morexGenes - Barley RNA-seq Database

Contig contig_1559190
Source Contig contig_1559190
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1559190 (7627 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1559190

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10485	3	1030 bp	MLOC_10485.1	Available	Available	LOC_Os05g42190.1, FRAME:+2, EVALUE:1e-91, 13105.m04486 protein NADPH-dependent FMN reductase domain containing protein, expressed
CDS Structure of MLOC_10485

Contig Sequence (7627 bp)

>contig_1559190 7627 assembly3_WGSMorex_rbca.fasta
GTATTCTAGCCTGCGAGGCCCCTGGCTTGTAATATGAAGCTTGTATGTTTTTTATTTGTG
TCTAGAGTTNNNNNGTGATATCTACCCGTGAGTCCTTGAACTTGGTCGTACGCATTTGCG
TGTATNNNNNNNNNACGATCAAATCGAGGGTGTCACAGCCCAAAGCGAGCACAACTGAAA
CATGAACTCCCACTGCAACGACACTAGGTCCCTACCCAATACACTTCGGATTGGGTCCAC
TTGCTTATTAGTCCACGTGAATCTATCCCCTATTCAGGCTATCTCCCGTAGAGCCAGGTC
GGCAATGCAGTCATTGAACATGCACATACATATCTAATCCACATTCGGTGAGATCTTATT
AGCCTCATGCTGAATATGGTTAAAGTCTCGGGCCTCCTGAACGTGACTAGTGCAGCATTC
AACTTTGTCCTTAAGCTCAGCCAAGAAGTCCACCGACCTACCGTAGTCAGCCGGGCGATA
GATGATGATCACCTCCCAGCTGAGGTTCACACGCCGGTCAGTGATGGACATACTAAGGAG
AAACTCCCCGATCCATGTCCTCGACCGAGAAAGCGTCCTCCTGGACCCCAAGCAGGATGC
CCCCCGAGAGACCAGTGAAAGGCAACCTCTGCCAGGCAAACGGGTGGCGGGAGAGCCCCT
GGAGCTCCTGGATGCGGAAGTCCTAGCGAGTCGTCTCATGCTACCCAACAATATCAACCC
TCTCCTGTTTGATGTACTCGATCAATTGCGGCTTCTGGCCTAAGTGCCCGAAGTCCGTAT
GTTCTAGCACAGGAGCTTCGTGAGGAAACCATTGCCGACGAACTAGAAGGCCCCCCAGGG
GGGCGAGTTAGTCTAACCGCCACTTGTGGACCGACGAACCTGCTTGGATGGGCGCCTGCG
CCGCCCTTTCCTAACAGGGTCATCCGCGACGTCAGTGTTTCAAGATGAAAGACCGACACT
AGTGCCACGCTCCGCCACCCGCTGATTAGTGAGGTGGAGTACACCTTTCAACGATTACTC
TCACCTCCCTAGATTGTGACAAGTGGCGCACTATATGCATGCCACTTGTCGCAACCGGGA
GTTTTTCCTTTTTTCGTAGATCCGTATTTTCAAAATACTGTTTTCACTGTTGGGTTTCTC
GCGTCGAGATCTTCAAAACTGGACCCCATGTTGATAGGTTTTTACAAACTTTTTTTTCAC
GAAAAAAATCGAACGAAACAACCGGCATTTTTTCCTTTCCGAGAGGCACGGCCGTGCCTC
TTGGGATAGCAAAACCATGCCTCTCGCGAAAGCAAAACCGTGCCTCCCGCGGAAAAAAGG
GAGAGCAGAAAACGTGTTTTTTCTCTTTTCCAAGAGGCACGGCCGCGCCTCCCGCGATAG
CAAACCCGTGCCTCTCATGGAAGCAAAATGGTGCCTCTCGTGGAAAAAGGAGAGAGCAGA
AAACGCGTTGTTTTCCCTTTTCGAGAGGCATGACCGTGCCTCTCGCGATAGCAAAACCGT
GCCTCCCGCGGAAGCAAAACCGTATCTCTCGCGGAAAAAAAAGCAGAAAACACGTTTTTC
CCCTTTCCGAGAGGCATGGTCGTGCCTCTCGTGATAGCAAAATCCTGCCTCTCGTGGAAG
CAAAACGTGCCTCTCGCGGAAAAAAGAGAGAGCAGAAAACATGTTTTTTCCTTTCCGAGA
GGCACGACGGTGCCTCTCGCGATAGCAAAACCGTGTCTCTCGTAGAAACAAAACCGTGCC
TCTCGCGGAGAAAAAGAGCAGAAAACGCGTTTTTCCCTTTCCAAGAGGCACGGTCGTGCG
GAAAAACCTAAAAAAAACTATTCTAAAAAGCCAAAAACACGTGCAAAAATAATAATAAAA
GAAAATTACGAAAAAACACTAAAAACGCGACACGTGACGGCGGCTGAGAACGCGTCAAAT
GACGACGCGCGGAAGTGATCGCTGACGAAAAAGTGCTCGTTAACTAGTTGCTCCTGCACC
ATCCTGTCTATTGCGGGGCCGCCAAACGCAGTAGACGACAAGCCCTGACTACCAGACTTG
TCCTCGACCCTGGGATCTCCATGCCTAGAGTCATCGGAGGCAGGGTTCACCCCCGACCCA
CTATGCCCAGGAACGTTGGGGTTCCGGACAACGTTAACGTTGGTCAACTCGAGCGCGGGC
CTCGGCCAATGCCCCGTCCAACCACCCCTTGGCAAAATAGCCTTTGATCTGCTGAAGGCG
AAGACCCTTCTCGCCGGGCTTTCGATATATAGAAATAACATAGAGACATACATTACATTT
GATGTCTATGATTGGATGGCTTGCGCTTTGCCCACTGTCATGGACACATCCGCACGTGTC
CGCGCACGCTTGATACTAACCGTTTGATGAACCGAGTTAAAGTTGCCGTTAGGCTGCTCA
TAGTGGGGAGTANNNNNTAGTAGTATCATGCATATGTTACTATTGTATGATACTACCTTC
ATAGTGTATAGTATCATAAATTAGTATCATAGGTGATCTTATTTATTGACATGCATGACA
CATACTCCCTCCGTTGTTAAATATAAGACATTTTAGAGATTCCACTATATACTACATACG
GATGCATGTAGTCATATTCTAGAGTGTAGATTCACTCATTTTACTCCGTATGTAGTCTAT
AGTCAAAACTCTAAAAGATCTTATATTTCGGAACGAAGGGAGTAGTAGCATAGCACTTAA
CATGATACGGTATCTACCTATCTTACTCTAACCCTCTCTCTCTTTTTTAATTACTTGCCA
CAACACTATATTTACTAGTCACAAAACTATGTTACTAGCTATGATACCCCCTATGGCCAG
CGTTAGTTCTACCTTCTCCCATTGCTGGATCGCTGTTAGTACTTTTCTCCGAAGGAATTG
GCCATTGAGATAGTCGACATATACGAGACAGGGGGGCTTCAATAGCGACGCCATCAACAC
GCACTCAACTCAACCAGCTGATGCCGCCCAGCGTAATGTCCAGGTTCTTTCTTCACCGAC
CACACCAACGATTCTTAATCAGCAGCCTTCCTTTAGTGGTTCGATAATAGCGAAGAATTT
TATTCTAGTACTAGCAGTCGTACCTGGATAAGGCAGTACTACTACATAGCAGCCTCACTT
TCCAGAAAATGAGATTAAGTTTCTTCTCGGCTTCTCTATATTCCAGCTTCATCACCCATA
CTGCCACAACAAACCCACAAGAAGAAGCAGAGCAATTGCAAAACAAACTAAAGACCAACT
CTGCAGCTAGCGGCAATGGCCACTAAGATCTACATCGTGTAATGCTCCGCCCCCGCTCAT
CCTTTTTCCGGCTAGCGAGCTGAATGATTTGATCACTCATCTTTCTTTCTGTCTGCGTCA
ATTTTCAGGTACTATTCGACATGGGGACACGTTGCGACGCTGGCGGAAGAGATAAAGAAG
GGCGCCGAGTCCGTCCCTGGCGTCGAGGTCACCATCTGGCTGGTGCCCGAGACGCTGCCA
GAGGATGTGCTGGGGAAGATGCACGCGGCGCCTTGGCGTGAGGATCATTCCGTCATCACA
GCGAGGCAGCTGGCTGAGGCCGATGGCATCCTGTTCGGCTTCCCGACAAGGTTCGGCATG
ATGGCCGCGCAGATGAAGGCCTTTTTTGACTCCACCGGCGGCCTCTGGCAGGAGCAGTCC
CTCGCCGGCAAGCCAGCAGGCGTCTTCTTCACCACAGGCACCCAGGGAGGAGGCCAGGAG
ACCACTGCTCTCACGGCCGTGACGCAGCTCACGCACCACGGCATGCTGTTCGTGCCTGTC
GGATACACGCACGGCGCCGGCATGTTCGCCATGGACGAGGTCAAGGGCGGCAGTCCATAC
GGAGCTGGCACCTTCGCCGGTGCCGATGGCAGCAGGGTACCCAGCGACGCCGAGCTGGCC
TTGGCGGCGCACCAGGGGAAGTACTTCGCTGGCATCGCCAAGAAGTTCAAAGCCGTCTGA
AGTCTGATCACCAGGCACATGATAATGCATGCGATCTTGACTGCAATATGATTTTACACA
GCCATGAAACAATTTAAGCTGTAATGATTTGATTTCTTGATTGGAAATAATAATAACGTG
AGAACCTATTCTGTGTGCACACACTCTAGCGGATCCATAATAGCAATTGGTGATATCGAT
GTTTTGTTGCCAAGCTTGGTGGACTATATATAAAGAGCATGTGATTTGTCGAAGTACAAA
AAAAGGTATAAATTCTACCCTGTCTTGCATTTCTTAAACAATCACAATACTCAACATGGT
CGACCGATCTTGCGAGAGGAACGCACGTCGCTCCATCAAGGCCTGACTCCCACGCAACCT
CATCTCGAGCAGCATCATGTAAATAAATAAATAAAATCCTATGTTGTATGTGCAACATCG
ATGAGTCCCCTCGCACTGCCCCCTATCCACTCTGTCACGCAGTAGCCACCTCCCATCCCC
TCCCCGGATGAGCCCCACCTGTAGCCTCTTTGTTGGCGTCCTGAAAGAGGGGGTGTTTGC
CACGTCGGCTTGTCGGTTATAGGCCGGGCCGAGGACCTACCAAAGGATGGTGATTGAGCC
ACACCGGCCCATATCCTCGAAGTAATCAAGACAAAGATCTCCTAGAGTCTTGGCTTACAT
TTCAAGCGTATTTCGAAGATTGACAAGTTTATCCTTCAATTGTAACCGACTATGTGTAAA
CCCAAGGTATCCCCGACGTCCATATAAGCTGCGGGGTTTAGTCTGTAGAAGACATTTGCA
AGGCTACGAGCTTACAACTACTTCATACCGTGTCGAGGTAGATCAATCTGTACTTTGTAC
CCCATGGCAGTCAATATATAAGGAACGCGGCGTAGCGTTTTACCTCGTCAAGAGGGCCCG
AACTTCGGTAAAACATAGTGTGCCTATTTCTCCTGTTACCATCTAGCTCACATCACCATG
TTTCGGACCCCCTACCCGATATCCGCCGGTTTTAGTACCGAAATTGGTCGTCCATGAATG
TCCTGCCTGGAGATCACGAGAGTTCGATGACAGGTCTTCACACCGATAATGACATCAGCC
ATGTACTGCATGCCGACCCCACAGGCCATCTCGGTCAGGTGGAAAACCTCCTTCCAGGCC
AGACCCTCTGGTTCGGTAATGTCGAATTCATCGCACACTCTCGCTGCGAGCTCGCCTTCT
CGGGTTGTGTATCAAACCAGCCCCAGAATCACGGGGTTGACGTTGCCCACAAGCCAGATA
CGATCTCGAAGCAGCGCGATAACGAGACCCACTCCCTGGACCAGATTTCTAGCCCAGATC
CGAGCTCTACCATGTCAACTCACCCATCAAGCCCCTCGGACGGAATTCCTGAGGTGGCGC
CAAACCACTGCCCAATCATACTCCAGGTTGGTTTGCCCTACCATGAGGAGATGGAAGAAG
CCGATATCTCGGCCTTGAACAAGTACTAGATCAAATACAAAGCCCGAGACTCTCAAACAT
ACATGCCTCGATCTACAACAAAATCCGTTGTGAGCCCAATATTTCAGAAAAAATTGTCCC
ACTTGTCGGTGTCAAAATCGGTACATCTCGAGTAGAGGGTCCCGAACTATGGATCTTGGA
TCGATGGGTAACAGGAGACAAGGGAGACAATGTTTACCCAAGTTTGGGCCCTCTTGAAGA
ATGTAAAACCCTGTGTGATGCTCTTGTTTATATTGATGATGNNNNNNNNNNNNNNNNNNN
NNNNNACCTCGAGATCATATGTTGTGGTCTAGAACTCTAGGAGTAATGATCTTAATCTAC
CTTACGGACTAAAGCCCTCTGGTTTATATAGGTACCGGCGATATTAGGGTTACACATTGT
GGGTTACATCAAGGAGTAAACATGCCGATATTAGCATCTTGACTTGGAGGGTACACCAAG
TCTTCGGAAGAATACATTCTAGACACGACGTCGTCTTGTGATTCGGGCTCCAATGATAGT
CATAGGACCTCCCATGAGTCCGGCCCATGAAAATAGGTCACCGGCCCGAGGACCCCCTAG
TCCCGGACTTCCTCAGTAGCCCCCAAACTGGCCTCCAATGTCGTAGTCTTGGTTCCCAGC
AGCTCCTTGTGTTCAAAGTCTTCGTCTTGTGGGGCGAGTTCCTCTCCCCACTTATACTCG
GCCGATAATAATTCGGCCTCCGATGACCTCCATGTTTCCAAACAATGCATATGACCTAGC
CTCAAAGGACAACTGTTCATTGTGAATAACACTTTTGTTTGACACCTTTTAGCGAAAGGT
CACGACCAGTCATGATTACTGACCAGTTACAAAAGCGCGGTGTGAGACAATTTTCTCATT
GGCACGTTCGATTAATACGGAGATCGTGCCCCGCTTTTTAGGGGATATGGTTTATGATTT
GGGCTATCCCACGCGCGCATAACTGCACGATTTATTGGGAAACAGAGAGGTTCACGGCGC
AGTAGAGGGGCTCTTGGTATTACACCTGCTTATAAAAAGGAAATCGTCACCATAATCTTC
ACATGCTCCCGAGATCTCACATCACCATCGCCTTCCCCAATCCTCAAAGCTCCAAGCTTC
AAAGCTTCCTCCTCTCCCCAATCTCCTCGAACCCTATCTCCAATTCGGCCATGGCCGGAT
TGGGATGGAAAGGCAAGTGGGAGGTCTCAAGTGTCACCAACAGTGATATTTCAGAATGGA
AGCACGTCGGCTACTTGTCAACGAACATCGTTCACGGCGCTCCAGAGAAGTGCCAGGTCA
TCCCCTCGCCTAAAGAAGGCGAGAGGGTGGTATCCATCCCTCACTTCTCCAGGGCCCCGA
CTTCCCCCTCCACCCCTTCGTACGGGGTCTAATGTTTTACTATGGGCTGGATTTCCAAGA
TCTCCCCCACACTCTTTTTTTGCATATTGTGGATTTTATCATTCTCTGCGAGGCCTTTTT
GCGGGTCGAACCCCACTTTGGCTTGTGGTTAAAGGTCTTCAACCTCAAGCCGAAGGTAGT
TAACGGCGAGCATTCACACTGCGGGGGAGCGATGATTAGCAAGCTCCCTTGGTTCAATGA
CCGAATGGTTCTTTTATAGACACCATGAAGGTCTGGCAGCAAGAGTGGTTCTACATCATC
GAACCACGTGACGCGGAGTGGGAGGCACCCCCGAGATTTAGATCCGGTCCTCCCGTTAGA
CTGGTGTCATGAAAGGAGAAGGCGCTTGATTGGGGGGGGAGCCGCAGAGGTGAAGGCGCT
GCAAAGGTGCATCTCCATCTTGCTGAAGAAGAAAATCGAGGTGACCAACGTAGTTCAGGT
CGTGGTACACTACACACTCCTCCCTTGTTAGCATCGGGCCGCTTCGACGTAGTCTTACAG
TCTGGATGACCTGGTCACTGTGCAAAACTTCTTCCGCATCACCCACGAAAAGCTATGAAA
GGTGTTGTTCAAGCCACATAAGACTTGGCGGGCGGAAGACAAAGGCATCGTCATCGATGC
AACGAATCCTCCTCGACTGGTAAGATTTCATTATATGTGTTCGAGGTTTTTTCCTTTTAA
CAAGGATCTCACTCCCCTTTTCCTCCGCATTCACAGATCTGGCTGGAGATGTCCCAACAG
ATCAACTGCCCGGTGCTACTGCAACAAAAGATCTTCCAACGGTGCCAGAAATAGGCACAT
CGACGGG