Map Locations of contig_1558624 (9931 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1558624

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10206 10 3876 bp MLOC_10206.6 Available Available LOC_Os04g34610.1, FRAME:-1, EVALUE:0.0, 13104.m03363 protein expressed protein





CDS Structure of MLOC_10206






Contig Sequence (9931 bp)

>contig_1558624 9931 assembly3_WGSMorex_rbca.fasta
CGGATCAAAATGAGTGAATCTATACTCTATAATATGTCTATGTACATCCGTATGTAGTTC
ATAATGAAATATCTAAAAGGTCTTATATTTAGGAACGGAGGGAGTAGAAAACTGTTGACA
CATAAGATCTTTCTTTGGGAGAGAGGGATACGATAGAGAAGAGAAATTCCTGAGTTATCA
GCAACACCCGCTTTAAGCAGAATGGTGACTGATAGGAATCGACAAACCGGCTCATTAATG
GAGGACAGTTTAACTTCCCACTGGTTAGATCAGTGGAAGCAATTCTGCAAGCAACGGAAG
ATGCCAAAGCATATTCCGGCAATTATTCTGATGGGCATCCATTGAACCTGCTACAGCAGA
GCCATCTGTTTCTCAGTAACCAAATTTGCTGTGTTTGTGGTTGCGGTCAAATCCAAATTT
CTGATCATTTATGCCGTTCAATTTATCATTAAAACATACGTCTAAATTAAAACTGTTACT
TGAAACAACGAAGCTACCTTATTGGTACTGAAACATATAGAAGCTTGAAGTTCTAGAGAT
AAACTACACGTTACTGTCACCTGCTACGAAGAAATTAGTTGGCATGATAATGAGCAGGCA
TAAAGAGAAAGCAGCAGTAGCAGTTGCAGTAAACTGTGCTGGCTGGTATCAGAATGATCA
GCCATTCATGTGCTTACACATTTCTCCAGTGTGCTTGGGAAAACGGACATCCCTGCAGGA
AGCATTAAATTAGGCTTAAAGAGTAACCAACTAAGAATACAGAAGTAGGAACAAAATCAC
TTGTCATACTGAGATTGACCAAATGAGAAAAAGAAACATATTTGGTTTACTGGACAAACA
ATCCACAAAATCAGCCCATCTGTGAGGATACAGGTGGCACAAAGCAATTTTGCTCAGTGA
GCTCATTTCATCCAACTGTGCAGAGTGAAATATCTCTGTTCAAACATAGCAATAGACTGT
CACCATGTCATTCATGTCTAAAACAAATTTTATTTTCATCTGAGGAATGTTTACAAGGAG
CATCTTCCATTTAACAGTTTTGCTCCCAAAAAAGACTGAAATAATTATATTCTTGATCAA
AGAGGCAAACATGTCGTCTTCAGTTCACTGAACCAAGACATACTTGAATTTGTGACCAAA
AAAAAGGTAAATTATTTCTCACTAGAATATTGTAGAAAATATCTTCAATCATTGCTAGAT
GACACGACTCTGCAGTGCGCTGCCAACAACATGCAACTTGAGAAATCTACAAAATGGGAG
TATCCCCTCCATGCCCCTCCCCCAGCCACCAGCCACCAATAACTGACCCCAACTAAAGAG
TACATAAATATAATAGTTTTATTTGCACCTTTACTTGAGGTGAAGATCTTCATGGCCCAG
TTTGATGATGATTCTTCCATGGCCGATAAACAATTTTTTCTGCATCTAATCAGAAAGCAT
GTGAATACTTTTGCATAATGGGGGAGGTTACCAATAGAATGGTCCAGGGATCAACCATAG
AATGTTAATGTGACAGAGAGTGCTAGAACAGACTTCAAGACAACACTGCTACATGGTTAT
ACAGAAACATGAATCTTAAGTGAAACCAATGCCACAGAAGCATGTCAGAGACTTCTCCAA
AATATCTCATTGTCATTAACTTTGTTCATCAGAATAAACATTATTGGCAAACTGTGCTTA
AATACAAAGAAAATATTCATTTAATCCTGCAACCATCTTGAAAGTAAGCTCCACAACCAC
CGATAATGACGATGGAACACGTCAAACGTCAACTTCGTTGTGCTAGATAGATACCTTCAA
GCAGATCTTTAGCATGATTTGCCAGATAATGTTGTGGACCATAGCATATATTTGCAAGAT
ATTTGCAAAAGGTGATGCAGCAAATAGCTAAGTTGAGAATACACCCCTTCTGCTCTTCAG
TGAAAATTGCTACACCATCTGTACAAGAAAGGTTGGCAGAATCTACCTCAGAAAGATGAA
GAGACTGAAATATTGCTGTCCCAAGCCAACGGAAGTCTATAGGGTTCTTTATCTTTTCCA
GGCAGGGTGAGTTTTGCGCAAGAAATGGCCAGCACTGCAATGATAACGATAACATGTGCT
TGCCAAACTCCTCACAAGTTGATCTGAATTGATGGTACTGCATGGAATCACGTGTTCCTG
AACTTGCTGAACATGAAGTGAAGCTAAACTTAGCTCGGGATACATTTTTCCTTCTCTCTC
CCTTTACACATTCAACAAAATCTAAAATGGACCGTCCAGTGCTTAACAAAAAATGTGCCA
GTGGGGTCATAAAGGAACGTTCAGATAAGAACAAGTGGTGCGTAGCTCCTGCAAGAAGAA
ATGAATAAGCTACTGCAGCTTTTGCCATTTTGAAAGAAACAGCACCGTTTTCTCCCTTAA
AGCCATCAGTATTGGATTCTAGGGCACGAAAGCGGTAAGCAGACGAAAGTGTCATATAAG
CTCTAAGACATATATGATGAAGAGGATGTAGTATATGTCTGCTCCGTGAAAGTTCCACTT
GCTGCAAATCACCCATCAAGTTTTCGGAAAGCAAACTTTCAATCATAACACAGCAGGCTT
TGGGGTCATCACCCAATGAATATTCAGAGATTGCCTGTTGTAAGATATCATCAAAATCCT
CGCTTGCTCGAGATATAACAGCATTCTCTGGTGAATTCAAGTTCCTGAAGTCACACTGAG
AAGGGTACCATGTCAGCTCGCAGAAGATACAAATTTAAGCGTAAACTTTCAGGAACCTGC
AACATACACAACTACCTAAAAAGGGTTGCTAGTTAATGTATATGCCGCTGATACTAGTTA
CTGGTTAATATATAGTTTTTTGTAAGCTGTGCTGGGATGAGAGATATCTGATAGAAGTTC
AAAGATGTAAGTTGAGCCACACTGATAGAGAGAACACACCAAAGTTTACAAACATACAAG
CCACTGGAATTTAAAAGTGTCTCAAAATATGAGTGGCTAGAAAGAACTTATAGCAGAGTA
AAAAATCAAATTTATTTGACTAAAAGGAATATGGCACAATACTATAATAAGTGCATCAAG
ATAGTACATGGTAAATTTAAACAAATGATGACAATATTTTCTCCGGGATTTGGCTCTTAC
ATTTAGAATAAAATCCACATATGATTCTGGTGATGCAGTACAGCGCTCACAAGAACAAAT
AAACTTATACTTTGACCAAAGATCTGAATGCCTTGCTTCCTGTAAAGAGAAAAAGTTCCG
ACTTATGAGTGTGACAAAGTAGGGAAATAGAAGTAACTCATAATTTATTTGATGTGCAAA
CAGTTAGAAAACCAAAAAAGAAACAACACACTTGAACTCCCCCAGTTCTTGAACACCTGT
TATTCTAGTTCGAAAATTTGTTCCTAAATAGATGTCATTTTACCATTTCATGATAACTTT
ACACCAGATTTTCCCTTTCATACCCTTCCCTTTGGCTATTTCGAATACATTTATGAGTAA
CAGACAACTTCGAAAGGTAATAACTGGCCTAATAAAAGAGGGGTCATGTTTCAGTCTTTT
GACTCTTTTCCACATGCATCTTGCTTTAAGTGTGAACTCCTAGGTCGTCATGTATTCAAG
AATGGAGGGATTGTGATATCCTAAAGCATATTGACCTACTTATATGGAAGGCACGGAAAA
CATTGTCTACCACAACAACTTCACCAAGGCAAACAGTGTGCAGAAAAAAAGATCCAAGAT
AACATAGCTACACCAATACATCTAAATGGAAACATATAACATACATAAATTTACTTATAA
TATGCAAATCCATCCTGAAAAAGGTGCGCATTCATATGAAAGACATATCTGGTGCTCCCA
AGGCTTGTGGGGCTACTGGCTAGCATGATCCAAAGCCATGGGAGCACAACCGAACTGTCT
TAAAAACTTCTGAAAATTTGGGTGCATTGACACAATGTGTATTTAGTATGTCATGAAATT
TCAATATATGAATTCCACACCGTCACTAAGAAAAGAAGAAGAGAAATGCTATTCATGGCA
GAATTTGCCTGTTTTTCTTCTTTCCTGATGTGCAGATTGGATTTTAACATGAAATTGTGT
GGCATGACAAGTTTATATTGTGTTAATCCACTTGATTAGTTTTAGAGTTTTGTGAGCTTT
TTGGTTGTGCTCCTGTGGCTTGGGAGCACTGGATATGTTCTTCATTCAGATATAGCTTTT
GCAGATGGTAAGACTAAATAGTAATCAGAACATCTGCCGACAGCAGCAGCTCAACAGAAA
GTTAGAAACTATAAAAACTGCATTACAATATCTAAGTACTTCTGTTTTGGATGAACATGG
ACAAAGGGCGGCCCTGTTTTTCTACAAGAAACAGTGTTTCCCCAAGTGCATAAAGAGTTA
TATTAAGCATGGTTATCTAAAATTAAGGGAGATTTTGATGTAAACACTAATACCAAGGGG
ACCACTATAGCCCATTATTACAGTTCAGGCAACAATTGAGCCTTCGTTTGATTCTGTACA
ACTAATAATACATTAAGATAACTGACCTCCTTGTATTTGGAAACTCGTGCAAACTAGGAT
TTAGCAAGAAAACAGTACCCTGGTCTGGAGAAGATCAATGTATGTTATGCAAACTTCATC
CGCCTTGTTGATTGGCTTTATACAACGGACAACAACTCTTGGACCACATTTGCCAAGTGC
TAAAGAGAGTCAGGGTAAAGGTTCAGAATGTTGCCTCACGTTGCAGAATAAATGAACATG
AAAGAAATACCATGAGTAGAATCTTCTTCAAATTGCCAAGCATGCCACTGCAACCAACAA
AAAGACAAATAACTTACTCCAAATTCAGAAATATTTGATATTCAAAGTAGTTGATTGACT
GTAAGAATAGTGGATGCACAAGTACAGAATACACCAAATAAAGCAGTAGTTTGATTTCCT
TTACCGCATCTGCAGCAACCCCTTTGCTAGCAGGGACTGCACGGTATTCTGGTTTTTCTG
AAACAGAATCTTCATTGGGTGGAGCCAAAGCAAAACGATAAGAAGCGTTTGGAAAGCAAC
TATGATTGAACCATGAGAAACTAGGCCCATAAACTGCAATCCCCAGATCCCACCCGTCAC
TAATCTGCACCTCAACGCTGTTGATCATCACTGCCCATAATGCCACTATCTCTACTGTCA
AGCCATTGGAGAAAACAACAGAAGTTTGTGTCCTCATTTTTCTGGCAGACGACATCAGCA
TGCTTCCCTTCCGTATCGTCTCGGCAACCTCCCCACCTTCCTTCAGAACTTCCAGAATAC
CAATTGTTGAAAGCCCACCAATTCTGCTGGAGCGGTTGATTGAATCGGACGAAACAAGAG
CATGCATCTCGAGAAAATAAAGAAGCCGAAGAGAAGCACGGACATCGCTTGTGCCTTCAG
TGACATAGGATGGAGATGCTTTCTTGAGGTGGTCGGCGAAGAAGTAACATTCACCGGAAG
ACGAATGCACTTCACGATCCGAGCGTAAGCAGTCTGAGCAGCAGTACTGAACAGAGCAGC
AGGGCATACAAGACATGGCACATGGAGGTTGCGATGGCAACTTCCTGAAACACGAGGAGC
AATGGGAGTGGAGGAAGGCGTCGTGCAGGGCGGTGGCGTAAGGTGCGATCGCCCGTGTTA
GGTCCTCCGACATGCCTACAGATTCCCGGGCCCTCATCTCCATCGCCATGGGCCCTACTC
CTGTCCTCCTGTTGCAAGGTTCGGTTTCGCACAAAAAGGAAAACACGAATTAGACTAGAT
TATGCAATGCTCAGAAGAACTGAATTAAGCTTTCGCCGCAAGCCCGCAACATGATCTATC
AGCTCGGCCATTTATGATACAATCTTGTATGCTCTTTGGCTCTGGTTCTTCTTAGAAACT
ACACCAAAACATCCACATAGATAAACCTATATGGAGCATCTGCGTGACCAGTTAATTTTG
GGGGCAAAGCAACATAGAAGGGCAGGAACATTTTGTGACCGCTGAAATCAGGACCTGGAA
AATCTAGTAGCTGCAGAGGATGCATAGCTACTTTACGCCCAGTTGCGAAGCAATGCGTAG
GGGGCACCGCACCAAACCCTCGCTAAAAGAGGAAGAAGAAGAAAAACAGCTGGGAAGGTG
AGGCTTACTCAGATTGGAGCGGAGATAGCCGCCAAACAACGAAGTCGCAAGCCTGCGGGT
GGGAGGTAGGAAAGCGTGGTGACGAGCGCGGACGGGCCGAGAGGGGGCGGCACGGCGGCG
TGTTGCCCCGGCGACGGAGAAGACGAGAGTGCGTTGTTTGTTGGTACTGTTGTTGGGCTG
ATAGCTTATTTGTGGGGCTTTGAGCCCTTCTACAACTCTGGGCCTGAGGATAGATGATGT
ACTGTGCGCGATCTAGGGCCCGTAATACACGCGATCTTTCTCTTTGTTTGGTTTTTCACG
GAATTCCCTATATGCCGCTCACTGCGGTAAGTAGTCGCAGCTTCGCGAAGGAGGTGCGAG
CGAGTGACGAGGTTTGGACCGGTCGGTTAACACTTTCATCGATCTAGGTTTTGGGACAGG
TTTTCAGTCCGTTTTCTTCGATTTTGGGATTTTTTAGCGGATTCTCTGAACCGGTTTTTT
TTCGTTTTCTTTATTCTTTTTTGTTTATTTTTTTTGTTTCTGTTTTAAAAATGTTCTTGA
TTTTCGAAAAAAATCGTCATTTGGAAAAATGTTTCAGAATTTGTAAAAATGTTCCGGAAT
TTCAAAAAATGTGCTGGAATTTGACAAAGTTCCGGAATTTGAAAAAATGTTTCAGAATTT
GAAAAATGTTATGAAACTTGAAAAATGTTTCGGAATTTAATAAAATGTTTCAGAATTTGA
AAAAAAAAATTGGAATTTAAAAAATTATTCCAAAATTTGAAAAAATGTTTCAGAATTTGA
AAAATGTTCAGAATTTCAAAAAATGTTTCCACTTTCAATTTTTTTGCACAAAGAAATGTT
CCGGAATTTGCTTCCAATGTTTCCACTTTCAAAAAAACGCAAATTCAAAACTTGTGTTTT
GGAAAAGAAAATATTCATCTCAAAAAATGTTCCTGTTTTTCAGACAATGTTTGGGACATT
TGGAAAACTGTTTGTATTTGAAAAATGTAATCAGTTTTACAATTTGTTCAATTGTTCCGC
CGTTGTCTTCCGTTTCTTCTAATATTGCACGGCAAATAGAGCACAAGAGCTTGGTTGTCG
CAGTGGCTAGCCCATCACGTGCATGACTTTGATCTCTGGGTTCGAATCCTAGGAAAGGTG
TTGGTTCTTGCGTGTTATACTGTTTTTTGACCTCGCGATCATGAATTGGGCCGGTCCAGG
CGAGCCGCAAAGAGCGTCACATTTAGATCTTGAGAGGGCTTCCACAAGGGTTATTTTTGT
GTTTTGGAAGCGTGTCAAATGATGCGTCCATCAGCCACTACCTTGTGTAGTGCTCCCTTT
TTCAGGATTTTACTTTTACTAGTATGTATGCACGTGCAATGCACGTCTTAACAATATTAT
ATTCATGATTTTTGTAAAATAAAAAAATGGGTATACAACACTTTATGATGAAATGTATGC
ATGCATAAATTATGTAGTAGAAACTTGGTATATGATGCAACTCCCCTAGCCTGGTGACAC
CCAGAATTTTCCGGAAAACAAAGGCAGATGTATGTGATGGACCCCATAAATTGTTTACTT
ATGTTTTTTCCTTCCTCCTCCTAGACCAGACCATGCATCTGTGGACTCTGGTATTTAGGT
CTCAGCCTGACAATGCAAAATGACAGAGCAGGCAGGAGTTGTGAAGCGATGGTTTCAGAA
CCCAGCAGAAGTAGCTGTGTGCTACTGTTCACCGTGAATCCTTCAACCCTCAACCATTAG
ATAATGGAGACCAATGGCTAGGATTGATGCTTTAGTTACAATTCAAAACTCGTACACTAT
GTAGTGGTATAGATATTTCTGCATTCGTTTGGTTTTTAGATGTTTTTTCCGGGTTTTCAA
TCTTTGTCCAGCTTTCCTTACACTGGAGAAAAACATATTCTTTCTAAGCACAATCGTACT
TCTAAGAAAACAAATATGTGCTTCAACACGAGAAGCACTACGTCTCAAAAAGAGAACATC
CAACACAGCTTCTATGAGCCGCAAAAAGCACAACATTGTAAGCATAACCTATGCTTCCTT
AAAGAAAAGAGAAAAGTACATTATGTGCTTTCAGAGAAAGTGAAAACCGCAACCGTGCTT
TCAGGTTCTTTTCTTTCTTCGCCTTTCCGGTGTTCGCTTGTCTTTTTTGGTCTTTTGGTA
TTTGTTTCTTTTGTTTCTGTATTTTCTAGTTTTTAGCTTTTTGGTGAATAAAAAAGACAA
CTCAAATCTATTAACATGAGATATATTTTCAAAGATCCCGGCACAAGAAATCCAACAATA
AGAAAAGTTTCATATTTGGATGCATGATTTAAAAAATAAAATATTTTGAATACACGAATC
TATGAAAAAAAACTTTCAGATTACGACAAGTGGTGGATCTGTAGTGTGTCACTTGACAGC
CTTTGAAAAGGTCGGACATGAACGTTGTAAAAGGTAACCTTTAACTAGTGATTTTGCTAT
ATCTCGTCCGCGACGAGAGGAGCATCTGATCGGTGCGCCCTCGACATAGTAAGCTAGCCC
ATCAAAGGTCCTTTCGATCGGTTGTAGAACCTTTCATTTGTTCTTCTTCTTCTATTTCTA
TGTGTTATCTTACTCGGTTTGCTAGTTTTTGGTTTTTTCCTTTATTTATTTGTAAATACA
TGTCTATTTTTTAATATATATTGTACTTTTTTTAGTGCACTCTTAGTATATTCTTAATAC
ACGTTGAACATTTTGCAAATACATGATGTATATTTTTTGAATTCTTCTTTGAACTTTTTC
TAATAAATTTTAAACATTTTCAAATACACGTTGAATAGTTTATTGAATGGTACGAAACAT
GTTTTATATTATGCAAAAATATTTATCTATTATTTTTAAATGATACAAACATATATTTGA
AACGTGTGACCATTTTTCAGTATCACGTACATTTTATTGAGTGCTAGTAGACATATTTAA
ACTTATGCTAACATTGTTTGTATAACTATTTTTTCAAATATCATAATTTGTTTGAAACAC
GTGCACATTCTTTAAACACGGTGCAACCATAGATGCTTACATACACGCACATACACTCAT
CGTTATGAATATATATATGCATACATTACCCGTGCGAGCACCTCTGAGATACCGGATCGA
CACAACATTTTAAGATTGAACATGTGTTCTCTTATCGGGTTTTTAGTTTTCATTTTCTTA
TTCTTTTTCTTTTTGTATAAATATATGCTTACTTTTTCATTACACGTTCATTTTTTTGCA
TACACGCAAAAAATAATATTACATGTTAAACATTTTTTAAATACATGATGAACATTTTCA
AATTCATGTTGAACATCTTTTTGAATAAATGTTAAAAGAATATAATACAGGGTGAATATT
TTTATTGAATGGAATTAAACATATTTATATTACACAGACATATTATTTTTCTTTATTTTA
AAATGACATGAACATTTTTTTAAATGTGTGAACAGTTTTTCAAATCTCACGTACATTTTT
TTGAATGGCGTGAATAACTTTTTTAAAATAATGTGAACATTGTTTGTATAGCATTTATCA
AAAGTTCACATTTTTAAAATACATGCACATTTTTTTAAACATAGTATAATCATATATGCT
CACATAAATGCACATACATTCATCCATATGAACACATACATGCATTGTTGGAAATATGTC
CTAGAGGNNNNNNNNNNNNNNNNNNTATTATATTTCCTGTTTTAAGATAACTATTTATTA
TCCATGCTATAATTGTATTGAATGAAAGCATTGATACATGTGTGGATACATAGACAAAAC
AATGTCTCTAGTAAGCCTCTAGTTGGCTAGC