morexGenes - Barley RNA-seq Database

Contig contig_1559316
Source Contig contig_1559316
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1559316 (7374 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1559316

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10539	6	3194 bp	MLOC_10539.3	Available	Available	LOC_Os08g30770.1, FRAME:-1, EVALUE:0.0, 13108.m03185 protein ABC transporter, ATP-binding protein, putative, expressed
CDS Structure of MLOC_10539

Contig Sequence (7374 bp)

>contig_1559316 7374 assembly3_WGSMorex_rbca.fasta
TTTGGCCCCGGCCCAGAGGCAGGCCGGGACTAAAGGGTCCCGGCCAATGGCCCGTTTTTC
ACTAGTGACTATTTTGATATTCCAATATTTTCAGTGGAGACCGATAAATGTTGAACATTG
TTTAATGTTAAGGTTTTTGGCAATACAATGATAGCAACCTCTCATGCATCATCGTCTCCT
TTGCCATTGCCTTGCCTACTTCTCCATGTCTCTCAGGCTTTAGGCCTACCTCACAGTATC
AAGTAGAAGTGGAAAATGGATATTTGGGTTACTACTATATGAAATCACTATGTAAATGTC
GGACTTTACAGACATCAGTCAAATTCAAAAATTAACACTGCAGAGTTGTCGATTGGATCA
CAGACTATCCTGGTTTTTCTAGTCTTTGTATCCAAGTTGTATCAAATATCCAATCCATTT
CCACTCTTCATCCCAATTAATAGAGGGGAGCAATTGCTGGTGTGCACTTGGCATGGCAAT
TGCTGCTCGTCAAAATATATTTTAAGGCCAGCGACATGGAATACTTCGCAAAAATGTCTG
CATAATTTAAAAGGTAAAGTAAGGTAGAGAGCCTTCATATTAAATGTTTTTTTAATCTCC
CATTCCACCACTCAGCTATCATTTTCTAAAGAGAAAAATATCTGAGAACCCATATGCACA
AATTTGACATTAACATTGACTCGGCCAAATTAACACCAATGTAGCATATTCAACAATTTA
TTGGGATATGGGTAGAACCAAATTAACGCCAGTGCTCTAGACAAACAGTGTGGCATCTGA
TATGTACAAACTTAAACAGTATATGCCAATAAATTAATGACAGATATGTAGGGTTTGTCC
TCCTGGGCTGATTAAATGTAGTCAAAACATATACATCTCGAGGTTAAATTGACTTATTTT
TACTAAAATTACAAACTATAGACAAACAATATTCTCTACCAAAATTTCACCTTCAATTTC
TACCGTTAACTGCAAAATTGTTGATACAGTCAATGCTAAACTGTTGGAATTGTCAAGAAA
AAAGTGAACAACCTGCCATTAAAAAACAAATAATCTAGAAAAAAAACTCCACTATTTAGA
TATAAAACATTTACAACAAATGTAAGGGCCGGGAACTTGTTTTTTGTAGAAATAGAAAAT
CAAAAACATATAATAATGACAAGGCAGTTATGTGGTAGTATGTGGCGGGTATGTGACATA
TACCTCAACCAAAAGGACCTGCAAAGAAACCTATATATGAACATGTTACGTTGTATTTGC
CAAGTTCACAAGTTCATATACACTAATTTACAACTCAAGTGTCATAATAAACAAAAGTTA
TAGCGAGTTCAAACAAGAGTTATACACCATACATTTATCGACAAATGAATAAAACAATAA
CCTATAAATGAGATATACTAGTTACGCATTCACACTAAAGGCTTGTGCTCCCTGGGCAAC
CTTGATGAAGACATCTTCCAAGGTAGTGTCAGCGAGGCCCCAAGCGTGTATGCTAAAACG
GCATTTTGCACTCTCAACCTCATGGAAAACACTTGCTATCTTCACGTCCTGCTTTGGCAG
CTCAAATTTCTGTGTTCCAGATATGTGATATATCCTGTTAGCATTTGGCGACAAACGGTG
AACCAGATGTTCAACCTCCTGCTCATGTTCCGGAGATGTTGTGATTGTTAGCACATAGGT
ACCCCCATATCTCGCTTTCAGCTGATAACATTGCAGCAGAAATTATGGTAAGTGTTCCTA
CTCTACAAAAATTGTACTTATGTGTGTTATACTAGTGAATAAATAATCTACCTCTTTTGC
ATTTCCAATGCATTGAAAACCCCCATCAACAAAAATACCAAGTCTATCACATAGTACCTC
CGCCTCTTCCATTGAATGTGCTGTAAAAAAACATGATAATTCACAATGTATCTATGGAAG
CAATCAAGAGAAGATTATGAAAGATGAATACTTGTAAGAATGATGGCACGGTTTTTCTTC
GCTTCCTTCACAACACTCCACAGGCTATTTCTTGATGCTGGATCTAGTCCAGTGCTTGGC
TCATCCATGAAAACAACCTAAAATTATGTATACAAATTTCAATTGCAAGTTCCATAATAT
TTTCTGCACCTGAAAACATAACAGGAATGAGGTTAGTACCTTCGGGTCTCCAATTAAGGA
GATTGCAACACTAAGCCTCCGTTTCATGCCCCCACTGTACTTCCCCACTTGCTTATCACC
AACACCGCCATGGAATAGGTTAACACTCTTCAGAGAATCTTCAGTTGCCTGACAGCACAA
CAGTTTTTGACATGTCAAATATTGATGCATTCATGCATATTATGATATATGGAATTGCAG
GAATGATGTGGTTTTTAACAGATGTATCAATATACAATTTCTGCAGGTACTTCACAGAGC
GGCGGCCTTGATTCGTACGTGGTCATTACTCACTCCTGCGGACATCAGAGAGCCTTTGGT
CACTGGGTCTACCCGATGAGAGATAGTAGCGTGGGATATCTTCAACCGGTTTGGATGACA
GTCCAGTAATAGGATAGATGGATAGGCATCTAGTTCTATTTTGGCCGGTTGTGGCTACTT
TTACTTTTTATCTCAGATTTTTTGTACTACTGGAGACTATTTGAACCATTTCACTATTTG
CAATAAAGGGGCCGTATGCATCGTGCTGATGCAGAGGCCGGAGGTACCCTCCTTTTCTAA
AAAAAATGCATATTATGATATGCACTGTTGCTGCATGGCAAAAAGTGAATAATAACAGAT
ACCGGTGCAGACATACAAAAATGCAGAACTGTACCTTCAACAGTTCAGCACCTTTAAGAT
TTTTTAGTCTTCCATAAAACAACAGATGCTCTTTTCCCGTCAATGTTTCCCAAAGTAAGC
TGCATTTGAAAAAGCATTAGCATTCTGAAAACATAGTGTGCACAGAGAACTATATAAAAA
AAACATCAGATTAATTTAAGATCAAGGTCGTACTCATGTTGTGGGCAGACACCCATATTT
GTATATATTTCATTCATATCAGTTCGTATATCCATTCCATGGACATAAGCAGTGCCAGAC
GTAGGTGGAACGAGGCCAATCATCTGTGGATGAAAAATGGAAAATATCCGCAATGAGTGA
ATCTGTTGGTCAAATTTGTGAAAAACTGAAACACTACTTGTCTTGCTACCATACCATACT
GATGAAGGATGTTTTCCCCGCCCCATTCGGGCCAAGCATTCCAAAACATTGGCCTTTCGG
GAGGGCAAGAGACAACCCACGAACTGCAAGCTTGTCAGGATTTCTATCTCTTCCGCGGTA
AACCTTCTTTAGGTTATCACATATAATAGCATAGTTTGCATTGGGTTCCAGCAGAAGCTG
CTCAACAGCTTCTCTCTGAACATAATAATAAATAGATTATCCATAAGCACATATTGCTGG
CAGGGTCTTCTGCTATAAACAATGAATAGGTATATTTCAGAAATATGCAAGGGAGTAACC
TACTTCCTGAGTTGCGTCGGGGTTCTCCATTTCAACTATTACTTTAGATCCTATCCGACC
GAAGCTATACATCCGGAATGATGCAGTTCGCTTCTTAAAGAATTTCAACAAGATTAACAG
CCTTTTTCGGAGTCCACCATCCAGTGATGAGACTTGATCCAAATGAAATGCCAATGTGAG
AAGTATTGCCCATTCAACGACCATGATAATCAATACAGTACGCATTCCATTGACGGGGTC
ACTCAAATTAGTCCACGTCATACCGTCAGTTCCCATTGTAGTTCCAATGAATGCATATTG
ACCAAACTCGTATAAACCTCGGTAAAGTGAAAATCCAGGGATAATCTCCATTACCACTAA
CCAACCCTCTTTAATTATGGGGAACAATAAACTTGTCAAGCATTTGATCTAAAATGAGTT
AGTTGTAAAACATACATAAATAAGAAAGTAACTTACCCGGGAAACTATTGTCCTGGATAA
AAAATCGCAGAAGAAATGCCCCTAGTAAACCAGAACCAAATACATACATGTAACCAACAA
CTGCAGCACCATAATTTCAGAACAGTTACATACACATATTATAAGCACAGCTTTCTCGCT
TTGGACATAACAAATCTTAGTGACGGACCTGTGGCTATTTTGACAGAAGAAAAGAAAGAC
GCCGTGAAAAATGCGAGTGCAATCTGCAGATTTATGTAGATGAAGTAGAAAACAATCTGA
ACGCTGTAGTCATTTGTTGTAAAGAAACCCAGACCTGTACAGAATAGAACCATTTCAAGG
AGACTAATTCATGTAAATACATACAATTTGTTGATGATTTCCGAAATATTTACCTATCAA
GGAGCCAAAAGTGACAAATAGTATCATATATAGAGCTGATAGAGCAAAGAAGTAAGTATA
AGTTATCATCCAATAAGGGCCGGACTTCAAACCATGCATCTTCATCATAATTTTCAGCTT
TTGTTGCTTCTCATACACGAGATATGTTAGTATAACCTGTAAAAAGTATTGTACCAACTC
ATCAGCTCATCCATTTTTATGAATTTGCTTACAAAAGGTTGTGCCTCATACTCACTGGAA
AGAGTAGCTCAACGATCCATGTGAAGAATAGCGCACCAAGAAGAGAAGACAGGTCAAGTT
TAAGTTCTGTTCCTACTTTAGGCATATCTTTAACATATTCAAGCAGCATTCCTGCTCCAG
TTCCTCTGAGAAATTTGATGTATGCGTTGGACGCCTATATAAAAGACAGTACACCTTGTA
ATAATAGTTGTTGAAATGCAAATGAAAGTCATTTAACAGCAAGTTGTGCAGTAGTTAAAA
GCACATACCATGTTAACCAAGCGTGGTACTCGGACTAATGCCATTTCAAAAACTCCACCG
TTGTCATTATACGTAGAGTTGAACCAAATACTAATGTCAAGACTATCTTTATTTGTACTC
AAGAAGTCGTAGCCTGTGAATAAGAACATGTTATACACCGATTAAAAATAAATCAATACT
GAAAATTCACTGAACAAGATCGTGCATACCTGCAGCAAATTCATTCGCCTTCCCTCCTCC
ATTCTCTCTTTTCTGTCTATAACCCTTAAATAGTTCGTCATTGATTACTGATGCGTTTTC
ACGCCATAAAGACAAACCTTGAATGCAGTCTACATCTGGACATCCAAAAGAAAATTGCGA
ATGGAAATATTAGTAGGTAATTAGGTATACTAAACATATAAAAACCAGCATCCTGTATGT
TGCATATTCTTGTAAAGCAAAAGCACAAAATGAAAACTCCGATAGCTAAATATCAATGTG
TCAAAGATTTCAGTAACAGCAGTTAAAATTTGCTGCTAACATATACTGTATTAACGTACA
TCCTCTTGTTTCAAAGAAATAGTTCAAACTCCAGTTCCATCTAATTATTTGATGAGACCT
GCTCAGCTGATTTGTTCCTTCCTTGAGGTTTTGAAGGTCCAGTATTATAAATGTGATCAA
GCATGCTATTTTTTGAGGAAGTAATTTTTTTTTGGAACGTCAAGCATGCTATTGTCAAGA
CAATTAAAGCTTACAAACATGAAGTTGTAATAATTTTGCCTTATTCTAAATGCAAAGCCG
GAGCTCCTGCCCTTTGAGGAGGTTCCCTAAAAAAAGTAATAATCCTTTTCGATGTTGAGA
TCACAAAGTGGTAAGTCTCCCCAAATGCTCATGGTTTTCTCCTTGCTTCATCGCAATACA
TCGTCAATGCATTGAGGATTTCAACAAAGGAGGAATGCTACTTACTGAGTTTAAGGAGTT
TCGTCCCAGCATTGAGTGAAACTGTTTGCTTGAAATTGGACCTGCACCGGGGTTGAACAA
TATACAGAGTATTCCCTGGAATAAACGCTGGCTCCAAAAACTGTCTAAACGCCGCCGGCG
CATCAGAGCCCTGAGACAAACAGATCCAGCAAAGAATAAACTCTGCACATTAACAACTGC
ATAATCTAGCTAGGTTTGCAAATAGGTTTTGAAGAAACTCACAGGAACAATGTTGGAGAG
AGTATGTAAATAGTCGGAGAAATTCAAAGGCGAAAACAGAGCAGGGAAGAGTTGACCCGA
AAGACCTGCCATTCGAAAGCACGGACATTCAGATGCACAAACATGTCATCTCCTATATTA
TAGCTAGCTAATGTACCATGATATAGAGATCATACATACGTTGGGCGAGCGAGCGGTTGC
CGCCGGTGACGAGGAAAGCGGCGGGGCAAGAGCGGGCGTCCCGGCAAGCCGGGCCAGGCA
AACCGTCGAACGGCTGGGAGGCGGTCCCGACGGCCCTGGACTCCGGCGGGGGCAGCTGGA
GCACGGCCGGCCAATGCGGCGGGCTGGGGATCGGGCAGGTGGCGACCTGGTCCTGCGTGG
AGTACTGCACGCCGCACTCGGTCCTCCGGCAGCTCCCGTCGGCGGCCCTGGCCGCGTCGA
CGCAGGCGCAGCCGCAGCGGTACTTTGGCTGGCCGATCTCGCGGTTGATGACGGCCTGCA
TCACCACCAGCAGCACGCAGAGGAGGGTCGGGAAGACGGTGATGCAGACGTTCGTCTTCA
CGTTCCGCTTCTGCAGCACAGGCAGAGCAGCAAACGGGACGGCCGGTCAAATGTCGCTCG
TGTCCTCGCCATGGGAAGGGAGCGCATTGCCGTTGATGGAATGGATACGCAGCCGCGTCG
ACGACGGCGGCGAGCAGAGCAAGAAACAGAGCAAGAAGAAGAAGAAGAAAGAAAGAAAGA
AAGAGGGCGGAGAGAATCTCGTGGACCGACCGACGGACGTACCTGGAAGCAGAGGTTCTT
GCGGAGGAGAGCGTTGGCCTGCGTGGCGAAGCCGGCGGGGCCCCTCGAGCCCTCCATTGC
AGGCCGGAGACGACGGAGCTGGGCTGGCAAGTTGCAACTGCTCTTTGGCCGTCTTCTTCC
GCCTCCCGCCAACTCTGCTTCACGATGTGTGATTGCAGGAGCTAAAGTCGTCGGGCATTC
TTTGACTTGCCAAGTTGTTCACAACCCACGTGGGCGCCATCTACTTATACCGAGTATTCG
ACCCACAAAACGTGTTTGTAGTTCGCAGAAAAACGCTTTTACGGACCGACGCGAATGGCC
GCGGATGCAGACCTCGCATAACGGATCCGTAAAAAAGCATATTTATGGAATATGTTTTTT
TAAGGATCGGTTTTGCGGGATCTGATCTGGCGCAGCTCCTCCCGGCGGCCGGCAAAAGCC
AAATCCGACTGCCCCGCGATGAAGGTCTGCAGATCCGCAAATTCGGCAACCCACCAGCGT
AGGGGCCAGGGGAGGCCTCGTGCGTGTGGCGGCCTTTCGGCGAGCTCCTGCCGGCTGCTT
TCGCCGGAATCTTGGGCGGCGGGGTGGCGGCGGCGCGAGGGGGGAGAGGGGAGG