Map Locations of contig_1558640 (6493 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1558640

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10219 3 3737 bp AK372211 Available Available None





CDS Structure of MLOC_10219






Contig Sequence (6493 bp)

>contig_1558640 6493 assembly3_WGSMorex_rbca.fasta
CATCACAATGTTAGGTCTTCGTGTGCGTAGGAANNNNNNNNNTTCCCATGCAACGTTTCC
CAACAATAGTTCACTTCACAAAGGGTACAAGTGTCTCCATATTCCGTCTAACCATGTTTA
CATCTCTCGCGATGTTGTGTTTGACGAGAATGTTTTTCCGTTTTCTTCTTTTTCACCAGC
CCTTGGTCCTCCGTCATCATCCTCGCCTTCCACCCCTCCACTGCCTGCTCAATTTGTTGA
TATTGCATACTCTCCTGCGTTGTCGCCTAATCATGCTGCAGCTACAGGTCGTAGAGCTCA
TCTTGAGTTGCTGGAGGAATCGAAGCAGTCGGCTGTCCCTGATGAGAACAGCGGTTCTGT
GCATGTTGCATGCACGTCCTAGCCGCTCTCACCTCTCGTTGCACAGCTTTCCCATGTGTA
GGATTCAGCCGCACCTCCGACACCAGTCCCACCAGCGCCGGCTATGTCTGAGCCGGGTCA
CCTCGTGACGCCCACCCTGGCTTCGCCTACCACCTCGCCTGGACTGGCGTCTCCTCAGGC
GTCCTCGAGCTCGTCCTCGCCTCTATCAGGAGAGGTTGCGTCTCCTCTCGGGTCTAGCAT
CGTCGGCTTGAACGTCACCTGCGGCTGTAAAACCAGCTGTGGCTGCACCACAACCTGTGG
CTGCACCACCAGATGTGGCTGCTCCTCGCCCACATACACGCAGCCGGTCCGGCGTTGTCT
GTCCCAAGAAACACACAAATGGGACTGTTGCTTGGCTCATAGCTTGTGTGACACGGTTAC
AAGAAGACCCCTCTGCTGAACCATGACACTTTCAGGCTGCTCTTGGTATTCCTCACTGGC
GTCATGCCATGGAGCAAGAGTTTCAAGCATTATTGGTGAAAGGTACTTGGCAGTTAGTTC
CTCCGGTCTCTGCTGTGATGTCATTGACTCCAAGTGGGTCTTCAAAGTTAAGAGGCATGC
TGACGGTTCTATTGAATGCTAGAAGGCACGGCTAGTGGCGAAAGGGTTCAAACAACGGTA
TGGTCTTGACTATGAGGACACCTTTAGCCCGGTTGTCAAACCTACTACCATTCGGCTTCT
GCTGTTCTTGGCTGTTACTCAAGGCTGGTTTCTTCGCCAACTGGATGTTCGGAATGCTTT
TCTTCATGGTGTTCTGGATGAGGAGGTTTACATGTGCCAGCCCCGAGGGTTTGTTGACCC
TGCTCGCCCTCATCATCTGTGCCGCTTGGTCAAGGCGCTATATGGGCTGAAGCAGTCTCC
TCGTGCATGGCATGCCAGGCTTGGCTCCGTTCTTCGGGCCCTTGGTTTTGTTCCATCAAA
TGCTGACACATCGCTCTTTCTCCTACATCGGTCTGAGGTAACAATGTATCTACTGGTCTA
TGTTGATGACATTATCCTCATTAGCTCCTCCGATGTTGTTGCTGATCGGTTTATTTCTTC
CTTGAGTGGTGATTTTGCGGTGAAAGATCTAGGCACTTTGCATTACTTCCTTGGGTTGAA
GGTTTCTCGCTTTTCTGCTGGCCAGACACTCTCACAGCATAAGTACTCTTTGGACTTGTT
GCGACGAGAAGGTATGTCGAAGTGCAAACATGCCTCCACTCTGATGTCTGCCACTGATCG
TTTGTCTGCATTTGATGACGATCCTCTCAGTTTTGAAGATGCCACTGAGTATCGCAGTGT
TGTTGGTGGTTTGCAGTATCTGACTATCATTCGGCCGGACATCTCCTATGCAATTAATCG
GGTGTGTCAGTTCCTTCATGCTCCCATGACTTCTCATTGGACAGTCGTGAAGCGCATCCT
CCTATATGTTTGCCTTACTGCATCCTACGGTTTGCTTCTTCAGCGTGCGTCGTCTGCAGA
GCTCTCTGCATTCTCAGATGTCGATTGGGCTGGTAACCCAAATGATTGGCGATCCACGGG
GGGACATGTTGTATTCTTTGGTCTTAATTTGATTGCATGGACTGCTCGTAAATAAGCTAC
GGTGTCTCGGAGTAGTACTGAAGCTGAGTACAAAGCTGTTGCAAATGCTACAGCTGAGAT
CATATGGGTGTAGTCCTTGTTGAGAGAGTTGGGAGTTCATCAAGCTCAGTCGACTGTCCT
TTGGTGTGATAACATTGGTGCTACTTATCTATCATCTAATCCAGTGTTTCATGCTGGAAC
AAAACACATCGAAGTTGACTATCACTTTATGCGGGAACGTGTTGCAGAGAAGCTACTTCA
ATCAAGTTTATCTCCTTCAAAGATCAACTTGCTGACATCTTCACGAAGCCTCTACCACAA
CCTCAGTTTGTAGGGTGTAGGCACAATCTTAAGTATCTCAGGGCATAGTTAAAATTAAGA
GAGGGTAGGGCATAGTTAAGATTGAGAGAGGGTGTTAGACTGTATTTACATGTAGCTCAT
GTATAGTCTTGTACTCCCTCCGTCCCAAAATAACTGTCGACTTTGTACTAACTCTAGTAC
AAAATTATATTAAGGTTAAGACACTTGTTTTGAGACGGAGGGAGTATATTGTATTGTACA
CCCTGATGTACCCCTTTATATATATATATATATGAGATAGTCACACCTCAAGAAGGTGTT
TAGCAGTTCCCAAAACCCTAAGTCTAATACCATATATTTGCAGCACCACATGTACGATCA
TCATATATTGGCAAAGAAATCAACAATAGTTACAGTCAAAATCTATACACTTGCCAATAT
ATATTGATCGAAGAAGGCAGTGCATCATCAACTAGTGTAGCCTACCAGCAATCAACTAGT
GTAGACTACAACTTATTTAGTTCGCAACCAGGCTTATAACGCTATACTACCGTGGACTAG
CTACCAACAATGACGCGATCCATCACAGTATATACAGATATTGTCATCCATTCATCGCCA
CTCCAGAATTATTCTCGAGGGGAGCAGCGGTCCAAAACCGCCGTCTTCCTTCGCCGCCGT
CGCTGCTGCTTTGCCGTCCTCACAGTCACAGGCCACTAGCCTAAGAGCAGAGTTGCCCGC
AGGCTTACTGTGCTTGAGCTTCAGCTCCTCGAGGCTCCTGGCGAACACCTGCTCCAGCCA
GGCCTGCAGAGGGCGCCGCCTGTCCTCCGATGCCCATGACGCCGCAAGCATTTGCTCCAT
CGCGCCATCGCCGACCTCCAGCGTGCTGCCCGGGCCCATGATGTTGCCGAGCACGTTGCT
CAGCTCCTGCAGGATGTCGTTGGCGAGTTTCCCAAAGTCGAACGCCTTGAATTCGATCGC
TCTGTCGACCAAACCCAGGAGGCTGTCGATGGACTCATCTGGACTGTCGTTGCTGCTGCT
GTCGTCGCCGTCAGCGTCACTGGATCCGTCCTCGCCGACGGGGAGGTTCAGGTCGAACGG
CACACTTGAGGTTCTGTGCGGCCGCTTGGGATTGCTCGGTGATTCTAGCAGCTTTTCACG
GTCGTCAGAAATGTCAAGCTTCCGCTTACTGACGCAACCAGAGTACACGGAAGTTTGAAT
TTTGGTGAGAGGGTGACTTGGGGAAGCTGCCACCTTGCTGCTACTAGGAGAGCCTCTGCT
GGTGATCACCGTGCCTGATTCTATCAAGATCTTGAGTTGTTGTCCTCTAGCAGCCAGGAT
CTTCTCTTCGGAGAAGATATGCCCCTCTTCCACCCCAACCGAGGCATTTTTGCTGCATCG
CGCCAATCTTGTTGACAGTATTACTATGGAGTCATTAATGGCAACTTCCTTGCCGCGCAT
GTCCCGGAATCTTCCGGTGTCAACGGCATGGGAGAGGCTGTCCTGAACGAGGCAGTCAGC
TTTATCAATGTTGTCGAGGAAGATGACACAGCGCCGTTTCTTGCTCAACTCCTCGACGAT
GCAATCTATGCCAGTCTTTCCTCTGAAACTTGAGCCGCCCCAGTCCTGGAGGCTCAGGTC
CAGATGAATGAAGCTGTCTTGGCTGCCGTGCACGAGCTCTGCCAGCGCCACGGCAACTCT
CCGCTTGGCCACGCTGTCGAAACCATGAAAGCTGAACCAGATGTCGTTCTTCCTGCTTGC
GCCGCGGCGCCTCTCTGTTGACTGGCAGCCAACAATGGATCCACAGATAGCACTCAGGGC
TTCCTCCTGCCTTCCAACTACCTTGAACAGGCGTTCCACGAGTAGCTTGTAGTCGCTCAA
ATCAGAACCTTGTGCTGCAAGCTGTGAGGGCTTTTGCCTCCATTGGCCAAAGGCAGACAC
GCCTCCTGAAGCTGGTGAATGCAAAGCACTAGGTGATGTTTGCCCCATATTTGTGGAACT
CCTGGAGCTGTAAGGTTGTGCAAAGGGCTGTGGGGGCTCCATATTCAAATCATCAACCTT
ATTGGGTGTCAGGTGGGTAGACTTCTCTGCATCCACTGCATGTTTCCAGCTCACAGAACT
TGTACCCTTGGAAGAAGATCCACGAGGCGTGCTCAACACCAAGTCCGTTGCCACGGATGC
AGCAGCGGATGGCGACATGTGATCTTCGCGATCATGGCAGCTTGACAAGTGTTCTTGTCG
CAACTGTGCATGCCTGTCTTGAAATTGCTCATCACCCTTTGAATGCCTCCCTTGAAGATT
CAACACAAGGCCTTCGTTCCTTTGGTTGGAGATAGATGGAGGTGAAACACTCTTTTTGGG
GGTTGCATTCGTTTGAGTAGCAGACACTGCAGAAGGCCTAATAACATCCCTTTGAAGTGT
AACTGACTCGGAACCTTTGCTCAGAATTGTTGCTCTTTCTGTGTCAACTGGAACAGCAGC
ATAATTTGGAAATAACTGGTAAGGACCTGTGTTGATCCTCTGGGATCCTTGGTGGAGCCG
CAGGCAGTACTCGTTCCACTTCTTCTGCAGATTCAATATTTTTGACTTCAACACCATCTG
ATCATCTCTAACCTGCACTGAAGGAAAACTGCACATCTTTTATACCAATGAGATGCAAAA
TTTATCCATGTGTTTAACATGCTGAGCATGGGCATTTGTTGTTTTACTAAAAGCCATTTC
AAAAGACATAAATAGATTCACACCTTGATTACATCAAGTCCATTGTTAAGACCCATCATG
CTGCCATTCTGAAGCAGGGAAGGCAGACCTCCCTGGTCAGCTGTAATGCCACTCCCTTTA
ACGATTGTTGTGACTTCTTGCTCACATCTATCATTGCACTGTTGACACCGGAGCGTCTGG
GGGCCAGGATGCACTGCGAGGCTGTTAGAGTCGTAGGTATTGTTGACAAGTCCACCAAAA
GGACTAAACGATTCCACCAAGCTACAAATTACAAGATCAAAACTGTTGGGTCGAGTTGAT
GAAAGAAAGTGGAATACGTGACACTGTGACAGAAGCCAGACCAAGTACAATGAACTATTT
CTGACTCCCCAGCAACTTAAGTATATCTAGTCATACCATTGCTACAATTATGACCCCAGT
TATGGTTGTGCATTAGAATTTCCAATCAGAGAACAAATTTTCTGCACTAGATGGACATCT
ACTTCTTTTCCTCATGGAAATGCATTTCTTTTACATGCAGGACCTCTCTTATTCACTTGT
TTTTTTTACTTTCTCTTTAACCTTTTCATCAAGCTGTTATAAATGGCAAGTGCATGGAAC
TTATGGCGATAAAACGTCTACTATATTGCCATATGCAGTCTATATGTAGCAAAAAACATC
CAAAGGATCAAATGTCTCTCAAATGAATATGAGAAGTTCAATTTGAAAAATCAGCAAGCA
AAATTTATCAGATATGTAACGGAACAAACAGCGAGCTAAGGAATTGCTGAAGAATAGGGC
TAGTAACCATCAAGATAAAAGTAAAAAGAATATAGGTCCGAATGTCTGGAACGACTAGAC
ATCAGAATTAGCAACCCAGATGAAGTAAGTGCACATACAGAATCTTTCCTGTGATAATCA
AGTTTAATCAATTATGTGTCCTAAACAATATATAGTGCGTGGAAACACTCTGGATCTTAA
GGGCAACTAGTCAATGATAAATTATCATTGTATATTTCAGATAAGAAGTTCGTGCACTCT
TGGCTCTGATCAGTAGACCCCAGGTTTTTTTTTTTTGAGACAAAGTACACCCCAGGTGGG
GCTGCGTTCCTCCTTTTCCAAAAAAATCAGTACACCCCAGCCCCCAGGAGTATTTTTTAT
ACTATCTGAATTCAAGATGTAGTAATTCCGAAATACATTTTAAAAAAAATCAGGTCTCGT
TTTCCCCTGTCACTAAAGGTTGGAGAACTGAACCATAACGATGGAACAATCACTATAACA
CAGATGCAGTCTTCGGTACTTCATAATTCAAATACACATTGACCACTTAAGTAAGCATAT
CCGGGCCAATCTTCACAAAAAATTATACACCACGGGGCAAGTAAAACCCACTATAAACTG
TTGGCAGGAGAACATCGTTCTACTACCTTTTTTTTTTCTAAAGGAGGTTAAAACCCCCGG
CCTATGCATCAATCGATGCATACAACCATCTTTATTTGTTATTTAACATAGGTCTAACAA
GAACATACATCAA