Map Locations of contig_1558908 (6848 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1558908

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10361 1 1096 bp AK364999 Available Available None





CDS Structure of MLOC_10361






Contig Sequence (6848 bp)

>contig_1558908 6848 assembly3_WGSMorex_rbca.fasta
CTCCGGGAGCGGAGCTGGCGGAGCTGTAGTTCAAATTAAGGGAGCTGCAGTTTCCCAGCT
CCACAGATTCCGGGAGCTGGTGGATTACCGAACAGGGCCTAAATGACTAATATTACATAA
CTGACTTATCATATGCATGATTCATCGTCACGTAAATTATACAACTACTGGATAACTAAA
CATTACCTGCATTTTGGATGAACCAGAAGTAGATTTCTTGTGATATCCACTGTCCATCCC
GTATTCACCAAAAAAGTTTGAAGACTTTGGGGGCGCAACATGCCCAAATGCCTGGTTTTC
TGCAGAGCTGCTCCCAGCAGAAGGTACATTTTCCACATATTCAAATCGGGAAGTATGAGG
TTTGCTCCTAGCTGTAGTGCTTTCAGCCACCGATGGCAGGGCAGGAGCTGGCTCTTCAGG
TTTCTGCTCATAGAGGCTTTCACTTGGCTAAAGCAAATGGCAAAAGTTATTAGTACAGAA
TATCACAAAACTAAACTAAACCAAATAAATACATTTGGCAACTGGCAAGTTCAGTGGAAA
TCTACAAAAATTAGTGTCATATCAGCACTAAGCTACTCTTCTACCTATTTTTTATTCCTA
ACACAAACTGGGCAAATCTACTGACTCAACATTGTATGAAAAGTAAAAGTAGAACAAAAA
TAGGCCTGCTGTCTCCTCAGTTTAGTTAAGTGTAAGCTGCAGACTGTGTACCTTTGTCGT
AAGCTTGTGCGCACCAAGTCCACCAGTCTTACTTCCAGGCTTCTTTCCACCGATTGACTT
CTTGAATGAATGGGTCGGAGCTTTAGGTGAACGAATAATTTCAGGCTCAGGCTCATTCTT
CTCATTCACAACTTCTTTCGGCACCTCTACCAGTTTGAAATCAGGAAATGCAGCTGCTTG
GGTTGAAGTCTGAGAAGCTGCGACTGGGGAGGACGGCCAACTATTATTGGCCTCTTCTGT
GGAACTTTTAGAAACCTCTTTAAGGAGCAACTGTCTGTATAAGTCAGCAGCTCTTGAAGT
GTACTTTGCTTCGATCTTTCCACCATCAGTCCAACCATGCTGCTTAAAGAAAGCTTGTGC
GCGGTTGTTTCCCCCATAAACCATCATCTTCAACTGTTCTGGGGTCCATGAATCCAAATT
TGTTGACCTGCAGATTACTGTCAAAATTTAGTGACAAATTCTAAAAATTCATATTCAACG
CCAACAGTAATAAAGCCTCTCAATGTGCTTTTGGGAAGTACAGAAGTTCAAGAAATGCAG
TATATGTCCGTAGTGACAATATGCTAAGTATCAGGCTAAGAAGGAAATAACTTTTTTTTT
CTGTATTCAACATGACCTGTCTGATAAACATTCCATTCACACAGGCTAAATCGACTTGGA
CAGAGCATACACCAACTTCAGAAGTGCATCTTGCATCAGAAGGTGATTTACAAAGTTCAG
TATGCAAAAGAAGACATAGTACCATGTTTCTTACAGGTTATGCTGAAACTTTTGAACACT
TGGTAATGGCATTCAACATTATGCATTTCCACTAACAACAATCTATGCCAGAATAAACTG
CAATGCCCCTATGTAAAAAATGTCCAGCGTCAAAATCACAGCTTGCCTCATCCACAAAAC
ACCGAGTCCCCATTCACCAGTAAGCCTCACATTTCTCTCACAAAGTTCGGTAGCAGTACT
TCACATGGCATGACAGGCACGAAGGAATACACAATGGACGAAATTTCAAACCCTAACCAG
GTGGGCCAAAAATCGTATTAAAAAATCCAGAATTTACACGTGCATAGATGATTCTTCTGG
AAGCACCGCGCATTACAAAGTGAGGCGCGGCGCAAAGGCAAGCATAGTGAGGAAAGGAGG
TCGGGAAATTAGACCTGACGAAGGAGACGTGGACGCCGAGGCTGCGGTGGACGGCGGAGC
AGTCGATGCAGAGGAAGACGCCGTAGGTGACGGAGGCCCAGGTGGGGTTCTTGGCGTTGC
AGTCGAAGCACATCTGCAGACCCTCACAGACAGAGAAATCAGGAGGGAGGGAGGGGCGCG
GGAGAGGGATGAAACGAGGCGGAATCGGCGGACGGAGAAAGGATGGGAAACAAAGCCCTT
CCTTGGCAATCACATCGGAGCAAAGGGAGCGGGAACCGATGACGCACGCACGGACGCACC
TTATTGTCCGATTTGGAGCGGAGCTTGCGGAAGACGGAGCTCCTGTCGGCGGCGCCGGCG
TCTGTCGCCATCGCGGCGAGCCACCAACCCGATCGGGCGCGAGCCCTCTCTTCCTCCGAA
TTGAGGAGGCGGAGGAGGAGGAGAGATGGAGATGGATGGGAGGAGGAAGTAAGAGAGAGG
AGGAGACGCCACGCACACGCACCCCGACCGAGGCGAGGCGAGGAAATGGTGCTGTGCCTT
TCTGCTTCGCACTCCACCTCCACCTCCACGTGTGCCTCCTTCAGAATCAGCACCTGCCCT
TTATCTGGGCCGGGTCGCTCTACGGGGTCTCGGCCCAGTAAGAAACTTTCAGCGAGAGTG
GCCGCCGCCCGGCCCGTGCTGCTTCCTGGTTGGTTGCAGCTTCACGCAGGATTCAGCGGC
AAGACTATCTCAGACAGCCGCCCAACCCACACCGCGTTAAAAATCAGGTCGCAGTGCGTC
GTTCGTCTGTTTTAACGCGGCGCCCAACGTTGGTTCCATCAGACGTGTTAAAATGCAGCG
CGCGTAGCTTCAGCAGGCACGAAGATGGCGTGGTGGAGAGAGTGCGGCGCGAGCGTTTGA
GTGTGCGGTGCGCGGAAGCGGACGCACCAAATACGCAGCGCTCGATGGCGATTCGGATAG
GACGTTGTACTCTATATGCCGCTCGCACGTTTATCGCGTGACCGCTAGAGCCCATTTTGC
TATTGCGCGCACTAAAAAGATCAATTTTACGGCGCGACGCTGTTTTAGCGCGGCTATTGG
AGATGCACTTGTGTCTAAATCTCAACGTGAATATAACTTCCATCTCACCAAAATCACTGT
TAAAAGTTACTCTTTGCAAAGATCAACTCATCATCTCACATGCTTACAAATGACGCATTG
GATATGCGTCAACCTGAAAGTTTGTACTTTTTGTTCGTTTATTCAAAATGTTTTAGCTCT
TGAACTATGTGTTAAAATCTCAATTCATTTACCCTACTGAATTTCTCACGTCAAGATCCT
TAAAATTAGATTCTATGTTTATAGATTTTTGATAAACTTTTTCACACAAAAACAGAATAC
ACAAAACTAATAAATGTAAAAAATCCGTAAATAGGACAAAGCCAGCAATCAAGAAAAACA
AACACAAAAAATGAAAGAAAACACCAAAGCACGGTTTACATTACTGCACTTTTTCCCTTT
TTTAAGAACAATGGTCGTGCTTCTCGGAAAAAAGATATGCTTTCAGAAGAGGCGCTTCTT
GAGGTAGCATAATTGTTTTTCAGAAAGCACAACTATGCTTCTCCAAAAACAAATATGCGA
CTTTATTTAAAACAAATATGTGTTTATCATGCAACACATATTATTTCCCTTTTCGAGAAG
CATTGCAAAAGCAGTCACATCTACAGATTTTTATCGAGAAGGACGGTCACAAAAGTAAAT
TTGTGCCTTCACTTTTTTTTTGCGAAGCATATGTGTGATTTGTAAAAAAAATCTTCAAAA
GCTAGAAAACACAGGAAAAAATAGAAAATCCAAAAAACTTATCTAAATACGAAAACTCTT
ATAGAAAAAAATACGGAAATCTAAAAGGAGTATCAGCACGCGAATGTGACGTCGGTTAGT
GGCATCACTTGATGTGGTCCGATGCTATAAAGATTACCCTTCCGAGAGCCCCAAAGGGAC
AACCCTTAAGAGGTGCTTGGTTTGGCATTGTTAACCCAAACATAATTGGTATCAGATTGT
ATCATTAACGTAAAAAAGAATGAGGAAAAATGTAAACATGTTTAGTTCATCTCAGGAAAA
GGAACCATGTGGGACGACTTGGCGCCCACATGGAGCAAATGTAATTTGGCAGTTGGATGC
AGTGTTGCACGGGGTTTGGAAAGAAGAGAGTTGGAAACATCGCGAGCTGAAACACATCAA
GGCGCACAAGCAGCAATGGTAGGCGCCCGTGCTAGCGACACTGGTCATGGTGAACGACGA
AGACGATGAGCTGAAGACGGAGACTTTGCTCAAGTGTCGCCCAACATCTTCGGGATCAAC
GGGTCGAACATGATGCACAAGGCCGTTCTCACCAACGGTGCATGTGTAACTCTTATCCAC
TCATGAACTCATCTGAGTCCAATGGCACGAGTGTTTCTCTTCTTTTGGCCATGGAGATCA
ACCATGGCGGCATGGCCATTTGAGGCTTCGCAATAGTGGTGGTAACAAGAGAGGGAGATG
GGGAGTCTGTGCTAGATGATGCCCTGACCAGTGCGGGTTTTGTTGTCGTCGATGAGACCA
TGTGCCTCCTGATAGTGCCCAACAGGAGGAGGTGGAGTTAAGGGAGAGGGAGAGAGATGG
AGAAATTTGTGGTGATGAATCTTGTTGAGAAAGGAAACCGTTTATGAAAAGAAGTTGGTG
ATCAGATTTGATCATAGACGTTATACGATTACACGGAATCTGACTACAACAAAGTTAAAA
ACAAACTAATGTAATTAGGCCCCATCGTTACGGGTTATGTTACAAATCCCGGAATCAAAC
ACTTAATTCATCTCGCTAAAGGGTTCCCCCTACGAGTAGCTCTCGTCCGACCCATTTTTG
TAGTTTTTTTCCTCGGTTTTAATCGGGTTCGTTGGTTTTCTATTCCTATTTTTGTTTTTT
TGGTTTCCTCATTAGTTTTCTTTGTTTCCTGTTTTTCTTAGTTTTTAATTGATGTTCTTC
CCTTATTACACTATTTTCACAATTTTCTTTTTTCTTTTTTTTCTTTGCTTTCCATCGGTT
TTCTTGGTTTCTTTCTTGATTCTCACTCGTTTTTTTCTTCGTATTTATTTTTATTTCTTT
GTCATTTTTCCTGTTTTTTTTTGTAACACACATATTCTTTCTTGATACATTGTTGACCAT
TTTTCAATTGCAAAATTTACATTATTTAAATGTTATGAATGCTTTCTCAAATACATGGTC
AACATTTTTCAAATACACATTGAGCATTATAGCTTATTTTTTCATATTTTATCAATTTAC
CATTTTTGTTTTCTTTGTTTTTCTTTTTTGTTGTCAGTTTTCATTGGTTTTCTTTTGTTG
ACACATGTCTTTGCTTATACACATTGAATATCTTTTAAATACATGATGTAATTTTTTTTA
AATAGATGCTCTGAACACTTTTTTGAATACATAATTGAAAAATTAAATACACGTTCAACA
TTTAGTTTGTTTTTTGTAGTTATTTTTGATTAGTTCTTCATTTTTATTCGTTTTTCTTTT
TTCTTTCTGCTTCGCACGCCACCTCCACTTGCACGCGTTGTGCCTCCTTCCTTCAGCACC
TTCCCTCTATCTTGGTTGCGTTTGTCAAGGCCGACGGGCATTCAGTATTCTGTAATTTGC
TCCTGTATCTGTTTTGGCAAATAACGCTTCAGTAATCCAACGGTTGAGGTGGCTCCTTCA
TCTACGAGCCGTCGCCACCGTTTGATCTCACCTTACCTTATTTTAGCGTTTCATGTACTA
TTACAGCTGTCGCTGAGCTCTATTTATAAACAGTCGGGCTGTGGCTGGAAAAGATTATCG
ATCATTCTGTTATCTTGCCTTGGAGTAGCGAATATACTTTATAGATGCTTAATAGATAAG
ATGGCTCTCGTTCCTTGGCCGAAACTCTAGGTACTTCGCTCGATTTACATCTTAGATCTC
CCTTGTTCAGGCTGAATTACTAGCGGGGCCTCACAAATTGGTATTGAGAGCAAGGCTTTC
CTCGGCCATAATTTTTTTTCCGTAAGAAGGAGTGATTCCCACCCAGTTTCCCTCCCGATG
CTCTGAGTCGACGCGATCCGAGCATGATCTGCTACGGCGGCGCTGGTGGCGGTGACCTGA
ACCAGGGTGGCGTTGGAGGCGGTGAAGTGTTTGGCTGCAAACCAGTAGTGAGGATGAGTT
GCTAGAGATCACTTCTCTAGCGGTAAAATTCTAGATCAATTGCTGGTTCGTGCAGTTTTG
GTGGTGTGGATCGAGAAAGCGGCAGGCTCTGGGGAAGAGGGCCTACAGGAGGTGCAGTTT
TGGTTACCGAAAGAATTCTCGCAGTAAAATCCCCTCTCTCTTTTCCAGATCAAGGCGACG
GGGCATCCAAAGGTGATTGATGATACGGATCTACAGGAGGTGTTGCCTTTGCGTGATGAT
TTCGGTGTGTTGCAGAAGGATAACTTGTTGACACGTTCTGAAGTATCTAAACTGTAGGCA
AATGTGCAGTCTATTGGTTCCAAGCAGGAGGGGGGTTATCTTAGCAAGTTGGAGGTATTG
AGAAAGCAGTGCTTGATCTCGGCCAGCACTTATCAGCAATTAGCTCTGTCTTAAAGAACC
TGGCTAGCCGAATCAAGGAGAAGCTCATCAACAAAGCTCTAATCAAGTAGTAAAGTCTCC
AACATTACAACAAGAACAACTAAATGATCAATAGAGTAGTGCTGAGTTACTTAGAAAACA
CTTGGAGTTAGAGAAGGAAAAAAACAAGAATGGCAGAAGAATTGCAACTGCAAAAATCTG
CCTCTCATTCGAGTAAACAGACAAACACTTCCTCCTGGGTATGATAAAAATTTTTTTGAA
AGAAAGGGGTTTCCCCCCCCCCCCTGCCCCATTTTATTGAAGCAGAGCACACAAACAACA
CCGCATCGAAACATGATACGTCTCTGAGCCTCAGCCTGGACACGGTCCGGTCCCGGTCCG
GTCCGACG