Map Locations of contig_1558751 (9373 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1558751

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10281 1 1186 bp MLOC_10281.1 Available Available None
MLOC_10280 3 1490 bp MLOC_10280.2 Available Available LOC_Os10g41260.1, FRAME:+3, EVALUE:1e-68, 13110.m03844 protein MYB family transcription factor, putative, expressed





CDS Structure of MLOC_10281






CDS Structure of MLOC_10280






Contig Sequence (9373 bp)

>contig_1558751 9373 assembly3_WGSMorex_rbca.fasta
GCTTCACCTATATCTTTTGAGCTAAGCAATTGCTCTAGTGCTTCAATTATATCTTTTAGA
GCACGGTGGCATATAGATTTTATAGAAATAACTGCACTCTCTTTCTTCACTTAAATTTGT
CTGAGAGTTTTGTAAATGGTGAAGGTAATTTGCATGAGTTATAAGACTAGTCCAAAAATA
ATGGGTATTCAAGGAGTGCATAATCAAAACCTTCATGTAGCTTATAAAAAAGAAATTGTG
GGTTAATGATATTGATGTGGCAATATGAAAGGGCGTGAGTGCATGGTTGTTGGTTAGTAG
AAATAACGATAATTAAAGGGTGTTACCTTGTTTTTTATCTAAATATTGGTTATGGCATGN
TGATGATGTGTGAGCATTCTTATTCATCATTAAAATCCTAGTGTTGTTTAGGTCGGGCGC
GCGTGATGGTTAACTCCTACCAACCTCCTCCCAGGGGCATGCAAGTAGTGTTATGCTTCG
AAAAAGCTAATAAAGCTTTGCAATAAGTATGTGAGTTATTTATGACTAATGTGAATCTAT
GGATGTACGCACTCTCACCTCCTCNNNNNNNNNNNCCTCTTCGGTACCATGCATTGCACA
TTTTCACCTCGAAGATCGGTGCAAACTTCACCGATGCATCCAAACCCCGCGACATGATAT
GCTCTGTTGAACATAATCCACCTAATATCTTCCTCAAAACAGCCACCANNNNNNNNNNNN
NNNNNNNNNNNNNAGCCATTCCGAGATATATTGCATGCATCTTCCACTATTACCCCATAT
GACTAGTACACTCATTGTCANNNNNNNNNNNNNNNNNATGTAGCTAACATAGTATTTGTG
GAAAATCCACTGTTCACCATTGTTTAAATGTTATGCTAGATCATTGCAGCCAGAGGCATT
TATATAGTCATATTGTTTAGTAGTTTTCATATCCAGTTGTAAGTAGATAGAAGTGTGATG
TTTTTCATTGTTAGGGCACTATCTTAGTGACGAAATGATGATGGGGAAAATGATTCCCCC
ACAAGTCGGGATGAGACTCCTGATAAAAAAATAAATTAAAAAAAGTAAAAAATGAGAGAT
AAAGAGAGAAGGGACAGTGCTACTACCTCTTTTTCCACACATGTGTTTCAAAGTAACACC
ATGTTTTTCATCTAGAGAGTCTCATGTTTTGTCATTTTCATGTGCTAGTGGGAATTTGTC
ATTAAAGAACTTGGCTTGTATATTCCAATGATGGGTTCCTCAAATGCCCGAGGTCTTCAC
GAGCAAGCAAGTTGGATGCACATCCAGTTAGTTTCACTTGAGATTTCATACACTTATAGC
TNNNNNNNNNNNNNNNNNNNGCAATCCCTACTCCTTGCATTGATAAAGATTGATGGGTAT
CTACATGACACATTGATCCGTCTAGTTGATGCGAGACTTTCTTCTCCACTTTAAACTCTT
TAAAACCAACCACCATATTATATTCCACATATATGCTATGTCTATGGTTCACGCACATGT
ACTAAGTGAGGTATAAAAATCTGAAGCATGTGAAAAAGCGCGATCCAGTTGCTTGGATTA
ACACCGTGGTGCTTGAAATTTGTATTTATGTGGTGAAGACGGAGCCATGCCATGCTAATA
TAATAAAATGAATAGGGGGTAAAAATTCTTTAAGGTTCGTATATTTTGAAAATAGATTAT
TATGTTACTTACGTTTATGGATATTACTATGTTAATGTTTGTTCATTCATCATGTATTAA
TGATCATACATGAAAAAGATTACATGTTGGGTAGCTTCTACTGGGATTTTTTTGGTCGAT
CTATACCCATTGGTCCATTATATGGTGGTGATCCTCTTTACTTTGTTCGCTGAATAAGCT
TGATCATGGAGTGATAGTGTATATTGGAACATACAAGACTCATGTGGAATCAGTTAAATT
GATATAAAATACATTTGTTGCATGCTCCATTAGTGTTTTATACTTGAAACCTCGCTTGTC
AGTTTTAGTAAGTATTACATCATCAAAGTTGTTTTATTCATGCTATTGGTGACTGCATAC
TTTCTCCTAATAGTTTTATTACTTGTTGTATGCAGGCTGATTGGAGCCTCTTTTTTTTTA
AACTATTTTTTGATATCACGTGCTCATTGATATGTCTAAGAACATGCAGATCATCATTTC
ACTATCTTTGCCCCCAAGGTATGTCATCTCTTTGGCCTGTTCCAGCATTGTCTTCTTTGT
TCCTCATTATAAAAATTGATGCATGCGCCTTGTTCTAAAGTGGGAAATCACCGTTATCTT
GTACTATCCATCTGTTGTGTTAACTTGCATTGTGCTGGTACTTATCATTTGTAAAATATA
TCTCAGTTTTCGTTGTTATGGGAATGTTATATGCATGGTTCCCTGTTAAATCTAAAGTTC
TACAAGAAATTTTCATTGTTATGAGAATTTTATATGCACGAATTCACTCGATTATGTTTC
TAACTTCTCATAATTTATTATTTGTGGATGTTGGCCTTCATTCTTTAAAAGTTGGGTGTA
CAGGAGCTTTAGGAAGAAGAATCCCGAAGAAAACCCACTCCCACCAATGCATTTTAGCTC
ACTAGAGCTAGTTGTGTGTATATTTAGTTGTATTTTTTAGGTGAATACCTGATTTGTATG
ATGTATGATTGTAATGTACTTTGCTTGGTTGCTGTATGAAATATTATGCCTTATTAGCTC
TTTTTTAAATCAATTTATCTAATTGCATACATACAGTTTCCATTTGACTAGTGGGCCCTA
CTTTAAAATGGAAAAAAACTAACAAGTGGGCTGGAAAAAGGCTAAGGCCCAAAAAAATAT
GGCCTGTAAAAGGCCGTGACCCAAAAATAAAAGGTTGTTGGGCTTGGCCCATGTAGCTGA
CCAAAATTGTAAGGAAAAAAACAAAAATAGGCTGAATTAATGGGCTTGGCCCATATAGAC
ACCGAATTGGACCGGGCCAAATCTAATCAACGACCTTTTCATTTGATCGTAATTTTGCCA
CGTCGGATCCGGCGTGGTGTGGACACATTGCGAGCGACCAAAAAGTTGGTCGTAGAACCA
ACGACCTTTCATTTTGGTCGTTATAGTTCATTAGAGACGCTCAACTTTTAACCAACTGTT
TTTGGTCACAAAAAGGTCGTAAATGAAAAATAACTACCATTCAGTGACCAATATTGATGG
TCGCAAGTTAGCATATTTCTTGTAGTGTATTTGAGATTCGATTTCATCCAACAATGGCTT
CATCTCGATTTATTGGTACAAAGTGGACGCCAACAACATTTATCAAACAAGAATTACTAA
TGAGAATGTGACAAACAAAACTAGCAATGCAAATGTTGACAAAACGAAGGAATTCAACTT
GCATGCTTATTGACACCGATCCCACTTTGATTTCGGCCAAGCACGGAAGTATAGTGGCCG
ACATAATTGTTCACCTTATCTTGGATGATGGGCCATCTATGTTGGAGAGAGGCCACATGT
GGGTGGTATGGACATGCTTCGGCTCCACATATTTCTTGTGTTCATGGTACTGATTGTGGA
TCTCTTCACAATATTTGTTTCCCTTTTGCCCATGCCACATATATGGTCCATGCTTGTGTT
GTGAATGTCTGACCTCTTGCCTTGGGTATCCTTGGTAATTTTTCTTGGTTGTGTGTGATG
TTTCCCCAACATCATAGGTAGGACCATTGGTATCCCTCAAATCATATTATGTAGGCTTTT
GACCATCATTGATCATGTTTTTCATGAAATTACCCTAAAATGATCATGATCCCAAATAAT
CTAATACTATATGCAACAAACTAATTAAATAACATATGCAATAATGTAGCGAAAGATGAA
AGAACAAAATGAAGGGAAAAATGAACCGTGTCATGCTCCGACATTTCATCAAATAAGACC
TAAGCACAAGACGTCGGTGTTGTTCGTGCTTGTGTGTGCCCGTTGGAGTTTTGGCGAGAC
ACACACCATCTTCGACGGCTCCGGATGCATTTGTCCATCCAAAATTACCCATTCAGACGT
TGGATCATTGATGCACATGGCCTGCCGATGGCAGCTTCTATGTCACCTTCGGTGCGGCCG
CGTTGGGGATGTTGGCGGAAGGACGGACACACACGAGGCGTGTGGTCGCATTGGAGGATA
CACTTTGACATCGATGTCCACAACCTCATTGGCCTCAAAATCCTTCGTTGTTGCTTCCTG
CTTGCTATGGCGGTGAGGGCAAGGCTAGCTGAAATGCGAGAAATGAAGGACGAACACAAG
ATGAGGGCACTCAGTTTGGTAGTTTTGGTCAATTTGGTGAAATTTGAGGTGGATCCATGT
GTCTGATCCGACCTGGCGGATGCGCCCAGGCGCGTTTGGGCCTCCCCATATCTGCCCCAT
ATATGGTTTGCATATGAGGAGTGTCGATTAGTCCATAGAATAGGGCGAGTTCAAGGGGGT
CGACTGGGTCACGATTCAGTGACCGGTCACTGATCGGAGTGTCTACCCAGATGTATAAGG
TGCATTTCAGGAGCACGGCTATAAATACTCATGAATGCTGATCAGACCGATCATATAAAA
CCGAGCGTATGTATTGATGACTAGAGTCATGAAACTTCAAAATGGTCGAAGTTGTCACAT
GCATCTCGTTATTATAGAAAAGCCCATCTCCTACAAGGAAGTCATCTAACTTAATGAGGC
ATCATATATATCAAACCGGGTGTTGAATATAGTCAACCACCACTAAACAAACAAACCAAT
GGTTTGTTCTAATAAAACTTGTGATTTTGCATAGCTACAACTTGTGGCTTTTCAATGTAT
TTGCTAGCACGGGATCGCCTAAACTTGCGTTAATTTCAGGTGATATTTGTAGACATATTA
TCTACTTTATGATACATATATTTATTTGTTATCAGAATGACACATAAACTGGTTTGAAGG
TGTCAAAAAGGAGTTGAAGGAGGTGGCTAAGTCACACAGGTTAGGAACAAATACATAGGT
TGGGCAGCTGGCTAAGAGATGAGGGAGGAGATATAAGCTTATTTTCGTTACTCGAGGTAG
AGTTTGTGATGGGGGTACATGTGGAGGTGGCAAGAGAGGTACGCCGAAGGGTGGGTCGGC
TATGAGAAGGACAACAATAGCAATGTTGACGGCCAATAGACGATGGGAAAATAAAAAGTG
ATGATGGTTATGTATATGATGGATAGGCGGAAAAATTAAAACAAGAGTAGTGATGTACAA
TGCACGGAGAATATGAGACTCTCTCGGCCTTGAGATGCTACCATGCTACGAGCTCCTAGA
AACTGTTGGATCTCAAATCCAATGGCTCCCAGAACATTTTGCAAAGAAATCCCTTAGAAG
TTCAAGAATTACGCACGAATAGACTACGTTAGATATGATATCCAACGGTCCACGAGTGTG
TATCACCTAAAACTTCCTCCTACAATGCAGTATGACATGGCGGCAGCGGGCGTGGCAAAG
GGGTGGTCCATCCTACAATTTCTCCATAGCGTAGATAGTTTAAAATAAATAAAAAATTGA
AAACGAGGCAGGAGATTAAGAAGTGAAGCATTTACGGTTGGCTAAAGTATGAGTGTTTTT
ATTTTCTTGAATTAAAAGCCTGCTCCAGAAAGTAAGTTGTGGAGAAAAAAAGAAGCTGGA
CGCGCTTATAAATGGAGAACGAGGGGAGACGGTAGCAGGTGCCGGTAAGTAGGCAGTGAG
GACAAAGCCACCCACCCACCGATCGAGAGTCAGTCTCTCCCGGCCCTCCCTCCCCTCGTG
CGGTAGCCTCCAAATCATCCAACGTCCAATCCACTTCCAACAAGATACCGCCACCATCCT
CCGCCTGATCCGACCTCTTCCGTCAGCGACAGCGACCCCGCAACGCCCGGCTCCGTCGGG
ATGGAGGAGGAGGGCGGCGCGAGGAAGGCGGTGCTCTTCAGGCTGTTCGGCGTCGAGGTC
CGCGGAGCGGAGGAGGAGGAGGAGGATGACGCGGAGCCCATGGAGCTCAAGAAGAGCACC
AGCATGCCCAACCTCGCCTCCATCGGCCCGATTCTACCGCGCGGCGAGGCCAGCGCCAGC
CACGACAAGGGCTACGCCTCCGACGACGGCGAGCTGGCGTCCACGCCGCAGCTCAAGCGC
CGCCGCCGCAAGGCCCAGGAGCGCAAGAAAGGTAACAGCTTGATCAACCTCCATCTGGAT
CACGCAAGGTTTCTTGGTTCTTCTACCCTCCTGTCTGCCTTGTGCAACCCGTAGAGAGCT
CTACTGTTCCATTCCTTCGTGCGGTGTACAGATTCCGGCCGTTTTTTGGGCATAATCATC
TGATCGCTTAACTAATCTAGTGATTTGTGAGTGGAAATTCCGTCCTGGATCAAAGGAATT
AAGAAACTGACTTGGAGCTATCATGACCTTTATGTATCATCCAATCCAAGTGTACTAGTC
GATGGATCTTACGATCCCACCTGAACAACAATTTGATTAGTCGCTCCGTGTTGCTTCCTA
GTAATAGTAGTTCGTACCATGAATCATCATGGCGCAAGTGGTTGATTGAGATGATATTCT
GGTTCAGGGATTCCGTGGACCGAGGAGGAGCACAGGAAGTTCCTGGAGGGTCTGAAGCAG
CTGGGCAAGGGGGACTGGAGAGGCATCTCCAAGAACTTCGTCACCACCAGGACGGCCACG
CAGGTGGCCAGCCACGCCCAGAAGTACTTCCTCCGGCAGACCAACCCCGGCAAGAAGAAG
CGCCGGGCCAGCCTCTTCGACGTCGGCATCCCCGCCGGCCACGGCTACGACGATCAGGTG
CTCGATCCGGTCCAGTCCAGTTCGCGCCAAGTTAATCAAAACATCCATCGGATCCAGCAC
CTAACTTATGCACTCCGCTGAATTTCAAATTGGTTTTCAGCTGCCGAGTCCTCACAGTGT
TGGAACCAAGCTTGCTCCTGCCGAGAAGATACTCCACACCGACCACGGCGACGTGCCGGT
AAATTCCACGCAACTCGTGTTTCATTTCGTTTCCTGCTAGAACTAGATCGGGTTTCCATT
TTGTCTGAGTACTGACTGAATCCTGAACCTCGCCTCAGCTACCAAGTTATTCTGAAGTCA
TCAGGGGCAACAACAACAACAACACCCAGATGCAGGTAAAGCCATCTAGCACCTTTAGTT
GCATCTCAGAACATATCTGATGTAGTCACAACAGTGTGAGCAAAAGCTTTACAGCAACCG
GGTCCTTTCTTCTGGCAGGCTGATGAACTAACTGACCATGCGAAGAAGAGATCAAAGTTC
CCCACCGGAATGTCGCTGACCGCCATGGCTGCCTCCGGGCTTGAGCTGGCAATGTCTTCC
TCTCCCAGCAGCATCCTGGAGCTCAGCATCGGGCCTCCTCGCCACTGCGCGGTCGATGCC
ATCAAGGTGCTGTGATTGATCCCCGGCTGCCGGGCTTGGCCGAAAGGATTTACCTGGTGT
CCCTGTTCTTGTTGCCGTGCTAACCTTGTTGTCCGTTCGATCGTCGTAGTAGCTTCTTCA
GCTAGCGTATGGAGTAAAATACATAAGAATTGTCTGCTTTGGTACTACAAGTTGGTGAAG
GGAAACCAGAGAGGGGTTATGTAGTAGATTTGTTTGTACTGTATGGTTACCAGATTTAAT
TAATGTTATATCGGTGCTTGCATGGTGATTTAGTAAACTAATAATGTCATCAAGGCAAGG
GGGTGCAGGAATTGGAGGTGGCGTTGGAAGGCATCGCGCTCATGAATTGAAAATCACACG
GGTGGGGTTGGTTTCTTGTTGCCATCTGAGGAGGCAGCCATGACAGGAGAGGAGAGGACG
GCTCCCTTCTTTTTGCCTGTGTGTGTGTGGCTCTGTCCGCTCGGAGCTTCCAATGGCTTC
AATAATTGGGCTCTGCCTGCATTTCGCTCTCCATGTCCAGGTCCACTCACTAATCCGCCC
ATGGCGTGGCGACATCAATCGGGCGTGCTACGAGCATGCTGTATCCTCCTGTCCCCTGTC
AGTTGTGATGCTAGCAGAGGGAAGCGGGCAGAAGCAACGAGCGAAACCGTGCCTAATTCA
GAGTTTTTGTTGGTGTCGGATCATGTTGGCTGCACGAACCGTGGATAGCTGACATGTATG
TGGCGTGAGTTCCTCTCCTCGCGATGATCACGATTGCAAAACCTCGTCCGTTGGTTCCGA
AGCAAAAGCCTTTCCACCCGGTGAAAGTTCAGAGAAAACTGATGGGAATCGACAAGATTA
TCTCACGGCACTCGCACGCAAGCCGGCTTGGAATTTTGCGAGTGCACGGACATATGTGAT
ATCTCACATCATGTACATGCTCCTAGTCCACATCTACAGCGGCGTGGTGGGGGAAAGGGA
GGAAGGATGGCTGTGATGGAATCGCGGATAGGATATGTGGATATCTCGATAGGGTGACGG
GTGGCCCAAATTATTGACCTCCTTTACCAAAGATGCACGCACGCACGCACGCACTCGTGG
CTCCCAACTGAACTGAGCGAGCTCTGCTGACTGCTGCTGTTGATGTTGCCTGGCCTTTTC
ACGGTCGCGCCCCACCAACGATTGCCGGTGGGAGGTCGACGACAAGCTCGCGGCAAAAGG
AGAGGAGGATAGATAAACAAATGGCGGCAAGGATCATGAGATAGCACCACTTTCTCGGGA
TTGGGAGATATCACCTTTGACAACTAGGAAATGATAATGTCGATGTTTTTTTCTCAACAA
CTGGCGAAAAGGATTATGTGGAGTCTCTTTCTCCCCTGGCGGCCTGCCACCGTTCGTTTG
GTGAAAAACAACTTGTTTTCCTTCTTTTGAAGCGCCGTTCCTTGGTGAAAAATAACTTTT
TTTTTTCTTTTGAAGGGGGAGGAAGAAATACATCAAGTGAACCCGGGGTATACCATCCGC
GGATCCACATGGTCTGGCCCTGCTTTGCCTATCAAATATCTACCCCAGATAACCCTGTTG
TAGGCATTCGCACGAGCTGATTAGGGATGGCGTCGGGAGTGACAGACAAGAGGTTGGACG
GGAGCCAGGGGTGCGGCCAACTCCGGTGACACCACATCGCCAAGCGCCGAATGGAGCCAC
CGCTCGACGGTGATGCCTCGGCGGCCAGTGATGGTGCAGCGGCGATTTCAGTAGGCGGCA
GGAGAACGGACGAAATCGACAACGTTTCGAGCTTCGGCAAGGGCGGACGGCGTCGCGGTG
AACGTGTCAAGCTGGCGGAATGGCTGCGTGCATGGGATTTTTTCACTGTTTTGATCCTTA
GGACGTAAGTTGATCACGTAATGAACTTGGTTCGAAAGTATTTCACGTTTTGACCCTTTT
GAAAACGCCACGCACCGTGGCGTTGCAGCCCTGTTAAGAAACGCCATTCTACTGGACGTT
GCGGGCCTCGTGT