Map Locations of contig_1558534 (7190 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1558534

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10162 1 1754 bp MLOC_10162.1 Available Available None
MLOC_10164 3 1590 bp MLOC_10164.2 Available Available None
MLOC_10163 1 741 bp MLOC_10163.1 Available Available None





CDS Structure of MLOC_10162






CDS Structure of MLOC_10164






CDS Structure of MLOC_10163






Contig Sequence (7190 bp)

>contig_1558534 7190 assembly3_WGSMorex_rbca.fasta
AGGTGCTTTTTTGGGTTAGAGTAGGTGGGGTCCAGAAAAAGAGAGAGGTCCAAAGTAGCC
AAATAATTGAGAAAGAGCATTTATTATCCATCTAACCCTTCCATCCAAACACCTTTAGAG
TTAAGAGTTAGTTCAGGTTAGTTTAAGGGTTAGAATCTAACTCCAACTCTAGCCAGGTTA
GAGTATCAAAACAGGGCCTAAGACTGATCTTCTAAAGTCCGTTGAGCCAACTGTTTGCCC
ATAACAATTCCATAATAAAGCCTAAGCTTTGGCTCAAAAAAGGTTAAGAGGGAAAAACAG
TATGCACCCAAGAGCCAAACAGCATGAACCCAAGAGCCGCGTGTCTAGAGGAATGTGTAA
TAATCTAAAGTCTCAGGACATTATTCAGTAAACTAGATCGAAAATTAATAGTGTGATAGG
CATTGAAACCTATGCAATCAAGCAGCATCCACCGAAGGGTTTGCTGAAATAATCAAAAGT
TGCAGGTACTCTTGCCTAGCAGCGGCCAGCATCTTTTACTTGCGCGCCAATGATTCAACA
ATATTAGCAGAAAAAACCCTCTGTGCTGACAAGATTTAAGATAACAGCTCGATGAAGTTA
CAAGGCGGATACCGTCGAAACTACAGCAGCATCTAGTGCGCAAAGCCTGACTGTCGGTTA
AAATGAACAGGAGGTGATGAAGGGACGCAGCTTGTGCCACTCCCCTTTGGGATCGTAAGA
ACATTTTGTGCAGCTTCAGAAAGGAATCAAGCAAATTCCCGGAGGCCAGTAAGTTCTAAC
TACAATTGAAGGTTCTAACTACAATTGAAGTTGCCTAGATTTTTATCGACCCCGTCATAG
CAAGGATGCATTTCAAAGCTTGAATAATATGCCATGATCCACTGTTTGATTAGGACATTA
AGGACAGTAACTCTGTAACATCTACACACTTCATTCCCTGTCACTCAAATCAAAATATAT
TTGGAGACAATGCAAGTTGTAATGCAAACGATGCAGTTCCCTCCACATTTTCTCATCCGG
GCTTGGGACCGGCAAAGGCAGTGTTAAACTACAAAACTACTAAACACAAAAATTAGCAAA
CACTACAACCAGTTATTCATCTAAGCATACAAGCCACACGGTCAATCAAAGGCAGGATTG
GCACGACACATGATTGACCAAAGGGAATAAATATTCACAAAACATTTGCACAAGATCATA
AGACAGAGACATAGGGGCATGAACAAGGAAAGCTATAAATTCCAGAACCTTAATGAGAGT
AAATAATTTCTCTAGTGGGGTGAGGGTGATTCAAATATTCAATCTTTAATATCTTCATCA
GTAGGCACAGAGAAAGCTTTCACAGTTTTGAACCATAAGATGTGTGAACAGATACTTACG
TGTCTTAAAAGTCCAGAATGTTTGGAGTATGAAACATCATGGGTGGCATATGTATAAGCT
TGATTTAAGGGTGTGCAATTGGCAGGAATCATCAAATTAGTATTTTTGGAAGCTCGAAAA
CCAATAACATGTAACTGAAGATTTGAGAATATGTAATTGAAGATTCAAGAATCTAGATCA
AATTAACCATTAGAGGACCGTAAGATGCGTGGACGCTTTGTGTCTTCAAATGCAGGATAA
CTGCAGTACGGAACAAACTGACATATGTACAAGCTACTTGAGTTGAAAGTATACAATCAG
CAGTAATCATCAAACTTGGCCAGACTATTTTACAAGTTGCCAACTTAAAATAGGAAGCTC
CCCAGCAAACCGAGAAGATGCATCGGAGATTCGTAATCCAGATCCCGCTGGAGAACCAGC
GGAAGAACATCACTTCTGAAAATCAATTCCATACCAACAAATCGGAATCATATTCAGTGG
AGATGAAACTAATCAAAGACATGATGAGGAGTAGAGTGTCCATAGCAAACTGTTTGTTCA
AGCTTCCAGTTCATAAGCTTCAACTCTCTGTTGTTTGTTTTGGTATAAAGCGATAATCCC
TAAGCTCTTTCTGGGTATATGAAGCCAACAACATTACACAACTAACAAAGTCAGGAGAGG
ATCAGAAACCAAAAATGCGACAGATTTTGATGGCTACCAGCATGGCTTGGGCTAAACAAT
CTGCAACCACAAGAAGGCAGAAGCAAAAACCACAATCAATGCTACACGCAAAAGGCAGGT
AAGACAATTGAAGCTTCTTCAAGAGATCAAAACTGAGAGCACTGGGTTTTTTCGGTTGTA
GGACGTCCCGTCTAGATTGATTCTCCAGAGCAACCTTTGAACCTTGTATATCCACCAAAT
CAATCTGAATATTTAAATTTTGTCTCCATAAGATAAATTATATGTCAAAAAAATTACGAT
GAATTGGAAATGTGCAGGGTTTAGAAGATCTTCAAACATATTCATCATCAGGTTGGACTT
AAATCGTCAGTTAGGACCTGAAAGGGACCAAGAAACCTTCGTTTGAACTTCTGCTTTGGG
GCAACGAAGCTGCCTATAAACAGCTAAATGATGCATCAAACAGTGACGGGATAGGGTAAA
GCCTGCTTGGCTGGGAGAGATCAGTTAGGCAACAACACCAGTTCCAGGTGGCAAACTATA
TTATCTCTCATCAATGTCAATCTGCAGGGACACATAATGAAAACCATGTCTAGGAAGTAC
AATGTTCAAAGCAAATCAGGAAAGATGGAGTCAACAGAAGAAACCCTGTGTAAACCAACA
GTCAAAACAAAGCACCTTCCGGAAAGCCCCATAAGCCCAATAGCTGGAGAACCAACAATC
GATATCAGAGATGTTGTAAGTCTAATTCAACTGTGCAAACAAAGAAAATAAATGAGGATC
AATTATTCAAACACACATCGCAAATTCTCTAATCCCCATCCCATGGTTGAACGATCAATC
CAACTTCAATCCAAAACAAAAACTTCAGCCCACAAGTTGCTATCTTATCATAAGGCATTG
AGTCATAACCAATCCACATAAACCATGAACAGTAAATCAAACTTCCACCCTCTGATTCAT
CACTCCACAACCGTCGCCCTCCTGCATCTGAAGGAGAACAGACACATACCCCACAAGCAG
ATATCAGCAGTAACAACGAGAACCCACCTCATGCTGAGGGATAACTGTACTCATGTTGAG
CCATCAGACGAAGATAAATCAAAGTACTTAAGGTATAGCCATCCAACTCTGACGTCGCCG
AGACCAGTGTGACCAAACATGGGAAACTGACCTGCCTCAAGTCCCCTCCAACATACTGTT
CATACACCACAGGGAGCTTCATTTCAAGAAACTGACCTGACTCCATAACCAATCCACAAA
ATCCGAAATGTTATATCCTGCAACCCACACTGGCAGAGACTAGAAGAACACAGGGATCAA
AAGTACAGGTAACAAATCGAACCATGGAGAGCTAGATCACAAACCAAAATATTTATCAGA
TTCCATGTCATTACTGGCTAAAGAAAAATCTGCAACCACAAGGGCAGGAGCAAAACCTAT
ATCAAAGACATGGCCAAGTAGCTAAATGAAATGAACAAATAGGAGGGCAAGAGTCTTTTT
GGGTTGTAGGATGTGCCATTAGTTGAAAGCTTCGGATTGTCCTTAGACTCATCCACCTTG
CAAATGAATCCGTATTACAAATATTGCCTTAATATAATTTGTAAGTTATGTAAGTTATGG
TGAACTGTAACAATACTCATAGATTTCGAATGTCTGCAAACAAATTCATCATCAGGTTGG
ACTTGAGTTCGTCAACTACAACCTGCAATGCGCAAGAGACCTTTCTATAAATTTTCAGTT
AGAGGGAAATGGTACTTTTATAAATAGCTCAAGCATGGATCAAACAATGGGCAGGAACAA
GAAAGCCCGTCTCATCTAGGAAGGCCAGCTATGGTTGACGGATGATAACAACACCGGTTC
CAAACTGCAGTTATAGCAATTTACAGGTCAGCATCTACAAGAGCAGAGTTTTACTGACTA
AGGCAGAGAAAATCTAATGTCATGGGAGTTCAATTATAGAATAAAAGAAAGGTTGAAATA
AGTTCAAGCTCCAGAAGAAACCACCATGCTGGGGCAAAATACACCACCTTCTAAGCCATA
TTATTCCAATTTCTGGAGAGCGACCAAGAAAGTTCCAGGTTGATGAACGATCCAAAACTT
CAGTTCAACACCAAAACATCCTCCACGCTTGACTCTACAAAACCACTACCCTTCTTCTGT
TGCATCCAAAGGATCACAAACACACACCAAAAGCGAGATAAGCTGCTACAATCAGAATCC
ACATCATATGCTTGATGCCGACCACATGGGAAATAGCCATTCAAATCTGATCTGACCTGC
CTCAAATCCCCTTCAAAATACAACACCCCAAGAACCTCTGCATACCAGATCTCCAGTCCT
GCAACCAACCCATGGCGGCCAACACAAATCAACCAGCAGCCAAGACACTGACCTGACACC
TTAACACGAAAACCGAGGGATCAAGAGTACAGATAACCAATCAAACCACAAGGAGATAGA
TAGCAAACCAGATGATTATAACAGATTCCGACTCACTACAAGCATTGTATTACGCCAAAT
CTGCAACTGACATATGGAGGGCAGAAGCAAAAAACCTAAATCAAGACAATAACATGTAAA
TGAAATAAAAATAAGAGGATACGAGATTTAAGTTTTTTCTGTTTGTAGGATGTGCCACTA
GTTTGAAGCTTCAATCTTGCACCTTAGCAGCTAAATCTGAATTTAAAATATTGCCTAGTA
AGAGATCTTATTACTTATCTAAGCTAAGGAATTGAGAAGATGGTAGGTTTAGAAGAACTG
CAAACTCAGCATCAGCTTGGTGGCCTTGAGTTCGTACACTAAGACCTGCAACGAACAAAG
ATACCTTTCTATAAATAAGAGGAGGTAAATGATAAGGGGAAAACTAGGATCAAACAATGA
GAAGGTGTAAATGATAAGACTGGGAAGGTCAGGTAGACAACAGAGGTTCCAATTATATAT
CCTTCGCAAGACACTATCTGCAAGAGCTGAGAATGACCAGGACAGGGGAAAAGTAATATC
TGCTGAGTTTGAACTTTGAAGTAATATTGAGTAAGAAAGCTCCGAAAATTTGAGCCACGG
AAGAAGAACCGCCATGCTGAGGCAATCAGAATTGTTGAGAGAATAATTGAACTGTGGAGA
AGAATAAACTGAACAAAGAGAGTTGATCATCCAAGCACAAGAAGATAATAAGTCGCTCCC
GGTAAGCCGAGTAATCCCAATTTCTGGAAAATGAACACCAAATCCAAAACATAATTGTTG
GAGGCTAAAATTGAACGGTGGAGAGGAAGGAATTGAATACACACCCAATTTCTGGACAAC
CATCAACGAACGAATCTAAATCCGATGTGCTGTCGATTAACTGTGCTGCGCAAACGTAAG
AAATAAATCAAATGCACATCCAAGCTGCAGGTTGGTGAGTAACCGCTGAACCATGATCAA
TCAATCAAATTATAACCATATATAACAGGAAGCAAACCTCCACCGTTTCTTTTCTATCAT
CGTCCCTTCAGAACTAGCGAGCGTCCCTTGCGGCTTGCCTCGCCTCTGCTGCATCTAGGA
TGAGAGCACAGACACATAGCAGCAGAAGCGGGATTCAGCCGGTGAAATAAGAATCCACGA
GGGCGTCCAATGAATCCACCTCGTATTATAACCGACGACGACGGAACTATGACGGCGAGA
GCGCTGGATCGGGAACAGGCCGAACACGGGCGACCGAGAGGCGTTCAATTCAAATCTGAA
ATCACCGACGGAGGAAGACGTGCAGGGGGGCCGATCTGACATGACCGATCGAGCACGAGA
GACTGGCCTTGCTTCGGCCCTCGGGTCACACAAAAAGTCAGAGCAAAATCGACGGAATCC
CCGATCGATCGCTCCCCGAGGCTGCGCGGAGACGGGGCCGAATATAACATCACGAGCACA
GGAAGCAAAGCCGGCGAGGAGGAAAACCGAACGCGATTCGAGACGAGGGGAAAGGGAAGG
GGAACCGTGGCGGAGACGCGAGGAGGCGGCTCAGGCGGTCGACGTCGGAGGCGCGGCCCG
AACGAGAGATCCGAAAGAGAGGAGAGGGGGCGCGCCTCGGCGGCAGGCTTTTATAGGAGG
AAGCAGAGGCGGTGGGCGAGGGGCAGCCTGACACGGCTTCTTCGCGGCGCTCGTGGATTA
GAGCAACTTCGATGTAAGTTCGGATTCTCGCATTATTTTCAAATTTAGAAGATTTGTAGG
AGACGTTTTCGTGGACGATGAGGTGGCTATGATAACTTCGTAAATCTTAAAGTAATACGT
CGGCTTAGTCTTTAGGAGGTGCTTATAAAGATATGTCCGTTCATACGAGCGATGAGTGAA
TGCACGTTCATACGAGCGATTGCGTGTGTACTTTGTTCAAAGAAACACGACGACAAATCA
TTGGGTCGTTCGTCCGTTTGGCCGTGTCCACTTTTTTCATTTGAATTGACCGATGCGTCC
AACGAAAGGGGACACATATTGTGACAATTGAACATCTGGTGGGCGAGCCTTTCTCGAACT
ACACCTAGCTTCGCTTCGCGCGCTTTCACCTGCCCGTGCTCCGCGTCCTGTGGGTGTACC
CGCCCGTGCCCCACGTCGTGCATAGCACGCTCGTGCTCCGCACCCTGCGGCGCGCGCTCA
CGCCTGCTCACACGACAGGTAGTTCGGCCAGCGGCGACGGCTAGCTAGCACACACGGCGG
GCACCTCGGCCAGCGGCGGAGGCTAGCAGCTAGCTAGCACGTGTGTGGACAGGCAGCTCG
GCCGACGGCTAACTAGCTATCACGCACACACGGCGGCGCGGACCCAGTGTTGTGAGATAA
CAAATCCAGGGAGGTGTGTCTGGTTCGGTGAGGAGGCGCAGTGGATGGTGGGTGTGCTCC
GAGGAGGAGGTGTGATGAACAACGACGCGTATGATCCGACAAGTAGGCGCGGTGGACAGC
GGTGTGAGTTGTAGCGCACGGGAGAGGCATGGAGGAGTTATTTGGCTACCATGTGGGCCA
CCGGCGAACACGAGCGAAAAGAAAAGGGAGCTCGGGTGTCCACTTTATGTTCGTCTCCGA
CCAATAACCAATTGTTGGGGAACGTCGCATGNNNAACAAAAATTATCCTACGCGCACGAA
AACCTATCATGCAGATGTCCATCTAGGAGAGGGGACGAGTGCGCACAGGA