Contig Data
morexGenes
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Map Locations of contig_1558612 (5997 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1558612

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10203 4 1328 bp MLOC_10203.4 Available Available LOC_Os05g48590.1, FRAME:-2, EVALUE:3e-91, 13105.m05176 protein OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed
MLOC_10202 1 1415 bp None Available Available None





CDS Structure of MLOC_10203






CDS Structure of MLOC_10202






Contig Sequence (5997 bp)

>contig_1558612 5997 assembly3_WGSMorex_rbca.fasta
TAAAGAAACAACATGATTAACTTCTACAATACTATTGATGTGACTATTTCATCATAAAAT
GAGGAATGTAATCTTTATTTGGAAATATTTCAATTTACTAAAAATAGAGGGTCGACCTTC
ATCGATGTAAAGTTGGATGATTTCAAACAATGGCCTGAAAGTGCAGCCTTTTATCTAGTC
AATTGTAGAATAAGTACCTTGACATTTTAAAGGGAACCAAAGTACTACTTGCCATCATGT
ATAAAAGTTAATCCATAATTTGATTTGGAAAAAATGTGTGTTGTTTGATTATCTTCATCA
TGGTACGTTCAAACTATATGAACCTAAAGTCAATTCTGCAAGAAACTTACAAACATAGAA
CACAAGGAGGGGTACAAGATAATGAAAATTGATCTAGCCAAATTTGGAAATACACATACC
TGTGTTTATCAAACCCTCCCAGGAGTATCTTCTTTCAAACCAAATAATTTTCATACCGCA
AGAGATCACAATATCAACCTCTACCACGAGTGTATCAATACCGTTCGTTCTTTTCGAACC
TGTTAATCATCAGACCCCAAGAGACCACAATATCAACCAGAAACTCAGTCAATTGTCAGC
AAAGCTATGAGTAAACATGCTAGTTGCACCAGCTTGATTGAAAAGTAGGCGAGGCGAGAA
ATTTACATATAAAACTAACATATCAGTATACAGTAAGGCATCATAATTCATCCCGATCTG
CAGTGGGACAAAAGGCGCGTATTTAGACAATGGGTGCACCTACACCTATGAGTCAAAGTA
AATTCTCCCTAGTTAATCTTAATATAAACATCGGTAAACAAAATCAAAGGACCAAGAAAT
CCATCAACATTCTAGCGGCAAATTAACCTTTTCTCTTATCCATGTGTTTCCTCCTTTCAT
GCACATTTTTTCTGCCTTTCCATGTGACAAAAGAAGATGGAAATCTTTGTGGGTGCCTAA
GCTGGTTATTTGAGTAGTTTGGCGTTAATTTGGAGTTAGTTGGACATTAGTTGTTCTTTC
TTCATGTGTGCTTTTAATAAACAATACAATACAAATTTGCTTGCAGTGCTATATAGTCCT
CCGTTCCTAAATATAAGTCATTTTAAAGTTTCCAGTAAGAAACTACATACGGATGTATCT
AGACATATATTAAAGTGTAGTTTGAATCATTTTGCTTCGTATGTAGTCTTCTAATGAAAT
ATCTAAAAAGACTTATATTTAAGAACGAAGGAAGTATATATATACTTACGGAGGGAATCC
AATATCTGGCTGTCGCTGCAACCGCTGCAGTACCATGGAAACACGACAAATTCTTCGCAA
ATTCTTCCCGTTGCCTCCCTGTCCCTGGTCGATGCACATATCATCAAGATATGGATAATT
GGTGTTAGGTTAGGGTAGGTTAGGTTAGAGAGGAACGGGGGCCGGGGCGGCGTATGGTAG
GGAACGAGGTGGAACAGTCGCGCAGAGAAGATTTGATATGTGGGGGCATGTTAGGCCAAA
AGAAGATCCAATCTTCTCTGTGGGGGCATGTTAGGTCAAAAGAAGATCCGACGGCTGTAG
TTTATCGTTTGATTGAGGGATCCACCAAATCAATAGCCAAATGCATGCTTCAGGCTGTTG
TACCATTTTCTGGCCTATGGCTCTTATTTCCCTGGTATGGTAAATGATTTTTCTAGGATT
TTTTAGTCTCTTTTTTTTCCTGGTGAACCCGACAAGTACACATACGTACAAATATGGGAT
TTTTGGAAGATACATCGACCAGTATAGCGACGGATATATTAGCTTTGCTTCCATGCACAA
CATAAAATGGATTCATCCGCGACAGTTTTCATAAAATACGACTTCAAATATATATGTAAG
AGCATAGGCTAGCATCATAATACAGGCGGTGATCTTTCATGAACCAAAAGGTACCATCTA
CAACGGCGAGGCCACAGCGTCTGCAAAAACGGACGGTTTTACAGTAGGACGCACATATTC
CACTACACACGTAGATAGAAAAAACTAGCAGCTCAGACACTTTCAGAGTTCAGACAACCA
TCGTCCCCCTTGCAGGGCTAACTCAAAATTCCACACTTGCGTGATTCAGACAGAGACTTG
AGGGCGCTTGTTTGTTCTGGCGTGGCCATTCCGGCTATCTTGGGGCTGCAAGTAGATGGT
ATAGACACTTCAGACTGCAAGTAGATGGTATAGACACTTCAGACTGCAAGTAGATGGTAT
CGACACTTCAGATCAGATCGATAAACGCAACGGAACATAGAGACTTGGCGACTAAAAGAG
AGTAGCTGTCAAATGAAAGAAGACGACACTCAGAAATTGTATGATATGGAGAAGCCTCCA
GGCACTTTTATTTTAGTTCACAAGAAAATGGCTAACACAAGGGATTTGATTTTACTAATT
GTCCACAAGGGATTTGATAAATGGAACCATGAACCCGCTGCAGCATATCCAGATTTTTTA
TTTAACTCTGTTTCATGTTTCTGGCGATATGTGGTTGGTCTAATTCTAGCTCATCACAAG
TAATCTAAAATGAACATTGCACACATATACAGGACTTCATACTAGCCAAGAATTGTACTC
AAAATTACCTGATACGACCTAGTATTATTAAAAGCTAGTGTTTTAATGCGGTATATATTT
TTTAAAGAATAACATCATGGTCAGATTTGTAGTCACCTCAAAAGGATATTTCAGGGCTTT
CACGTGAAATCACAAGTCCATGATAAGGACCGGTTTAGTAATCGGGAATACCAGCACACC
ATGAAACTAAAGATATACTAAAATCATGAGAAAGAATGGAGCCACATATTTCACATGGAC
ATAATTATTTGTCTAACAAAATCTTCAAAGCAAAAATGGAGAAATATTAGAGACATGATA
GTATGTGTATTAACATACCCATTCCAGCAGCATCAGAGCCTCTCATGATTCTCAGTTTCC
GACAAGTAGTGGTAAACAAGCTGCAAATGATTGAATGATGGTAAGCATACATGAATACCT
AAAGAATGCATGGCAACCCATTCCAACAATATACATGTCATGTGCTGAGTATAGGAAAAA
TAATAATAGCATACACATTACAGAAAGATACACAGATAAAGGTGAGGAGGTGGGGGTAAA
GTATATACATTTTGTATTATCTCGTAATAGATGATAATTTCACAAAATCAATACGTACTG
CTAATGTCAGTATATTGCTAGGAAGATACGTCGTCTTCTAGGATGCATATAATTCTCAAT
TCGTATAATTCACAGTATAGCTAACCTATCCACGCGTTAGCCAAACGGAACTCTGATTCA
CAGAAGGGCAGTATCTATCCATGACACAGAGGCCGGAGGCATATCTTCCATTTTCTAGAA
GAAAAGAAGGGCAATCAAAGCTTCCAAGGAAAACTAGGAAAAGTCGATTACCCAAACAGC
CATTTTTACACATGGGAGCATCTCAAAATGTCATCAAGTTGCAGAGTTTGTGTTGCAATT
TTTTGGCTAACGTGCAAAGGGTAACCCACTTGTGGTAAAAGTCTAGGCCACCCTATTGCA
AGTTCTATCAAGTCCATCACTCTACTATCAACATTTCCAAAGTTACATCAACAGACAACA
GCAAAAGTAATACTGCTGTCCAAGTGGGCAAAAATACTATATGTAAGAGAAGAATACCAC
AATAAGACATCATGGAAAGCATACTAAGTTAAGGTGCGTGTAAGAGACAAATACCACAAT
AAGACATCATCAAGGACATACTAATAAGTTAAGGTGCATGGATCTCACAAACTACAAAAT
TCAGGAACTTACTCCCAAGGAAGATCACCCACAAGCATCCAGTCAGCGTCTTTGTCTTCA
TAGGTAAGCACATACTCTTGGTCCTGAAGAGCATCAGCCCTAGAACCATCAGTAAGCCTG
TCTCTCGTTGATGTTTTGCAGGAACTGCTTTTGCCTGTAATCCAACAATTCTAAATATAA
ATAAGCTTCCTTGAAACATGCATCTATTTTACAGAAATAGAAAACACCTGTAGTCACACA
AAGTTCCAGAAGTAAGGCCAGAAATGATATTTATAGCGGCAGAATGCTTTTCAATCGAGA
AAACGGAAAATACTGTATAAAAATTTCACATCTACAGAGTTAACTGTAAACCATTTAGGA
AAAAGAATACAGAGTTAACTGAACGCAGGTTACCAAAAGTTGCTTCTTCTGCTCCTATAC
GTAAGGAATGTTGTTAATTTCTCATACTACAGTACTGTTTTGCTTTTGTGTTAGTTGCTG
TCATTTAGGACAGACCAGTCTATAGCACTCAATTTGCAATCTACATATCTACTTATTTTA
CTCTATTCTGAAAAATATGTTATAGTTAACCCTAGTTAGTAACCAGTTGCTGTTCATTAA
CTAGTATTGGAAACAAATAGTTCAGCTAGTGGGATTCACGAGTAGTCATGCACCTTTTAT
CTTCTCAAGAGCTTCAGTAACCAGAAAATCCATCTGGAAATCTCATTTACTGAGGCTAGA
TATTAACCTACTAACTTAACAATAGTAACTTGCATCTAGAAACAACAAAGGAGATGGATT
AAACGAAAAGAGCAACACCCACCAGTGATGAAGCAGCTGAACATCTTCTCCAGCTCCAGG
GAAAGGTTGTCATAGCTGGAGTAAGTCTTAAGATCGACCTTCCTTAGGTATGGGGCTCCA
TCCATGCTGACCTTGACATAGCAGCATCCCGCCTCGCTTCTACCTTGGCTCTCCGCCTTG
GTCTTTGTGGCGTTGGCGGCTAACGTGTTCTTCCGGTAGCTCCGAACAGGTGGCCATCCG
ACAACTTGAGCCCTATAGATTGCACAAGACTTGGCATTAGAGCAGATCAAACCAAACATC
AACTGAAACACATGGTTTTAAACATGCAATCAATATTGAGATTATTAGCCACTCCCCCCT
TCCCCTTATCAAATACAACTCGGTTAATTTAAGATAGCAACACCCGGTGGTTACAGGCTT
ACAGAGCCCGATTAAGTGAGCAAGTGGCAGTTCACTTTTAGCAGAGAACCTGCTATTCTG
CGTTTAATTCACGAGTAGGACCGGTCCAGTTGAGCAAGGAAATTAAGAGAAGCATGACTA
TTACTTGTGCCATACATAGTGCATAACACTGACTGATTACCAGACCAGGCCGAACCAAAT
TAAGATGAGCAACAAAGCCAGCCAGCTGGTTAAGCGGTAGTAGTTTTTAGCAGGGAACAT
CCTCTCCTGCGTTTGATTCACATTCACAAATTGAGTACTCCTACTAGTTGCTTAAATCTA
ATAGTAGTAGCAGTAGTAGTACATTTGAGCAAGAAAATCAAGCGAGGCATCACTATTCTT
GGGCGCTGCCGCTGCTTATGAAGCAATCAAAAAGTAAACCAGCTGCCGAAACGAAATCTT
GCAGCTGCGCACATATCCAAGGGGCTAGCTAGCTAGCTAGAAGTGCGACGCCGAAGCAAC
CGAGCTGGAGCTGAAAATGAAGCAAGAATCTTACTTGGCGGCTGGAGGAGCTCCGGCTCC
GGGTCCGGCGGCGGGGGATTCACCCTTCGTCTTGTCCTCCTCCCCGCCCGCCCCGGCAGT
ACGGTGGAGCAGCGAGTCGGCGAACCCACGCTTGGCGCCGCCCCGTGTCGGGGCAGGAGC
GGGCCCGAGCGTGAGCGCGGCGTCGACGGCGGCCTCGTCCGCTGAGCCGCAGCCCGGCAG
GCCGAGGCGGAGCGCGAGGTGCGGGCCCGTCTCGCCCGAGGAGGAGCAGCAGGAGGAGGA
TGGCGCGGCAGGGCCCAGGCCGATGTAGTCGCGCGCTTGGAGATTCGGCGGCGGCATTGG
ATGTATGGAAGGATGGATGGAAGGAAGGAAGGAAGTCCGAGGAGGAGGTGGGGAGGTGTA
GAAGGAGCTCTTTTTGTTCGGGCCGGAGAGGGAGAGGGAGAGGGAGGGGTGGGCGGCGAG
GAGGAAGACGAGGCGGGGGAGGGGGGGGGGGAGGGGGGAGGGGGGGTGGGGGACGGG