morexGenes - Barley RNA-seq Database

Contig contig_1559214

Source Contig contig_1559214

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1559214 (7367 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1559214

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10496	1	964 bp	MLOC_10496.1	Available	Available	LOC_Os12g30780.1, FRAME:+2, EVALUE:8e-13, 13112.m03136 protein retrotransposon protein, putative, unclassified
MLOC_10497	1	1807 bp	MLOC_10497.1	Available	Available	LOC_Os02g29464.1, FRAME:+1, EVALUE:0.0, 13102.m03209 protein RecF/RecN/SMC N terminal domain containing protein, expressed

CDS Structure of MLOC_10496

CDS Structure of MLOC_10497

Contig Sequence (7367 bp)

>contig_1559214 7367 assembly3_WGSMorex_rbca.fasta
GGCAAGCCTGGCATGAGGCTCTTTCCTGGCTGCGCCTACCAGCCCCCGCACCGGAGCAGG
ATATCTCCATTCAGGACTGGTGGATCAGGGCGAGAGATGCAACACCACCATCACTCCGCA
AGGCGCTGAGGTCCACCACACTGCTAGTCCCATGGATGATCTGGAAACATAGGAATGCGT
GTGTATTTGATCATGCCACTCCGTCGCTCCCCGAGCTCGCGGAGGGGATCAAAGATGAGA
TGAGATGTTGGGCTAGAGCTGGGGACAAGGGGCTTAGGGTAGTTTTGCCCCCATCCTGGG
ATGTCCACTGAATTGCGTGTAATCTGTTGTAACCGTCTCCTCTGAGACCGACTTTCTACC
TTTTCAATACAAAGAAACGCACTCTCTGCGTTTTCTCGAAAAAAAACTTGTGCAGTTGTA
GGTCACTGTTTTGTATGGAACAGGGTAATATTAACTGGCTGGTGCTGGTCATTAACCTAC
TGTTAGTTAACAGTCAGGTCTCGCCACACACTAGTTTGATCAGTTTAATGTCATGGGCTT
ATAGCTCACTTGACCAACTGTAACGAACCCAGAGATCTAGGATCGGTACAAGGGGAATTG
GGGATGAGTTCAGATTTGCTTTATTGCAGAGGTAGATGAGGATACAGAGAAGTTAGGTGA
GGGAAGAGGCTCCCATTTCTGACCAGTGGGGCCACACCCTGGCCCGCACGTCACTGTCCA
CCGCATCAGGGGGATGCGGGTGTGACACCAACTTTGGGAAGTACTGGGTGCATGCAAATT
AACTTGTGACTGTTGGCCTAGATTTTAACCCTGAAGGCATGATCTCATTATTCTTTTTGT
TGTATTCCTATGTAGTTTTGTGCATCAATGACACTCCAACTCTTGCACTTGTGCATGTAG
GGATGGCAGTTTTGCCCATGGGTATGGGTAGTTGGGTACCCTACCCGAAAACAGTGGGCC
TGGGCAAGACTTGACAAGATTTTGTACCCATGGGTAATGACTACCCATACCCAAAAATAT
ATGGGTAGGGCATGGGTATGAAATTACACCCATGGATAACCCATGGATACCCAGAAAATT
TAATAAATGAAAATAACTCCTCTGAGATGTGAGATCAACATCCAACTCATATGGCCCAAC
CCACAATACCTTATTTCCTCAACCAACCATAGCTCATAGGCCCGTAGCCACAAGCTTGCC
ACTCTTATGTCCTGTGTGACCCCTAGAAACGATGAAATCTTGAGTCATCACAACGGAGTC
TTGTCCAACTCTCGGACCAGCGATCCGTAGTTTCCACAGCCGCCTCCATTGGGTATAGGA
TAGCCAATGGGTCTGTGCACGGGTGTCAATTTGTGCCCATGGGTATTGAAATGGGTGGGT
ATAGAAAGTTTCTGCGGGTATGGGTTTGGGTAGGGGAAGGGGTTGTACCCACCCATACCC
TACCCATTGCCATCCAGTGCATGATGATCTAATACATGCTAAATGTTTATTTCTTATGGA
CCAGCATTTAGAAGAAGCTCTTGTTCCATTGTCAAAAGAGAGAGAAAGCTTGTTGCAAGA
GTATAAAGCTTTGAAGGAAAGGTTTGATCAGGAGTATGATCAGCTGGCAGAAAGAAAAAG
GGGATTCCAGCAAGAAATCGATATACTTGGAACCCTTAACACACGCATCAAAGGGTATAA
TTTCCCACTCCAGCTCTTTCAATTTGTCCCCCTGTACTAACTACTTTGTCTAATTTTTTT
TCCTCTTAGGTACCTGGATTCAAAGAAAGTAGAGAAGCTTAATGAATTTCAGGAAAGGCA
TACCCTATCCCTGTCTCAGTTACAGAAATGTGAGGCAAGAAAGCAAGACATATCGGTTGA
GCTTGACAAGAGCAAACAGCTATTACGGAGCCAAGATCAATTGAAAAGAAACATTGATGA
CAATCTGAACTACAGGAAAACAAAGGCCGAAGTGGATCGACTTACTCATGATATCGAGTT
ACTTGAAGATAATGTGCTTTCCATCGGCAGCATGTCTACTATAGAAGCTGATCTTAAGCG
GCATGCTCAAGAAAAGGAGAGGCTTCTTTCAGAGGTATTGTGATCCTCTCATTCCTAATA
ATTGGCAAACTTGTCTCTAATAAGATGCCATTCTTTTTTCATACCTATTTTGGGAATCAT
GAACATGCACTTGGCCGGATAGTACATATATTACATATTTCTTACAAGAGTAAAAATGTA
CGCCCGTCCTTCAACTTTTCAGAGGCATGTCACCCAGGTCCTGGTAATATGAAATGCATG
TGTTTGTCCTTATGGTAAATTAGTGAGTCATCAGATGTCCTGGCCTAATTGATTTGCGTA
ATGCACAGAAGTCTAAAATGAGCAATTTCATAGAGCAAGTATCTAAGTGACACAACTTTG
GAAGTTCAATGGCACACCATACATTTTACTCTATTTCTTAGTATGAAACTTTGTCAAATA
TGGCTGACACCTTTGATCTTTGATTTTCTTGGCAATCCCTGCAGTATAATAGGTGTCAAG
GAACAATTTCTGTTTACCAAAGTAATATTTCAAAGCACAAACTTGAGCTTAAACAGACAC
AATACAAGGATATTGAGAAGAGATATTTTAATCAACTTCTTCAACTTAAGGTATTTGGCA
TGATCTCCCAGGTTCAGTTTCTCCAGCTTTGTGATCTTATTACTTGATGAGAAAACTTAT
GGGTTGCAGACAACTGAGATGGCCAATAAGGACTTGGACCGATACTATGCTGCTTTGGAC
AAGTGAGTGTTCTTTCACAGCAAAAACGTCAAATCTGACCTTCCAGTGATATTGAGGCAA
AAATGACCCCTCCTAGAAATTTTAGCATGATATGATGTTTAGCTTTGATGGGTAAATGCC
ATGGTCAATGGCGTTGCTAAAAAACTAGTGACTTTTTGAGCAAAACGTAGCGTGCAAATA
CTTGTCGTGGTTTGAGTTCAGATTGGAACGGGGGAGTAATTTTTCTGTTCTTTGCCTTAA
TGATAGACTTGCTTCCCTTCAGTGTAGTGATAGGCTGAAAACATGGCGGGTTACACCATT
ATTCTTAACATGTCGAACACCTCGTGAACTCAAAACATTGCAAGTTTCCATATTTTCATG
TAAATTGTGCTCCTGCCTTTATGGACCCAATTTTCAAATTCAAACATACTTCCTGTTATG
GAAATGGGTTAGACGTTTGATGTAATATTACTGATGTTACCATTGGGCTATTCTCTATAG
AAGTATGTGTGACTCATAAATAAAGGAAACACAATACTGGATTAACACTAACAAATGAGC
TTGTACCCTGCAGTATAAAAGAACTTGCTTTTGGGTTGGTTCATGCAACCTAATATGTTA
GTCTGGGCGTTCGGTTCCCCCGAACCGTTTGGGTCGGTCCTTCGGCCTATTTAAGATTTC
AGTTTTGTCTAAATACCAACGATCGCTCAATAGAAAATTAGCTAATCGAAGATTCTGTAC
CGAAATTTCGCTTCGGTCTTCGGTTCTACCGAACAGCACCGAGATATACTACTCCGGAAT
TGCTACCTGTTGCCAGTACTAGTAGCAGCAATAGCTACTTTATTCTGATGTACAGTGCGT
GTAGCTCTGCCTACTAGCTAGCTACTAAAGGCTAGTCTCCTTGGCTACTCCGTCCTATTG
ATTCTTCCGAGCGAAACTTTATTACTCTGTATAATTAGGGGTGGCCGCTCACTAGGTAAA
GTACTCCATGTAGAAACGAATTTAAGCAAACAGGTAGTGGACTACTCTTTTTTACACAAA
ATTTATAGTGGGGACGGTTCACTGGATCAGGTTCACATCTTCCCAATGCGGCTGTAGGCT
CGTGCACTTGGGCAGATAGCGGACAGAAATACTACCTGAGTAGCAACAGGCACGCAGGTC
GGACCTGTGTGTTTACTCGGTTTTCGGTCCACTTGGGTATTAGAGGGATAAACCCGAATT
CACCGAGCTAAGTCCGGTTTTCAACAAATGCAAACCGAACATACTACCGAAGTACTCGGT
TTCGGTGCCGGTTATTTCAGTTTGGGCATCAGCGTTGAGTCCATAAAACTGGACCATAAT
ACCCATCACACTGCCACATGACTAGTTCTGGACGTTTACCAGCGTTGAATTTGAGGTAAT
AGGGCTTAACCCTAGTAGTCACCAGTCAGTAGTCATAAACAGTAGTAACTACGGACATGT
GAGCTTGAAACTGTGTTGTATCTGTTGAAGGTGGGCATTTCACTTGTCCAATATCGTCTC
TTACTTTACTTTCACTAATTTCAAAATTTAAGTCCTCATTTTTCTTTCTGAATAGATTAA
GAAATTGTGAAACCATGGTAAATACGGCAAGGTGGAGGGAGTAGTACATACAACATAGAG
TATTTTTCTTAAAACTTTTCCTTTTTTGCCAAACTGTCACTGAACTACACTTCTGAATAG
TTTTTCAAATTACAACTTCTTTTATATTATTATGTCAGAAAACCATCACACTTTTTAAGA
ACTGAGTTGTGGCCCACCTTCAGAGGTCAACAAGAGAAAGATTCTGATTTTCTTAAATTC
TGGAAATGGATATTGCATTGATGGTGGGCCATGGTCACATTCCGAATTCCGTGATATAAG
AAAACTCTGTTTTTTGTGGAACTTTGTTGACAAGAAAAATTATCCATAAAGTATATGGAT
GCTCCGTAACTTTCTTTATGATGGCACACTTGTATTTCTGTAGGGCCCTTATGCGGTTCC
ATACCATGAAAATGGAGGAGATAAATAAAATAATTAAGGAATTGTGGCAGCAGACATACA
GAGGCCAAGATATTGATTGCATAAGCATCAATTCTGATTCTGAGGGTGCAGGCACTCGAT
CATATAGCTACCGTGTAAGTTAAATTAGCTACATGTTTACTAATTGATTAGCTTGGACAG
CTGTTTCATTTGGCTGTTTGAACCACATTGTAGGTTGTCATGCAAAATGGTGGTGCGGAG
CTGGAAATGCGAGGGCGATGCAGTGCTGGTCAGAAGGTAAACTTGTTTTGTTTCCTCTGT
CGTCATAAACTTCAGCTAGCATGATCATATGAATCCGTTAAGCACGCAGAATCATATCTC
ATGGTTGTCTCCACTGCTTTTCAGGTGCTTGCTTCTCTTATAATCAGACTGGCACTGGCA
GAGACATTCTGTCTGAATTGTGGCATATTAGCTCTGGATGAGCCAACCACCAATCTTGAT
GGACCCAATGCTGAGAGCCTAGCTGCTGCTCTATTGAGGTAAACTTTCAGGCATGCCGAT
TTATTATTATTTGGAGCTTTACCAGTAACAGTCTCTTGTGTGTGCCATAGAATAATGGAG
AGCAGAAAAGGCCAGGAGAACTTCCAGCTGATCATAATCACCCATGATGAGCGGTTTGCT
CAGCTTATCGGTCAGAGGCAGCTTGCGGAGAAGTATTACCGGATCTCCAAGGATGAGCAG
TAAGTTCATCCAGTGTTGTCTATTGCATATTTTTCTGAGCTTCCAGTGTTTGCACTTCCG
TCGGTGTAAGGCCTCTTTGATTCAAATTTCAAAGGGTGTTCATAGGAATTCTGGACGGTT
GAAAATCTCCAGGCCTCGTTTGGCACAAGGGGGTTGGAGGGGTTCAGAGGGGATTATCCC
TGTGGGGACAGAAACCTCCAAAATTCCCCATGAGTTCATTTGGTACACAGGGTTTGCGAA
TGGACAAACCCCTCCGAACCGGGGATTCAAGGGGATTTGAGGGGATTGAGTGAAAGCGGG
GGATTCACCAAATCCCTTGAAATCCTCACCCCCTTTGGGGTTTGAAAACCACTTGTGCCA
AACAAGGCCTTATGAGGGTTGTTAGATTTCCAGGATTGTATACCGCATTGAATTTTTCCT
AAGAATTCTACCGCATTACATTTTTTATAGGAAAAAATCCATTGGGAAGAATCATTTCCC
CCTCTCTTTGGTGCAATCAAAACAAGCATTCCTGCAAATTCAGTTCTGTATTTCATTATA
TTGCAATTCTATGGTTCTTGCGTTTTTGTTCAGAATCGTGTGGGCCTAAGAGGCATGTTG
AAGTTGTCTGGAGTGCGTGCATACCTGCTGATATTATTTGGTTTCTTGCATAATATTCAT
AAATTTGTGCAATGATACTTTTAAGTATTATGTTTTTCGGTGCTAATATTACCTTTGACT
GGACCCTGCAGACAACACAGCAAAATAGAAGCCCAAGAGATATTTGACTGATGATGGCTG
CTTGCAACATATATGCTCTCGGTGCTAATCCTCCTTTACCGGCCAAGTGGGTGCGGTTCA
TTATGATGGGCTGTCATGGAGAGAAATGGGTACAAGCGAACTAGTAGTAGGTTCTTTAGT
TTGGTTTTTGTGCATGCAATTGCCTGCTTATTGTTGTATATAATCTGGAGGTGCTACTGT
GTTGTGACTTATATCTCTTCTCTCTTTATTCTTAAATTGACTCCTAATTCAGCCACCACG
CCGAGCAACGTCGTGTAATGACGGAAAAAAGGGTTGTGTTATAACGAGAGAAGGGATTCT
TGGAAGAATGCACGGTTGCTATCCTTTTTTATGTCAATTTTTTTTCTGCACCTAAAAAAG
TTCTTGAAAAGTATATATACCTTTTCCCACACGTCAAAAATATATATTCAAAGTATATGT
GTGTAGATTATTCCGCTGCTAGCCATGACAAATCTACTGTTTCTTCCAAACAAATAAATT
GCAACAGCAGATGTACCCCTGCACGCCAAATAATTAGCTCATCCAAGTAGATGCGCGTGA
CGCAGGCATCTCCAATTTGTTGGTCGGGCAGGTGTTTGTCTTAAATCTAATCTGGCCTTG
AGTATGAATTTTATTGTCGGTATATAGTTTCACATTGTTGAATATATTATCAAATTTTTG
ATTGACTTAATCAAAGTAAAATATGATGATGATACAAGTAATATTAATCTCAAACTCATA
TTTAACCATGCAAAACACATACTATGCATAGAGTAGAAACATCCATGTAAACAATTAATA
TAGCTAACATAAGAATAAAGATGAGAGGGATAAATGGATTGTACCCTCCCGTTAGCCAAG
TCAAAAAAAGAAGAAGAAGAAGAAGACATAGCGGTGGTGGCGTCCTTCTTGAATTCGGCT
TTTTTTTTTTTTAATATTGTATTTTTTTAATTCTTTTTGAAAAATAATGCACCGATTTGA
ATATTTTCAAAAGTATGCCTGCCTCGGCCTTGGCGTGACCGACATGAGGCTGTCGGCGTC
GGTGTGGCCGACAGGAGGCCAGTCGGCCTAGNCCCGGCCGATTAGTGGCTCTCGGCCATG
TGGCGGCCGACTAGTGGCCAGGCCACGTCGATTGCCCTGTCGGCCCT