morexGenes - Barley RNA-seq Database

Contig contig_1559260
Source Contig contig_1559260
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1559260 (8856 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1559260

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10511	4	1927 bp	MLOC_10511.4	Available	Available	LOC_Os09g36140.1, FRAME:+2, EVALUE:5e-57, 13109.m03551 protein RNA recognition motif 2 domain containing protein, expressed
CDS Structure of MLOC_10511

Contig Sequence (8856 bp)

>contig_1559260 8856 assembly3_WGSMorex_rbca.fasta
TATAAGGTTTTCCCTAGTAGTGATTGGCCTGGGTGTTCAAGGTTCCTCCATAAGATTCCT
TTTGTGGCGTGCTCTGTGGAAGGGTGTGAGGTGGCCTAGGTGGTCATGGTTACTCCGGAA
ACTTCCTTGCTTGTGGTGTTCTCTGGAGAATTTTGTAAAGGTGTGGTGGTCGCCTTCAAG
ACCAACCCCGAGTGAATCGAAGCTCATCCATTGGAGATGACTCGAAAGTGAGAATACAGT
GAGCCACTTGGTGGCACTCCAGAGCCTTGGCTTCGACATCGCTCCAATGAAGATTAGCAC
TCTCATGAGTGTGAACTTCGGGATAAATATGCGTCCCTGACTCAGTTGTGGTTATCTCAT
TCGCACACCTTTTACTTTCACAATTTCATACTTGCTCATATTGATATATCTTGTGCTAGT
TAGAATTGCTTAGTTGCTCCTATATTTCCATATCTTGTGATATTGTTTGTGCTTGCTACT
TTCCCTAAGTGCCTATCTTGTTTAGCATAGGTTGTTGGTGCACTTAGTTGAGCCTAGTAT
GTTTAGGATTTGTGTTGTTCAATTCCGCATTAGGATAAAGCCAAACCCGTAAAAGTTTCA
AAGCGCCTATTTACCCCCCTCTAGTTGTCATCTCGGTCATTTCAAGAGGCCTCCAAGTTT
CTCGTGCAACAAAGAAGCTCGACCCCGCGTTGCTTGAGGGTACACCACTCCTAGGAGGAG
AGGCCACCGTTTTCCGATCATCCCCCATGATCAACCTCACAGGCCACTGTGACCGGCGTT
GTTGCCATCCTTCAGCACCGGCAACACTTGTGCATCGCCCTCGCAATCGCTAGATCCCCT
TCACACGGAAGCATTGCTTCCTTTGGTAGGGGAGCAAAGAGATTAGTAGCTAGGTAATTG
TTCCTATGTTAAAAGTGCATACACAGAAGCAAACCAGCCTGTGGTTGGATGATTAGAGGG
ACAGTGGTATCCCCAGCCCATCAGGGTTCAAATCCTACGTTCAGATATGCATATGTGCTT
ATTTGTAGAGGATAGACACTTAATTAGGCACCCTTCTTATAGAAATAAGCACCAGTGCTT
AAAAAAACTTGTTTTTATTTTACTAAACACCTCCATAAGCACCATTCGTTGTACAGCCTT
TTTTGCTCTGATTTGATGTGGCCGGAGCTGAATCTTTCCATTCTAACCCGATACCTATAT
ATCACTTATTGGGCTCTATCAATACGAACATAACATATCATTTTGTAAATGTCATTCTCA
CATATATCATCATATATGTACCGAAATGTCGACCGATATTTGCCCCAGCATGCCCATTCA
TATGGACAAGTACATCGAACACAATTCTGTATCAGAACGCAGGGAGGAAAGATTGTGTAT
TTACAACATCATGGTGTTGTCCAAGTCATGCATAAACGCAAATATAACGCATTGTTTTAA
ATCTTGGAGCAAGAATTTTGTGAATCTGTCTCAAACCGCTTCTCAATTAACAAGTTGATA
AACTAGCTAGGAATATAAATTTATTATGCTGAGAATTGACATCATACATTTTATTTTACC
AGAAAAAATGCATTTCTGTACAAAAAATATGAAGAAGAAAAAACAGATGTGTTTTCTCCA
ATGTATCTGACGATAACCTTAGCTTGCTCCAGAGATAACCGAGGGCAGCTATGCCTAAAA
GTTACTCCCTCTGTAAAAAAAATATAAGAACGTTTAGATCTGAACGCTCTTATACTATAC
TTCCTCCGTTTCAAAATAACTGTCTCAAGCTTAGTATAAATTTATATTAAAACTAATACA
AAGTTAAGACACTTATTTTAAGACGAAGGGAGTATTTGTTTACGGAGGGGATACTTTATT
ATTCCAACAATCAAAGGGCAGAGACTTCGGGCAGAAAAACAGCACATTGGTGCTCGGGGA
GCCAAAAAAACTCTCCCCACCATTAACCTTTTCTTTCAGCGCCATCAACATCACACATCG
CAACTGGATGCCAAATCTTCAAAAACATACACGGGCGGATAACATACGGTTAACATGCGA
ACAGATGCACAAACCAATCTAAGAAAGTTCAGGGCAGATGAGTACAGTTAGTGACAACTC
AAAGGAAATCGGATGGCAGAACCACCAAGCATTGCTGCTACCTAGGGAAGACAAATGAAG
CCAACATCTCCAAGGTAGGATACAGTCATACAGACACTAGAAGATACTCCTGCAGCCCCA
AAAGAACCATCTAACTTGATCATCTTGGGTAACCAAGCACACTAAGCACCTACCCTAAGG
TGAGTAGGCCTCCATCCTCGCGACGAAGCAAAGACATCACTAGCCAGTAGCCACCAGCTC
AAACAGTTTTGTTCCCCACTGCACCAGGTTTCCATTTGCCTCCTCTTTCTGCAAGAGAGG
CCAAAAATGTATCCAAGAGCCAGTTAGCTTAATCGTAGAAAAAGGATCCATCAATCTAAT
GATCTGGAAGCAAGAATTATAACTCCACAATGCCCAAAGCACTGCAGAAACACAGACCAA
TACTAACTTCCTTGTATTTCCTTTGAAATGATCAACGCATGAGGTCCAGATATGTGCAAC
CTCCATGAGCAAACAAACAATTTTTAATAAGAAGAAACTAAGAGTACATTTCACTAGCAT
AATACAATATCATAGTAGTAGGCTTCTAGAATAAAATTTAGTTGGGCTGCAAGAATAAGC
TGGATAGGTGGCAGCTTATTTTGGCAGCCACCCATAAACCCTAAAAGAACTGGCCCTAAA
CCTCATTATAAGTCAGGCCACGACTGCTTACCAGTCACACAAAGTTCAGAAAAAAGTTGA
GATTATAACTTCAAGGAAACATACGTGCAGCACGCGGCGTGGGGTGAGCAGATTGATCAG
CGGGACGGTGGACCACCGTGCGGCCAATTACACGCTCCACCGTCGGCCGAAGGCCGTCCC
GCGGCGGGCCGAAGCGCACTGGCAGGAAGTCCTTGTTACCGCATGGGAACTTGGAGCTGG
AGAAGTGCGCTGACAAAGCATCCACCCCCTGCAAGCAGGCAAACAGTTGTTGGAGTTATG
GTGTTGGCCGGAGGCGAAGATGTGGAGTCGGCCGGCGATGGGTGCGTGCGTACCTGGATG
TCCGCGTGCACAACCTCGCATACCTTCCGAGAGCCCGCCAGCGCCCAGCGGTGCCCGTGG
AGAAAAGCATGGAGCCGCCGCGCTGCAGTCGCCGTCGTCATGTTGACGAACGCATAGCCC
TTGTTGTACTTCGTCCTGCGCAAAGACAAACACAACAAACAAGCTTTGGATCAGAGAAAA
CAAAAGCCGTAGATGCGCAATAACACAACTATGGTAAAATGTTAGGGTCCGCCTATAAAA
CAGCGGCCGATTCTTCAAGACGTTGGATAGAAATGCAACGGCTACTGCTTCATCTTCCTC
CCGGCCCGATCTTCTTTCCGCCCCAGCCCCGACCTCTCCTCTGGCAGCATCATGCAGTCC
CCGTCACCTGTGAGGCCCTCACTCGCCGGCGAAGCTGCTGCGTCCCATCTCGAGCTCGAC
GACTATCTAATTCGAGCGGCATTGTAAATGAAAATGCCCCCCACCCGCACCTGCGACACG
GCGGCCAGCCACGTCACTCATATCTTGGCCTTGGAGGGCTGCTCTCTATCTCTCTCTCTC
TCTCCCGCTCTACTCTCCCGAAGAATTGACTAACCTGAATTTCATTTTCAGGCAACTGAG
ACCTCCCGCTCTACTCTCCCAAAGAATCGACTAGGCTGAATTCCATTTTCAGTCAACTGA
GGCCTTGGAGCTTCGTGCTCTCTCTCTCTCCCTCCCTCCCTCTCTACTCTCCCAAAGAAT
CAACTAGGCTAAAATTAGTTTTCAGGCAACTGAGAATTAGCAAATCCGGAAATGCAAATG
CTGGTACTACCTGAAGTCTATTGGGATGTAGAGGAAGTCATACTCCGATCTCACGAACTT
GCCACCCCCAACGACACGCCATTCAGGATTGTCGTTCTCATGGACGCAATGCTGGTCCAG
AATCGCCATGAACCTCCGCTTCCTGCGCACATAGCAAGAATCCACAGAGTATTTCAGCAA
AAAGAAGAGGGGGAAATGGCTGGCACTGGCAGCAGAGAATAGCAGCCCGCTAACACGAAT
CCGTTGGGGATATTGCAGATCATCAGAGAAGTCTTCTCGCTGGTGGGGTCGAAGGCCCGT
TTCCCCCCGACCACGAGGGGCGGAGGCGAAGGCAGCGCCGAGGCGGGCGTCGGCCTCCTC
CAGGGCGTGAGGACGGAACAAGGGGAGAGGTTATCCTCCGACTCCACCTCCCGGAACTCG
TCGATCTCCGTGATGCCGCAACGCGGCGGCACTGGCGGCGAGGGCACGTTCGCCCATGGG
AAGGGCGGGAACGCGGGCGCCCCCGCGGCGTCGGCGCAGCAGCAGACGGGGGCGAGACCG
CCGGCGGGCAACCCGAAGGCCAGCGGCAGCTCGGGCGGCGGGAGGAGGCAGCTGGCCGGC
AGGGCGAACGGATCCTTGGTGGGGTAGAGATGCCCTAGGGCGCAGGCCACGGATTCGTCG
TCGTACGGGTGCGCGGCGGGGGGCAGGCCCAGGCGCGAGGTGTAGGCGGCGGCCATGGCT
AACTTGATTTTTCTTTTGAGCTGGGGAAAAGTAGGAGGAAGGAGGACCGGACCCGGGCAA
GACCGACCCGAGGAGGACTTGGAGGAGCACCACCTGCCCCCTGTATCACGCACCAGGTGG
CACCACCGCAGTAAGCCTCAGCCTTCATTGCAGTATACAACCTCCTCCGTTCCGGGTTTA
CTAGCCCCGTCGTATTTCGATAAAAAAAAAGCTGATCACGTATTCCCTCAGTTCCAAAAT
AACCGTTTCTACTTTATACTAGCTTTAATACAAAATTATACTAAGCTTAAGACATTTATT
TTAGGACGAAGAAAATATTTAACTAGAAAATATTAGTACCTATTATTAAAACTAATAAAA
ATATCCGTGGGTTGTAATGGAAAAAACAAACTTTCGCACATCTCCAATCCGTGTTGCCAC
TTTTTCTCTTTGCATCATGGTAGATGGTGATGACATGTCCATCTATGTGTTACCATCTTT
TCTCTTTGTATCATTGTAAATGATGATGACATATCCATCTATTTTACGATTATGTCTTAA
GGCGGTGAGATTGGCCATCACAGTATAACATGCCATGTTGTAGCTACCACAGGTAAATTT
GAGAAGGTTGAAAATCTTTCAGACCCATGTTGCACAAACTTTTAATACATTGTACTTTTT
ACTTTGTCAAGAAATGAAATATAGAGGTAGTTGGCAAACTCCTCTACCAGTTTGTATTTA
TTCTTTTTTTTAAACCTTGTATTAATACGGACAGGAGGGCCAAAAATCAAACTTTTATGC
ATGAGGTTCACCGTTCATAACAGCAAATAATTTGTTTCCTTCTAATTTATTTGTTCTTTT
GATTTCAAAATCCTTTCCTTCCTGGGTTACGACAGCACACCTTTTTATTTCCTTCATGGG
TGAAATTTATTCCTTCTCTTGTTTCCTTCTTGGTCTCAAGAATTATCCATTTTCTACGAA
TTTATTTCTTTCTAATTTCAATTGCTTCCCTTCATGGGTGGAATTTTTTCTTTCCCTTTT
CTCCAAACCTATCCATATTTTAATTCCTTTCCTTCTTCGGCAGAATTTTCCCCCTTTGCT
TTGCTTGTGCTCAAATAAGAGCAGAATTTACTCCTTTCCTTTTTAACTCGTTTTCGTCTT
GGGCCCAAGAATTTATTCCTTTCCTTATTTTTCTTTTGTAGAAGGAAACGGGATCCACAC
CTCGCTCTTAAGGTGCCTTGTTGACTTAAAATCATAGGCGTCTATAAAATTGATGGAATG
TAGTATAAATAAACGATGTGGGACTAATGATAACTAAATGGATAATTTTTTAATCAAAAC
CACGAGGTAGCTTGATTGAATTTGTCTTTTATAACTACTAAATCCTTATTTTCCTTTTGT
AGAAGGAAACGGGATCCACACCTCGCTCTTAAGGTGCCTTGTTGACTTCAAATCATAGGT
GTCTATAAATTGATGGGATGTAGTATAAATAAACGATGTGGGACTACTGAATAACTAAAT
GGATAATTTTTAATCAAAATCACGCGGTAGCTTGATTGAATTTGTCTTTCATAACTACTA
AATAGCGAAAGGGATGCACATTTAGTGAGAGAAGATATTTCACTAGATGACGACCGCCGT
TCCTACACATCTGTGCGCTTCCAGGAGTCTCACAAGGACCATGGCTTCTCCGTCGGGATC
CCCCAAGCCCATGTCGGCCAGCGCCATCACCGCGGAACCCTCCTCGCTCTCCATCGTCGC
CAGGAATCACTCGCTCCAGCACCGACCGCTCTCCTCTCATGGTCTCGCTCATATCCCTGC
TGCTTTTTTGCCTCTCCCCTTTGATCATCCAGGGGCTACCGAATGTGATGGATGGCATCT
TTGTTCACATCTCTAGGATAAAGAAGGCCTCATATCTGACCCCTCTCTTTGTTGGCTTGT
TGATTCTGGCAACTCCAAACATTTAAAAGTTGTTATAATTTTATATAAATGAACAGGGTG
TAATTATAATCTAAAATTATAGCACAGGTATAAGGAAATACTTTTTACTTTGCTGAAGTC
GTAAGCGAGAGGATGGCAGCTCGTGTGGTTGAAGTTTGTTTCCGGCCCATAACAAAATTA
TGGCCCATTGACACGTGGAGTCACACAGACGTACAAACCCGAACGTTTTAGGCTTCTAGG
ATGGATGAAATTTTAGTACCACCTCAATTAAAAAAAAATTCTACGCGGGATGAAACCAAG
AATATTACCTTGCTTTATTAATATAGGTATAGGTATAGATTATATTGTTGGATTCATATT
TTAATATAGTTTTTAAACGATACTCTCTCCGTCCGGAATTATTTTTCACACAAATGGATT
AAAAAGTGCACCTAAAACTAAAATATATCTAGATACATCAATTCTTATGACAAGTATTTT
CGGACAGAGGGAGTACTATTTTTACTACATATAACATGTATTTTGTCGCTAAAAACTACG
GTCAAAATCTGGTCCAGCATAAGAGAGGGGCTAGTAAACGGGCATCTTTAAGACGGACCC
GCAAACCGTCTGCATCCATCCGGACCGCGGAATTCATGTAACGCGAGCCTGTATCAGTCC
GCGGGAAGGTCCAGACGTGTTTTCTCTCGTAAATTGGAGACAAAATGGGGGGAGGTTTGT
GGAAATCCGAACACCCGAAGTGTAGGACTTCGACACCCCCGGCCCACCCAAACCCCCCTT
CCGGTCCCATTTTCCACTCCACCCCTTCTCCTCCTTGCTTTGCATCCGCATCCTCCACCC
CCGCCGTCATGGTTGTACCTCTCCAGCAACTGCAGAGGCATTGCGGACGTTCGCAACCAG
CACTGACGATCCCTCTCTCCTTTACGGCGGAGCTATCCACCATGGAGCCATTTGTACCTA
GGTACACTCCGCCACATTGTCGACGACCTCCATGGAGGCCACCACACCCGACACGTGTTC
GGTCAAATGTCATTGAGCTTATTTTCGCACGCCATGTCGTTCTTTCAGAGTCCGAAGGAT
GGTGAGTTATTCGACCATGAAGAATGAGTTGTCATGCGATGTGTGATTGGCCATATCCGT
GGATTTTATAGGTACGAGCAAGGGGGGCTTATGGCAATAAGTGCGTGAAATGTTTCACAC
ACAAAAGCACATTGTGTTAGACGACATGTGCATAATTCAATCATGCAATGTGAGGTCATT
GTCATATCGCTGACACGCTATCCAGATGAGCGTTACCAAGTTTTGCAATGTGGTTCGTCA
GCTCGAGGCAAGTTGGCCATTGCTCGCGGGAGAGGACGAGATCATAAGTTTTTATTCATC
TTGCTCAACTTGTTGATTGATTCATTCACTTGATGTTGGTCTATATATTATATGTAGCCC
GCACGCGCTGCCATAGTGTACCACGGGACAAATGGGTGGCCATTTAAGTGCACACACATT
GTTGGATGAAGCTAAAGAGGGGAGTATGTGTGAAACGACATGATTCGTTGATGAAAAAAT
TGTTGGACATCCGGGATCTAGTCGAATTTGAGACATTGTTGTACTAGACTTAATTTGCAT
GCTCTGTATGGATGATTTGTGCTATTTTCTACCCAAACTTTGATGATATCGGTCAGAGTC
GGTGTCAAATCCGGCATATATCGTAGTAGGGGTCCTAAGTTAGGCGTCTTGGAGCAATGG
TAACATGGACACACGATTTTACCGAGGTTCGGGCTCTCTCAAGAAGATTATACCCTACAT
CTTGCTTTTGATTGTATTGATATGAGGATAGTACATAGTACAAGTATCTACCACGAGATT
GTTGTAATGAATATAAGATTGTCTATTGACTAGCGTGGCCTCTGTTTATATAATGTACCG
TAGGCCTAGGGTTTAGAGGAGTCCTTGTCTTGTGCGCCAAGTCTTGTGGAATCTCCCTTG
TATGCATCGTGGGCTATTCGAACTAGCCCATTAGTGAACCGCCATGGGGCTCCTCGGCCC
TCCCTACTCATCGGGAGACGACGTGGTGAGTACCCCTAGTCTAGGACACCATCAGTAGCC
CCCTGAACCGGTCTTCAAGTTGGGGAAGCTCCTCGATTCTTCTGAACTATTCTTCATCTT
CGGTTGTCGGTCTTGAAAACTGGTTCAACAAATCTTGCCATCTTTGATCTCGAGGATTGC
CGAAGTGTATCCGAAGATTTCACACGTCGGGCTTGAGAAACTGCTGGCTAATCCNNNNAC
AGGAGATGGAACATCACCTCCAGACTTGCATCTAAT