Contig Data
morexGenes
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Map Locations of contig_1558634 (6149 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1558634

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10214 1 3356 bp AK370348 Available Available None
MLOC_10216 1 498 bp MLOC_10216.1 Available Available None
MLOC_10215 1 1818 bp MLOC_10215.1 Available Available None





CDS Structure of MLOC_10214






CDS Structure of MLOC_10216






CDS Structure of MLOC_10215






Contig Sequence (6149 bp)

>contig_1558634 6149 assembly3_WGSMorex_rbca.fasta
CCCTCCCTCCCTCCCTCCCTCCATCGTCTCGTCCTACTCACACTCCACCTCCCCTCTCTC
CCTCCCTCGCCGCGCCGTGCTCCCTCCACTCCACTCCACTCCACTCCGCTCCGCTCCATC
GCCCCAGGGCGCACACGGGATCGGGCGCAGATCTGCGCCCCACCTCCCCACGCGCTCGCT
TCCCACTCCCCGCCTCCCCGCGCCAGGCGGCCTGGCTTAATTCCGTTACCAATGCGCTCT
GGGTAGGGCATGAGAGGCACTGGCGGCGGCTTGCCGGCGGACCAATTCACATCGGGATGG
ACCTCAGCGTCGCCGCCGCCGTCGAGCTCGGCAAGCGGGGCCGCACCGAGGACCAGGACC
AGGACCAGGGCCACGGGGACGCCAAGCGGCTGGCGCTCGTGCCGTGGCCGCCGCACCAGC
AGCACCCCTCCTCGCGGATCTACCGCGTCTCGCGCGGCTCCGGCGGCAAGGACCGCCACA
GCAAGGTCTACACGGCCAAGGGCATCCGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCG
CCATCCAGTTCTACGACCTGCAGGATCGCCTTGGCTACGACCAGCCCAGCAAGGCCGTCG
AGTGGCTCATCAAGGCAGCCGCCGCCGCAATCGACAAGCTCCCAGAGCTCGAGGCCGCCG
CCTTCCCCAACCACCCGGCCTCAGCCAACAAACAGTCTTCAGCTCTTCAACCGGAGGCCC
ACGGCTCGCAGCCTCAGCAGCAGCAGCTCACCAGATCGGCCTGCAGCAGCACGTCCGAGA
CCAGCAAGGGCTCCGTCCTCTCGCTCTCTCGCTCCGACAGCCGAGTCAAGGCCAGGGAGC
GCGCGCGTGACCGGAGCGCCTCTGTGAAGGACAAGGAGGCCGGAGACGACTCGGCCACCC
GCGCCCCCTCGGCGCAGGCCGCTTCCTTCACCGAGCTGCTCACTGGATTGGCGGCCGCTA
CCCCAGCCGCTGCTCAGCACAAGCACCACAACTCGTGGCACCAGATGACCGCGTCTGCCA
CCGCGGACTACCTCGGCTTCGCCCAGCCCCGGAAATCCGGGCACGGGATGCTGCACACCT
TCGCCTCCCCGGCCCCGCACCTTGGCAACATTGCGCCCGTCGCCATGGCCCCGGGGCAGC
ACTTCAGCTTATCAGCTGGCGGCGAGCCGCAGACGGAGATGCCGCACTTCTCCTTCTCGC
AAGACCACTACATGCCCGTCCATGCGGCGGCAACGTCGGCTCCGTCAGTAGACTACAATC
TCAACTTCTCCATGTCCTCGGGTCTTGTGGGTGTCAACAACACCAGGGGGACCCTTCAGT
CCAATTCGCAGCCGCACCTCTCCGGCCACCACCAGCAGCAGCAGCTCCAGAGGCTGTCTA
CTCCACTGGATGCTCCGCACATACCCTTCTTGTTCAGCCCAGCCGTCGCGGTGGCCTCCC
CCACCACAGCGGAGAGCCACTTCGGCGCGGCGGCCGCATTGCAGCTCTGGGAGGGGTTCA
GGCACTCCGACATGAAGGAGAAGGGCAAGAACTGATCAATGGCTGTGCAATGCAGCGCTT
CTTTTGGATGGTAGGTGATGAACTCTCCAAATGCATACGTTTCCTTTGCTTTTTGGCTGC
TTGTGTTTTTAGGCCTTTGTTTAAGGCTGGGATGCTTGCCCATTGGCTAATTTGATATGA
TTATCTTCCCCTTTTGGTTGGTCTCGAGGTGGCCTTGTGCCCCTAAATCCCATAAAACAC
TCGGCCTGTTCTTGTGCAATTGACGAGTGTCAAAGCTTTAGGGGGAGGGAGCATTAGGCT
GAACTTTACTACAGGTGTCAATTCACTACTCACCGGAGAGGGATCTGTTTTGGTGTTCTG
TTCCCCCCCAACCATTATGTCACAGGAGACAGGCCAATCGCACGGTTTCTGGTTACCCGG
CATTGTATTTTTAATGCCTTAAATTGTAGTAAGCCCAGGCTACGTTGTTCTAGTATTGCA
TGAAGGGGGTCAGCTATATGATCAAATGCACTAACAGAAAATACAGGATGAATACAATAT
CTAAATAGGATTTGTCATGTAGTCTAAAAGTATTTCCTGAAGAGCTTTTAATCGTTTAGG
TGTAAATAGAGGCGCAGTCCAAAATTTCTTTCTAGATTTTTTTTGTTCTTATTCAGCAGA
CATTGAAACGTCTTCAGCACAGCTGAGTATTCAGCCGTGACGAAAGTGAATTCATGTGCA
TATCGTGACAGATATTTTCCTTAGAACTGGCTTTATACATCTTAAAAGTCAAACTGCCAT
ATTTCATTGAACTTCTTATTTATTAGGAGTGAGATGCTTTGAAACTTAACCTGAAGAGTA
CAACTATATTTCTTTCTATCGAGAACTTGAAATGTTTTTGTGCTCAGATACGGTTTGAGA
GCACTACAGCATTTAGAGCATCTACGACCACAGTGCCCTAATTTGACCCTCTATATGTCT
GTGGACATGTACGTCCGCAGACCCAATCACCCATCATTTGTCTGCGTCCGCAGTTGTCCC
CGTCATATCCGAACCCACAAATCCATGCAACCCCATGCAACGTGATCAAAATTGCACGCA
CATAAATTGAACATAGCATAGTTCATAGATCGAGGGCCACAAGGATTGCGAGCTCCTCGT
CCGATTCCGTCGCAGGGCGTCCCAAACTCCCACATCCACGGTGTCAGCAGCGAACGAGGA
GCCGCTGCCGGATCCAGCCAAATTCGGGTGAGGGAAGGGGGAAGACGGGGAAGTGGAGCG
GACGAGGAGACTGTGAGGAGAGTGGAAGCATCTAGTGGCTAGGGTTTGGTCCGGGTGGAG
TTTTAGTGGGGTCGGGGTGGGCCTGATCCTACATGGCTGCTGCGTCCGGACCTCCCCATA
TTCCGCCCCACATATGGGCTGGATAAGGGTGCCGGATGTTTGGGCTGTGTTTGAGGGTTC
CAGTTGAGTGGCTAAATTTGGTCCGGGCGGTGTCCTGGTTGTACGCCCGGGTGTTTAGGG
GGTGTGGGGGGAGTGGGGGGTCCGGTTGTAGATGCTCTTAGTACATAAGTAAGGTACTCC
CTGCGGTCCATATTAACTGACAGACACTTAATACAACTTTATTGGAGGGAGTAGTTTTTT
TGGAGTTGTTTTTGCATAAGAGTTTCATTCAGTGTTCATAGCCTTCTGTTGGTTGAGTAT
TGCAATATTAGGGACGGGCCATCATGGCAGACAGTCTATGTGTTGTTAAGCCATTGTACT
AGACTGCTAGTGGTGGATGGTTAAAGAGTTTCTGTGCATTGAAAAGAGTAACATATAGTA
TGATTCAGCCATAAAAAGGAGGGAAACTACATTATGAATCCCCTGATCTGTCGTAAATAA
GAGATGCTATCTCTGTTCACAAATATAAGATGTTCTAACCTTTTTCTGAATCGGATGTAT
ATAGACACGTTTTAGTGTGTTTGTTCACTCATTTCAGGCCGTATGTAGTCTATACTGAAA
TATCTAAAACATCTTATATTTGTGAACGGAGGTAGTTTTTTCTGGTCTTGTTGGTTGTTG
CTAGGTCTAATTTTTAGGTATTTGCTCAAAATTATTTCAGTGTGTGGAATATATAGACCA
ATCAATAAGACATTTATCGTATCGAAGGACAAACAAAACAGCATAATCTTCTCAAACTCT
AGTTTTTCAAGACACTACTAACTATAAAAAGTAAATTATTGGTATGAACATGCGGTCAAA
ACTTGATACTCTTGGAACGGTTCACTGTGAACCTCCAAGTGCTAATCCTGGAGTACTGAG
AAGTACACTAATTATGACAAAACCACATTCTGACATAATAGAATATCATTCACACCATTC
ATATTTATGTCACATGATTCATGGAGTCTTACCTTATTTTTGCAGTGCCTTGTTTACATA
ATATTATGGAATCAGTCCTCCTATCTGTTAAATAAGCCATCATAACTCTTCAGCCTATTG
CTTTGTGAAATGTGTCATACTTGTGCTAAAACACTTAGGTATTGTAAATAAATCCAGAGA
TATGAGCGATTAGGTCCTAAGCGCTTTTAAAAACCTCTTAAGTGAGCTGGCATAACTTAG
TTGTTTACTCCATTCATTCGCCATCAATAGCCTTTTGCATTTTACCTCAGATATGTACAT
AAATAAAATAGTGAATAGTAGCAAACATATCCGTAGTAATCTTTTGCATGGCTAGTGCGG
TAGTGCCTGTTAGCCTTTTGCATTTTACTTTAGATACATACATAAATAACATACTGAACA
GTAACCAACATGTTCATAGTAATCTTTTGCATGGCTAGCGTGGTAGTGCATGTTCTCATT
TGAGTAAAGTGATTTTTCTCCACACACTTGTATCTCCTCCCTATACCCTCTTTCCTTTTT
ACCCGCTATAAAAAGTTGTGATCAATATTGACACCGATGTTTACAATGCTATAAGATGTG
CACTTACAAAGTTTGGTGCTATGAATATGGCCATATGCGTTCTGTAGAACACAATCAAAT
TAGTGTGAATAATATGTCATTCAAACATGCACAATTTGTTATTATGTGTAGGACACGAAT
CATAACAATTTAATACCTTTTTTTGTACATCTTATAGCATTTCAAAGAACCATAATTTTT
TAATTCTTAAACTTTTGGTAGTGGGAAAGGAGAGAATATAGGGAGGAGATATACAAGTTG
GTGGAGATAAGCATTTCCGTTGGCTGGGTGGCATGGTTTTACTTGTACATATCATTTGAA
ACGTACAGTTGCATCTAGATTTGTGTAGCTATGTTTTGACAAATGACATACTTACACCAG
TGGGAGACTGATTTTACTGAAAATTGTTCTGAATGATCCATTTAATTTCATAGTTGCAGC
TTGGCATTGTTAGAATCTGCTGTCAGATTCATAATGCGATATAGTAGAGGATATCATTGT
AAACTGTCAAGATTATTTCGTTGTTATAGAAGCTTCTCGGAACTTGCTTTTTCCTCCAGT
TCTGCACCAACTACCATGTTTCACATATGCGTGCTGTACTGCTGTGATATACATGGAAAT
GTGATAAATGCCACTGCAAACTAATCATGCTATCACAAAAGGTCGAGTTAATCATTTTAC
AGCAGAGCCCTGATATTTAATGCTTGCCTTTAATGATGATGTATAAAATTCTAATGGAAG
CTAGACCTTTTCTTATTGAATTTGGTTTCCCCTTATTTCTAGAAAAGCTATCCTCCAGCT
AGAAACATTCTGAGCATTTAAAATGATCCTACCTAAGGACTTGTTTATCTTGCCTTGAAA
TTAGGCTTATCAAGAAAGTAGGGGTAATCAGCTTAAAGGTGGCTCATTTTCTTAGCTTAG
TTAACTACAACTTACTACCTCCGTCCTGGTTTAGTGGTCCTCTTTGTATTTTGTGCCAAA
CTTTGACCTTAGATTTAACTAACACGTTAATGCACATCACGAAAAATAATCTCATTGGGA
ACTATGTTCAAACAAGAATCAAACGATATAATTTTTATGACATGCACTAACATTTTGTTA
GTTAGATCTATGGTCAAAATTTAGCACAAAATACGAACGGGACAAATAAACCAGGACGGA
GGTAGTAGGTCCCATTTCTACATAAGATATGCATAGTGGGTGGTTGTTACTTGTGATGTT
TTAGTTTTGAACTCATAAGATCAGCCTTATTAGGGCGATCAAGCTCTTACGCCATTTGAC
CAAAGCATGAATGACTTTGCGGTTGTCTTCATATATCTATGCTTCCTAGGGCTCTTAGAC
CATCTCTAGCAAACCCCGTAAAAACGCAAACTGTAAAACTGGGATACGGGTCGAAAAAAA
GGCATTTTAAGGGGTCCATTGTAGCTTACGCCCGAACAGAAACTGTAAAAGAAACTATAA
AAGTGCGATAAAGATCTCCTTCCTCCGATCCGGCAGCCGCCGCCTCTTTCTCGAGCCCGC
CGCGCCGGCCGCGTCCAACCCCGTCGGCCGTGCCCCATCGCCTCTTGGCCGCACCCCATC
ACCATGCCGGTCGCGCCCAACCTTGCCGGCGATGCCTTTTCGCCCGCCGGCCATGCCCCA
TCGCCTCCGTGCCAGCCGCGCCGGTCAAGCCATGCCCCTTTGCCTGCCGCGCTGGGAGGA
TTCCAGCGGCCAGGCTGAGGTCATGGGAG