morexGenes - Barley RNA-seq Database

Contig contig_1558449

Source Contig contig_1558449

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1558449 (2804 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1558449

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10116	1	2554 bp	AK373247	Available	Available	None

CDS Structure of MLOC_10116

Contig Sequence (2804 bp)

>contig_1558449 2804 assembly3_WGSMorex_rbca.fasta
CCACCCCCCCACTCCCCCCCCCCCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
CCCCACCCCAAACCGACGCGCACATCCATCCATCCGCATCGCCCCCGGCCACGGCCGAAA
CCCTAGAGATCCACAACCGCCGCGCGAGCAGCAAGAGGAGGAGATCGCCGCCATGAACGA
CCTCATGACCAAGTCCTTCATGAGCTACGTCGACCTGAAGAAGGCGGCCATGAAGGACCT
CGAGGCGGGCGGCGCCAACGACGAGACCGAGCTCACCCAGGTCTGCGGCGCCACCGACGA
GCGCCTCCAGGGCTTCTTCAAGGAGGCGGAGGCGGTGCGGGAGGAGATGGCGGCCATCCG
CGACGCGCTCGCCCGCCTCCACGCTGCCAACGAGGAGGGCAAGTCGCTGCACCAGCCCGA
CGCGCTGCGCGCCATGCGGGTCCGCGTCAACGCCGACATCGTCTCCGTGCTCGGCCGAGC
GCGCGGGATCCAGCGCGCCCTCGAGGACATGGACCGCGCCAACGCCGCGCAGCGCAGGCT
CTCCGCGGGCTGCCGCGAGGGCACCACCCTCGACCGCACCCGCACCTCCGTCACCGCGGG
CCTCCGGAAGAAGCTCAAGGACATCATGCTCGACTTCCAGGCGCTGCGCCAGCGGATGAT
GTCCGAGTACAAGGACACAGTCGAGCGCCGCTACTACACGCTCACCGGGGAGGTCCCCGA
GGACGAGGTCATCGAGCGCATCATCTCCGAGGGCCGCGGCGAGGAGATCATGAGCGCCGC
CGTCGCCGAGCACGGCAAGGGCGCGGTGCTCGCCGCGCTCAACGAGATCCAGGACCGCCA
CGACGCCGCCAGGGAGGTGGAGCGCAGCCTCCTCGAGCTCCACCAGGTCTTCCTCGACAT
GGCCGTCGTCGTGCAGTCGCAGGGGGAGAAGCTCGACGATATCGAGAACCAGGTGACCAA
CGCCAGGGACTACGTCCACTCCGGCAACAAGGAGCTCGGCAAGGCTCGTCAGCACCAGCG
CGGCAGCCGCAAGTGCCTCTGCATCGGCATCATCCTGCTGCTCCTCCTCATCCTCATCGT
CATCGTCCCCATCGCTACCAGCCTCAAGAGGTCCTGAGCAACCACACTACACCGGAGTTT
GTGACAATCATCATCTGGACACCTGCATTTGTGTCTAATATGCTGTTTTGATTTCGTATT
CTGCTACTTCATTCGTTGATTTGTGCCCCAATGTCTCTGTATCGTCAGGATTTAGCTGAT
GAAATAGTACACCGTATATCTGTTCAGTTAATTTACAGTCCTGAATTGCCAGTTGAATCT
TAAATATGTGCATGAGGGATGACGTTTGGTGCATTGAAGGGAATATTTGTTCTTCATTCG
TTGATTTGTGCCCGAATGTCTCTGTATCGTCAGGATTTAGCTGATGAAATAGTACAACGT
ATATCTGTTCAGTTAATTTACAGTCCTGAATTGCCAGTTGAATCTTAAGTATATGCATGA
GGTGCTTGCACTAGGTGTCTTATGTCACAGCTTGGTGCATTGAAGGGAATATTTGTTCAA
TCTTAATGTTGTGCTTGTACTACGTGTCTTATGTCACAGCTTGCTACTGATGCAGAAGCA
CAGGCAACAGGGAGAACAGTAATGAGATAGGTTGCTTTAGCCAAGAACCAAATCACTTGT
GCATTTTAAGAACCAAATGGTAGTGGATTCAATCCGATAACATTATTTCGTTTGTGTTAC
CGCATATTTAAGAAGTGAACTGATTTACTGAAGTTAAATCTGTGCATTTACTTGGTAGAA
TTGCTGCTTTCATCTCACAATGAAGCCTGGTCGAATAGCACGAACTAAAATCCTTAGGAA
GTAGTATGAAGATCTTTTGCCAGTTTTATATCTGAAATTTTAGTTCTGTTTTCTGTAATA
TTAAAATTACAACCAAAGGCTATCAAGAATCTGAACTTTTATCTCTTATGTTCAATATAG
ATGCAGGTCTCCAGCATCTTCACTTCTTCCTTTGCAAGTTCCTGTTAAGGTAACAGGAAC
CACACTGGAGTTTGTGACGACAATCATGTGGACAACTGCATTTGTGTCTGTTGTTTCGAT
TTTGTATTCTACTACTTCATTCGTTGATTTCTGCTCCAATGTCTCTGTGACGTCAGGATT
TAGCTGTTCATTTAATTTGCATCCCTGAAAAACCTGATGATTGATTCTATGCATCAGCTG
AGATTTGATGCATTAATACAGATTCGGTGCATGGATTTGTTGCTGTTGCAGAAGCCTGCA
GATCTGTTGTGTTTGCTGCTGGGTCCGAATCGCCCTGCGGTGTTAAATTCAGAACACAAG
TGCATGATCACTGTACCACAGCCACCTGGCTTGGCACAAGATAGGCGAGCAGGGTTTGCT
TGCGGCTTGGCTTCGTATCATCATTTTCTTCTTTTCTTGTTTGATGATCCAATTCATTTT
GAATAACTGTTTATTACATCAGTGGAAGCTAGTCACAAGCATATTATTATAGGACTTGTT
ATATAGTCTTAATGTGGTGCTTGTACTAAGCCATTGCTATGCGTCCTGCATGTCACAGCT
TACTGGTGGGGCAGAAGCATAGACAACAGGAAGAACACAGGTGAGCCAAGATTCAATGAA
CTTTTCTCTCGTGATGAACTGTCGGCACCAGTCCTACATTTTTTTCTCTGTGGACCGAGG
AGAAAGGGGGCTCAGCAGGAAGAGGATTGTACCATGAGAGAAGCACGGAGGTCAACCCGC
TTCAAATATGGAACATGGATTCTGGCAATGCAACGGAGTTGGGT