morexGenes - Barley RNA-seq Database

Contig contig_1558570
Source Contig contig_1558570
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1558570 (5670 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1558570

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10181	1	300 bp	MLOC_10181.1	Available	Available	None
MLOC_10182	2	2548 bp	AK249272.1	Available	Available	None
CDS Structure of MLOC_10181

CDS Structure of MLOC_10182

Contig Sequence (5670 bp)

>contig_1558570 5670 assembly3_WGSMorex_rbca.fasta
AGAGAGAGAGAGAGAGAGATGGAATGTGCTAGTCCTTGTCGGTCGTAGCTTTTGTCGCTG
CCGGTGGCATGACAGTGTTAGCATTGAGTTGCAGTAGCAGTGTTAGCATTGGGTTGATGA
TGGCGTTCTTTTGGTCATAGCTTAGGTAGAAGTAAGTGATTGCATGTACAAATGTGTTAT
GTAGGAGCAGCAGCAGATGTGTGTTCCTTAATTATCAATCAATCTAGAGTGGAAAAATTG
TCTCACTTTGTGTGTGTTTGCACGTGTTGGCCATGGATTTTATATTTGTACGTACAAGAA
GCATGCATGCGACGGGAACATCAAATTTAATGGAGTGCAGTGCACCCAGACCATACACCA
TCCATCCCTGGATTACTCATTCTCAAGAAACGTTGTAGACCTCGACACCATGCAGCATGA
AGCGCGTGTGGGTCATGTACAAGGATGCGCAAACAAATGATGATTCAAGTGGCAAGGGAG
GAAGCAAAGTGTGGTAGAGAAAGGAGGAGGAGGATCCGCGTCGTTGGTGGAAGGGGCACA
TCGTGTGTGCGCTTTTGGAAAGCGCGGGCACGCACGCACGCACGCACGTCGGCGATGGGA
CTTGTCCCTCCCGGACCCGGGCAGAGGCACCGAGCGAGGCCGTGTGTGTGTCGGCAAGGG
ACAGGCAGACACCGGTGGGCCTCGCGGCGGCGACAAAGCGGCTCCCGTCCATGTCCATGT
CCATGGATGGATTGCCTGCCGCACGCGCTCGCTTCTTTCTTTCTTCCTTCCTTTCTTTCT
TCTCTTTCGGTTGAGACGCCGTTTTCTCCTTCTTCGTCCCCCAAACTCCAAAGGCAGGGC
GAATCTGCTGCTTGCTGCTGCGGCCCATAAAAGGAGACTTGGGCTGCCTGGACTGGGTTT
TAACTTCAACAGGTTCTCCTTAATCTATGGCCATGGATGTGAAAGGAATGGCTATGGATG
TCTTGTTTACGCGCGCACGTACTGCTACGTGCTACTGCCTTCGTGGAAGAACTAGACTAG
ACTAGTTCTTTCCAATTACAAATACTATGCTATAAAGGATGTACTTTAGTCGAGACGTTC
TCTTCATTCAGGCATAGGATATGTTCACGTTCCTGCGGTTTCGTGGATGCTCTCTTCTAT
TCCGTTTCCAGCACACGCTTTTCCGTTTTCGTTGCCTGTCTTCTGTCAATAATGTTGCTT
TCTATTACCATCTTTAATTACACATCACCACCACCACCAACACCTCCCCTAAAAAAGAAG
CACCAGTCCATCTTTACCGATCAGCCTCACCCACCCTTTCTCCATGGGGTTCCGATGGTT
GTTGGTTCAACACATCAACAAGGTATTACTACTTATATATGTCACTCGTCAGAAATTCAA
ACAACTAATAAATCAAGTAAATGAAGCTAACCTTCCTCCACCTCAGCTCTTCACCTCGCA
CTTTCCATTTCTTCACCTGCCGTGGATGGATTCGACCCTTGTTGGTGACCAGATCAACTC
CCTCCCTGACTCCCTGTGGTTAGTCTTCTCTGAGTACTTTTTCTTTTTTGGAACAATGCA
TCCAACCAGGGTCGGTCGCTCCTTGTATCTTGTGCCTGGACAAACACCAAGAATTCCTTG
TTTCTATCCAATAAATACCTAGTACCTACTCCTACTTGACTGCCAAAAAATGCAGAGACT
TTGAAAGTAGCACGTACCTGGACTGCTTCACGGTACTACATGGACCAGGCACTCAACAAA
ACTTCACCAAAAATGCAGCAAGAGACCCAGAAAATTCGTACAATTACCAGGCTTATAGCA
ACCTGATAGCAATGCATCTGTATTCATCCTAGCACACGTTTTCAGGACTTGTTACACCGC
ACGGCGCTCCAAATAGCATACAAGAAAATAGTTCACCACGGCACTCCAAATAGCATACAA
GAAAATACTTCACCCAAATAAACCTGGTCTGAACTGAACTGTCTATCTCGTCAAGTACAA
CACAAATTGCAGAGGGTTTCGTTATTATTATTATTATTCATCACTGGGTAACAGATTACC
CAAAGGAAAGGTATCGCCGCTTCTTTTCACTCGAATGGAACAGGTGAGCCTTGCTTCTTG
TTGACAATGGCCATGGCCAGGTACCTACTGCCCATGCCAATAGGCGTTTGTTCATCAGGC
CCTTCCCAGAATGGGGCTTCTCCGTCTCCGACTAGACGCCAGTAGCCTGTCCTCAGAGAC
TCGGCCTGCTTCTCGTCGCAGTTTTGCATAAGGGCTTCCACCCGGAAGTTGATACCAAGA
GAACCCAATAACTGGGATTGAGTCATTGGTCCATGGACAGAAATATCATCTGCAAAGATA
ACAACACGCACAAGCCTAGTAAGAAATGCTTGCCTTGCCATGAGAAGTGCAAACAAGCAA
TAAGAGTTCATCATACTCCATGCAAACCTGAGGCTTCCTTGGCAGAGTGCTTGATTGCAG
CAAAATCAACATAGGCACTGAGATCAGCAGACCCAGGGTCGTCTAAGATGTGAACGAATT
TGTGTTTGCGGATTGCCTGCATATATTGTTACTTCCTCATGTCATTTATCCAAGAGACTA
CTCTATTGCTTACAGAACTGATAATCGTAAAAGAACAGTCCATGAGATAATTCCTTGTGT
AAGCACATTATTATATACTCCCTCTGTACCATAATACTTGTAGTTGGGGGTACTTGTATT
AGTTCCCCAACAACAAGTATTTAGCTACAGAGAGAGCATAAACCAAATACTGCGCAAAAC
TAGGAATTGAATTCTGGTATCATGTGAGCACCAAAGACTGGCCAGTCTACTTTTAGCAAT
TTATGTCAAAGAGAGATATAAGAGCTGGACTAGTTGGAGCTTTGTACACACTACGGCCAA
CAACTTTTCAGTTCAACTCAGGCGTAGTGAAACAATTTAAAAATACAAACCTGAAGACTA
TCAGACACTATTCCATTTTTGCCATAGTCAATGATCAGAGCACCTCCACCATCTGAGCTA
ATTCTGTCTGCGATTTGTTCGCTGATCTCCATAGCTTTCGGGCAGACTTCAATCTGATCA
ACCTTCTCAAGCTCCTCAGGACTAGCCCATTGACAACGTTTGGAGAGGAAAATTAAAGAG
GCTGTAGGCTGCGGAGACAGAACAAAGCGAAACCTGCTACGAAGTAAGAATTACACATTT
TCTTAAGGTTAACAATAAAACTTCACTAAGATTTGTAAAACCTACGATGAGTCTCCTGCG
AGATCCACCATCTTTTCACACCAGCCGCGTGACCCTTTCTGCACGAAAAAAATGACTGTT
CAGTGGAATGACTGCACAGTAATTAATCTTTAAGCGTGATAAAATCTGAAACAGACTGCT
GACCAACCTGAAATTGATGGATCGGCAAAGCATCAAAGAATTCATGGGCAACAATTATGG
TGGGCACTGCAGATAAGACACTTAAAATAAGGCAAACAAGGGAAACCCCAATAAATATGT
TTCAAAGACAAAAATTGAAGATACATAAAGGCAACCCAGTTTCAGAATAAACCATATAAC
TTGTAGAAGAACACTAAAAGCAGTCCAATAAAGAGATTACAAGCATCAGAAGATAAAATA
TTTAAGCATCGACATACACCGAAGTATCTAAGCTAGCAAATAAGCAATGGCAGCATAGGT
GCTTGAAGATCATCCAACTAACTGGCAACATCATTAGCAAGTTGAGGACAATATATATTG
TGCAATTGTGTCGCTTTCGAAAGGAAGTCAACATTAGATCCGTCTATTCCTGGTCCAAGT
CATTATGTACTTTAGCACATTCTGTACCACAACAAATGAGTTAGACAATACTATTTCCAC
AAATCTCATGGTATAGTTAAAGATGAATGGCAGTATAAGAGTTTATCATACAAGTGCCTA
GATGATAACCACAGTTATACCATAGAGGTTAAGTACTTAGAAACAAGAAATCTGTAGGTG
AAAGAGCCCCTTACATCCTGAAGGAACCTGCTCGAGGGAGGCGTGCCAATAAACAGGGGC
TCCACAAAGCTTGCTAACTGTCCTTTTTTCATCACCAACAGATTCATCTTCACATTTCAG
AGTATTGTACTGCACCTTTTGTAGTGTAGGGCTACATTCTACCAAGTTAATGTTGAGCGC
CTTAGTGAAATTAACAAACTTTGCTGACCCCTATTGAAATGGACATATGCATTAAGAAAC
AGGACAGTAGAAGTTCGACAAAGGAGAGACGCAAGCAAGAAAGCCATACACGAAGTAAAT
CTGCCAAGAGAGTTCCTCGTCCTGGGCCAAGCTCAATCAAATTCACCTTCTCTGGTTGCC
CCATTTGCTCCCACAGACACATCGCCCACACACCAATCAGCTGAGGCAAAGCAGCAAAAC
ATTACTTACTCTTACCTCATAAGCCATAGCATAAGATCAACCAATCGAGTAAATCAACCA
CTGGTCAATTAAATTCACGACAGGAATATAAAACAATTACTACGATTCTGAATATCATAT
TTTCAAATAATACTATAGTCAGCAAAAACGATGTGCAATGGAAGTGCACATACATAAAAA
TTACAATGCCTCACAACCATTCATAAATATCACGAGGTGTATTGTTGCATTGTTATACAT
GAAACAGATGGTTCATCACTCTGCCATCCCTAAATTTCCAAGTCATTACATGATTCTAAT
ACCTGAATGCTGGAGGACAATCCAGCTAGGGAGCACCACTTACCTCTCCAAACATCTGGC
TGACCTCTGGTGAGGTGATGAAATCCCCAGATTCGCCAAACACATCGCGATTCATGTAGT
ACCCAGACTGTGGGTTTGTAAGCACCTCCTCCATGTACTCAGCTACGCTTATCGGTCCAC
TCCGGAACTAACCTTCCAGTGACAACCGAATCACATTTCCACATTGCGAGCAATAGAGAT
TTTAAAGACTTAATAATGGAGGGGAAAACATCAATACCTTTATGATGCTCTTAAGGTGCT
TCACAAGGTCAGAGTCCAACGGCGCCTCATGCGAGTGCTCTGCCGCATAGACCAAATGTG
CATAATAAGAAACTCTAAACCCCAATGTGCATGCGCCTAAGAGCAACTCTAATTGATCCC
GTAAAAGGCTTTAGAAGAGTAAAATTTCACTTTTGGTCTTCTAACCAGCACCTAACCGAT
CCCTTATAACGGTTAGAGGAGGAAAATATTTACTCCACGGCCGCCCCGAGGAGTAAATGT
GCTCAACCGCAGCTGGCTGGAATAAAAATCTCCTTCATGTGAAAGCCTCCTCGTGGCCGC
CTGGCGACTCGCGTGAAGCCTCCCGGTCAAGCACTCCCCCGACGTCAGCTTTGGGCCTCG
CTGGTGACCTCGTGGGTTAGGGCGACGTGTGGGCGGTCCACCGGACGGAGAAGCTCCTCT
TCCACCTCCACCACCAGAATTCGTCGGCAGCATCCCACTTCCATAGCGGCCACGACTAGT
TCACCGTCGATGTCCAAGAACCTACGGTCCAAGTACTCCGGCTCCGACTCGCCCGCGCCC
CAAATGGTAGCAGCGTCTTGGACAAGCAAGACGGCACCGTGGAGCACACGGGTTCCTGAT
CCGCCGGGGCAGTCCGCTTAGCCGAAGGCCGCTTTCTGGTGAAGATGGAGTTGAGCAAGG
GGCCGAACCGCGGGGGGGGGGGGGGGGGGG