGTAATTGAAGAGAATAGAATCAAGAGAATTTCATAACGCTCTTCGTGG
TACCAGAGAACTGGCAACAATGATGGGCAAAACCTAGCCGGTGGTGGTATGGAGCCGACG
ACAAAGAGAAATTTGTCGCAGCAGCAGCAAAGGAACGGAAAGCTCAGACAGGAGCTGCGG
GTTGTGAGTACCCTAGTCATGCATGGAGCGGGTTAAGGATATGAGTGTATAGATGTGCAC
CCATTATTTGGTGAAAAAGAGCTCATATTTCTAAATTAATCCTATATATACTTAATTAGT
TAAAACACCGAGATTTAAACAATGTACACCCAAATCAAAATTTCTGCCTCCACCAATGGC
GCTAGTGGCAGCAATAGGAGGAGGATACCTGGCTGCTCGAAATAGGTGCCACGCGGTGGC
TGGTAGAGTGAGAGATCTGGACGACCTACACATGTGAGGCGCTTGGCCCGGGTCGTAAGA
GAGCTGGGTAAGCTCGTAACTTGCAGAAGAAAAGTAGCAGGGGAGGACGTCGTTTGCTCG
AATGGGAAATCACAAGTGCTGTGGGCAGCACTGAAGTTGATGTGCTGCCTGTTTGGGTGG
ATAGGTGTGGAGCTGCTTGTTGTGTACTTCAAGAAAAAGGATGCTTGCTGCTTGTGCATG
GAAGCAGAGGAAAGGTGTCCAGGAAAAAACACAGATGTGATTGCAGCAAGAAGCAGAGAA
GAAAAGTAGCGTTGTACTGAACAACGGGGGACATGATGTGCTCCTCCTTGGCCTCCTCTG
GAATCTTATGGGTGTAGATTCACACTAGGAAGAGGGACGAAATCGCCTCGGGATCAATAG
TGGAAGAGCTAACATTGAACTTGATCTTGTTGAGGGGAATGCCACCGTGAACACCAGCAG
GTAGGTGTCGCAAACCTTCAATGTGAAGGTGTGTGTAATGTAGCACAGAGCTCGGCCCTG
GTGACGTCGTCATTGACCTCCACCGACGAGGGTGGGTCCTAGTCCGGAACTACCAAGATA
GCAGCCACTTGCAGACAAGGGGTATCACCTCCGACACCATGTCGATGTAATAAAACGCGC
CATCCATCCTAAACTTCAGGACCGCGGGGCATCGCGGGAATGCCGTGCACTCACAACAAT
AGTGGTCCGCGGTGCTGTGGTTGAAGCACAATTTGCGCCTTGCGCGACTTTTCACAAGGC
ACAACCCAAGCAAGAGGGAAGACAGAGCCACCTAATATGTGCAACCTTCCTCAAGGGAGC
TCACTACTGACAGGGGTGTAGGCAAGACGACTTGTGGGCTGCCCCAAAACCACCGCCCGA
CTTCTTGGATGGCACATACAGGCCGACACGCGGCGTAGAGTACCGGGAGACCGCGCGTTA
CCCCGGTTGTCAGTCACGGGCATCGCTACAGGAAGCGTGTTGATCAGTGGAACCCCCACG
AAGCTCCCAAGGCGAATGCGCCACACTTTCTCGAGTGGAACTCGTCCCGGCCGACCCAGT
CTTCAGGACCAAAAGGGTCCTCACTGTGCCTGTCAGAGGCAACCACCGCCTTGTCTGAGC
ACTCGAAGTTGCTTCCCTCCCGAACAAGGGAGACCTGGATCCTGACCGGAGACACATCCT
CACGTTGGCAGAGCTCCTTACGGAGCTCTACTTCCCAACGAAGCACACCCAGCGATCCAG
GGAGAGGGAGGGCGAGGTACGGCTACACAGTCTGTTTATAGGTAGGATGGGGAGGAGCAA
GGTCGATGGAGGATGCCGCAATGGGGGATGGTAGGGCGGCTGGAGGTCGTCTCCATCTAG
GGAGGCAAGGCGCCTGCCATCTTCACCCTTATGGTCACCCTCCGAGCCAATTTGAGGTCC
ACTCGAAGGGGTGCATGAGCAAGAAGGGTCTGCATCGTCGAGCGAGTGGTTTGGACAGAA
TCCCACGTCGTCGGCCTCCCAAACCATCATGGCGGTGGCGTACGAACAGAGAAGGACCTG
GGGAGGGATGGGTCGATGGACTACACGCGCCGACATCCGGAAACACGAAATGTCCTAGTT
GCGCTAGTCCTATATGTATGGGCCAATGTGCTATGTATGCCACAGTTGGCCCACGATGGC
CCGGGGCAGCCCCGATGTGTCACGCGTCCCTCACAGACCTCTGCAATGACGAAGTCGGCG
GCACCGCACACGAGCGCGCCAACCTGGCGGGGCACGCACTGTCCAGCAGGCAAAAGAGCC
CCGAACGATGCAGGAAGTAGACAAGGTCCGTTAGCACCATCGCAGACGTCGGTGACCTTC
TCGCACCCCATGGGAGGGGTGGAAGAGGAGATTTGACAATTTGGCCGGAGAGCATCCCAA
GCTAATGGCTCGAGGTAAGGACCAAGGCACGACAATTGGCCGAAGTGTCGGCGCTGACTT
GTGCCTAGGAACCTTCTTGACCACCGCAAGGAAGTCGTCAAGCATCGTCAGAGTTAGAGT
CAAGGGATCAGGGACCTGCATGTCCAATAAGTCGTGTTCTTGTCCTTAGCAACGTCCGCC
GACCAGAAAGGGGGGCGGCTTGGGTGTCGGGACGACGATGCGGACACTGGGATGATGAAA
AAAATAGCTCGACTATCGAGGTGACGCCTGAGGCCATGGAGTCGGAGCTCCTATCAGCTC
CACATCGCCTGCTGCCTGAGTTCAAAATCCACCCCTCATCGAGGTGTATATTTACCTCCC
CCCCCTAGTCCAAGAGGGCGGACGGAGCTGCCTGCTCAGTGCCACACGTTGCAAGGGAGC
TCACCGATGGCGGGGGTGTAGGCATGACACCTTTCTGGCTGCCAATCTGCCAATCTCGGA
ATTACTTGGTAAGATGGTGGCTATCGACGAGTGGTCTATGTCGAGGGAGGGTCCGATGCG
TATTCAGGTGCTATGTCCGGACCCCTCCAAGCTCGGTGGCCTTGTTCTTTACGTTCTACT
TTGGCACTATGGGGAGGCAGATCTCCGTCGACGTAGATGTTGGAATCATCATGATCAACT
ATGTGAGTACACGGAAAAAGTTTGCTAATTTTGTGACAAAGGGTTTTCTTAATGATTGTA
ATCGAGTTTGTGTCAAGATGGGAATGATAGATATCTATCATTCATCTTGAGGAAAGTGTT
GGACAATAACTGGGCTTGAGCCTTCATACTTCTCCTCGCCCATGTGGCCCATTGTTTCTA
GTTGGTGGAAAAAGTATATAATATTGCGTGTGTGACGGGGAGGGGGGTTGTTACTGTATA
ATTTCACCACAAGTTCTAGATTTTTCCTAGGTCAAACTTGTTGAGATCTACAACATCAAA
TATACAGAGTACGAAAACATATTTTATGAAGATTCTATTGAAACTAATTTGATGTTTGAG
ATGTTAGTATATTTTTATATAGACTTGCTCAAAGATACATACGTTTGACATAGGACAAAA
CTAGAACTTCGATTAATTAGAGACCCTGGAGTACTGTACAAGTGCTTGAACGGACAAGAA
CTTTGTTTGGTTCTGCCAATAATATGTTATCTTACACACTTGGCAGTGCCATCTGGTCGG
TTACAATATTTCTGTTCTCAAGCTATAAACATCATTATTCCTTTGTTGTGCACCCTAAAA
CCCTAACATTTAGTTTTATTTTGTACCATATTCATACAATATTTGGTGTAACCATCACCA
TGCGCAAATCACCAGAGAAATAATATTTGAAATGCTACTTTTGTAACATATTATTGTACC
TTGCACTCTGGCTTATTCAACATGTACGTCCCGCCGTATACCGCACTAAGCCGTGCGAAA
CCCTGTACCAAACAAAAGCAATTACAAAATCAAATACTTTGGACATACATAATTGCTGGA
ATCAGGCAAAAAAAAGAGAGTAAATAAAAGCATTGACCTGTGGCAGCTCCCCTAAACCAT
AGAGAGGATAAATATATGGCGAGCCTCCTTGAAAACGAGCCACTGATTCTGCATAAAGCT
GCACAGATAAATGAAGTTTAGGTAACAAGCAATATACTGCGAGAAACAAAGAGATGACCT
AATAACACCATAAAGTAATATATACAGTGAAACATTAACATGGAGTATATCGTACTAACA
TCAAATCTAGAATTCTCATTATTATTATTAGGCTAGACGTGACTTAGGTGGCTGACATAT
GTTCTATAGTGGTGATTCTCTACGACTACTTACGTGACTAGCATGGTGCTCCCTTGCTTG
TAGGCATCCCAGTTTGGCATTCTTTCAAGTTTGTATTCCCTACGTTCTATAATTCTTGGT
TTTAGTTCAACTAAAACCACGAAAAGAATTATGAAATGGAGGGAGTATGCACTATAGTGT
CATCTTATCTGGGCACGAATTTGGAAGCTCATTATATTGTCAGAGCCAATTTCCAGCTAA
GCTGGTTTCAAATTCTCATCAGCAGTTCAAATGCACCAAAATTACGAGTTTTGTATCTGA
TATTCATATTAATTTTAGAAGGTATCTAAGATATCAATGAATTCTTTTGCTGTCAGAAAA
ACTCGCCTTCATCCGCTTCACAATCTCTATTGCAGGTTCTGAAAGATAACTATCGTCCTT
ATGAAGAGCAACTGCGTGACCAATGAAGTCTATTGTATTATCATCCAAACCGTATTTTCT
GAAACACAAAATTGCAACAGATGAGTCGCGTTAAATTAAATCATCATCAACAGTTAGCAC
TTGAGATTCCGAAGACATATAAAATGGTTCTGAATAGATATCAGAACAGTACCTTTAAAT
ATGAGCAATGGAAATTAGATTATCTTATGCGAACATTAATGTGTCAGTTTATAAGTTCTA
AACCAAGTTGTCCTAATTTTGTCCCTCTCTACATAGAGATCTGCAGAAAAAACAATGACC
TAACAATAAAATTATAGAAGATATCAGAACTTCAAACACAATTTATATTCAAAACATGAT
GTCTTCAGGGATGTTTTTTCCTGTGGCAATTATAACCGAGGCAACAATCGAGTCATATCA
TCTGGTATTGTTCTTCAATTAAAATATAGATGGCAGCAGTAAAGATGGGTACACACGAGA
TAAGTTGTTTACTGGTCATCTTTGTAAGGTCCAGCCCCTTGTGAGTACTTGGATCATTTT
CCTTGTAATCTTGAACATAAAGGAAGAATTTCCCTGCTCTTCGCTTCTCAAATAATCCCA
TCAATGGAGACTTGAGAGCTTCCATATCAGTAGAGGGGACTTTGTGGATCTGGGAAAAGA
TAGTGGATATAGATTTTTTTTTAGATGTCATGTATTGATTAATAAATATGATGGAGTGTG
TGTGCATAGGAAAGAGCACTGAACCTTTCCCTTGTTGAAAACGTAGCTTCCATCCACAGC
TTTAAAGGATAAATACTTGGTAACACCAGTATGAATCAGTACACGGACCAAAGCACCATT
TGCCATCATAAACTAGCCAAAATGACACTGTTGTGTTAGTAAGGAGGTGAGGTCACAACC
ATCGTTTATTGGTTCAAAAGAGCAATATCAATATATTATTGAAGTTATCTATCATTACTG
ATATAAGTGAACTGTACTGCATTATCTTTCGTTTAAACAAGGAATGCCCAGCCAAATGAT
GTCCAGTACATAGTACATACTGGATATCTCTAACTGACATGCTGAAACACATTGTACGTT
AATTTGTACTCCCTCTGTAAATTAATACAAGACGTTTTAGATCACTAAAATAGTGATCTA
AAACATCTTATATTAGCTAGTTTACATAGATATATAGTATTCACTTATCATTTTTGCAGG
ATGTAGTTGCATCCCCACTGTTCCTGGAGTTTCCAAAAGGAGCTACAGAGAGTGGAATTG
GAACAGACCTTTGGAACCATGTCTACATTGTAGTCTCTGCTGGCTCCTATATTTGCAGGG
GGTGTCCCGTCACCCTTGAACCTTTTCCACAGCTGTGAATGAGAGCATAATTTGGAAAAT
CGTTTGAAAGAATACCATGATCACAAAACATATGTACTCCCTCCGTTCCTAAANNNNNNN
NNNNNNNNAGATTGCACTATAAACTACATACAAATGTACATAGACATATTTTAGANNNTA
GATTCATTCATTTTGCTCCATATATAGTCTCCTATTAGAATCTCTAAAAGGTCTTAT