morexGenes - Barley RNA-seq Database

Contig contig_1558435
Source Contig contig_1558435
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1558435 (7940 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_1558435

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10103	4	2154 bp	AK354521	Available	Available	None
MLOC_10102	1	1691 bp	MLOC_10102.1	Available	Available	None
CDS Structure of MLOC_10103

CDS Structure of MLOC_10102

Contig Sequence (7940 bp)

>contig_1558435 7940 assembly3_WGSMorex_rbca.fasta
GAGGGGGAGGGGATGAGGGGGCGCGCGCGGGAGCTCCGGGGCAGGGGGGCCGCGGCCGTC
GCCGATGGTGGGTCGTCCTGGCTCACCGTTGACAAGCTGATGAACCACATCGTGTGGCTG
TAGAAGTCTGTCATAGTCCGTAGGTAGTCTGTAGGCTAGGCTGATTTCCCGAACTAAATT
GCTAATTTGAACTATTTATTTCTAAGCTACCGAGGGGAGCAAATATTATTCATGGTATAT
TGTAATTAAGAAAGAAGAGTGATTTAATGATAAAAAAACATGATAAGTATTGCACCAATA
CAATATCTATGCCACTAGCCTGATGGAACAAACTCAGCTCATGGAGCCTTGTTTAAGGTT
TTTTAAGAGGCGATGAACACAGAAATACAGAGCAGAGTGGGGATTGAAATAATCGGATTA
AAACTAACAACGCAGATGGATCTTACAAACCAAGAACCTGAAAAGGTTGGATTCGTTGTT
TGCGCAGACTAATCCGAGAAATCGAATGACATCACATAGAAAAAAAGTAACCAAGAACCT
GAAAAGGTTGGATTCGTTGTTTGCGCAGACTATCCGAGAAATTGAATGACATCACATAGA
AAAAAGGCCAAAGAAAGAGAGTGAGCAAGTTCATCAAATACAGAGAGGACAAACCTTTCT
CCTCCTGCGCATAGACGTGTTTATCTAACAATTGTATATCAACTACCCATGAGGCGGTTA
AAATCTTCGTGCACTCAACACTCATTGTAATAATAAGTGTCTAATATGTAGTTTTCTTAT
TCCCGTTGCAACGCGCAGGTCCTTTTGCTAGTTACACCTAAAGAATATTCACCAAAGTAT
CAAGCATTATTTTCCTTTCTGTTGTGGTGGCACAATGTGCAAGATTATTCCAGGCAAAAT
CATTGTATAATGTTTGTTTCCCTTTCATCATTTTGTTCATACAAGGAAAGGAGACCCTCT
CTTACGGTTTCAGTGTTATCGTTACATTGATGTTACATGTGACTATCTGACAGGAACACA
TCATGTGACCGCTTCTGGAGCTGAATTGCAGTAAGGCGTGTGCAAGCAGATGAATCTGGT
GGACATCAAGCACACCCAAGCAAAACCAAAACCTATCAGGAGCCCGCAGATACTCTTCCT
CACGTCCAGCCGCAGCGAGCGTCTGAAGACACGGCCAAAGCTCGGGATCAAAGCCCCGCA
TGCAATCACCATCCAGTAGTCCAGTCCATCATAGCCAATCTTCGCAAGGATTGCACTGAT
GGCCGCGCTTGGTCCTGCAAGCCCAGTCAGAGCTGCAGCTGCCAAGGCTCCTCGCCAGCT
ATCAGTGGCACCATATACACAACTAGCAACAGCAGCACCCCGTGGTAGACCGTGAAGGGA
GACTGGAAGAACCATGTAGCGGCCTAGACCATATGCCTTGCGTGCCGCCACACCAAGTGC
AAGCCCTTCGGCGTAGGCATGAAGGAAGACGCAGACGCAAGCAAGGAGTGATTGCTGTGT
GAGGACACTAAGAGAGAGCCCGCTGGACGATGTAATGACATTGACAGATGATTTCTTGTG
TTTAACAACCATAAGGATGCTTGCTTCCGCAAGATGGTAGAAGACCGAACCTCCTAGTAG
GAGGAACAGGGTAGTAAAGAGACCCATCTTTAAGGACATCACAAGTTGTAATGGCCTCCA
TGAAGCAAGACGGAAGGCAATGCCAGATGCTACACCAGTAAGAAGAGGGTGTGGCATGTT
GAAGGCAAGCGAGAATGCGACAAGTATAATTCCTCCAAAAAGTGGACCAAGACCAAATAC
AAGTGATACCAAAAAACCTGATGTATCTTCCAAGCTAGATCAGAACAAATCAACAGCATC
AGTTGAAAGTTGTACTAGTCCAAGTAAGATCCTTCAATAATATAAGAGGCACTTACCCGT
GGCCATCAGTGAATCCCTGAAGCACGGTACTTAATGTTTCCATAAAAGCAACAGCAAGTG
TTCCAGCAGAGGCTACTTGAGATGGAGTGGCTTCCTGCATGTAACACAGAAATGCTCAGG
ACTGAATTATAAAACCAATGAAAACAACAACTTCAGTCAACAATTTCTTGATGACCAAAG
GGTAGTCACCTTAAAAGCATCAGGAAGAACCTCTGCAATAACAATCCATATCATGCACCC
CGCAGCAAAACCAGTACAGAAAGGAAGCACCTTCTGAAATGCATCGGCACAAAGGAATGC
AGGCACAGCAACAATTGGCTATATTTACCAAGGAAAATGAAACGGGGTCACCAGAGTGTA
AAGGAAAGAATGTAACCACCAAAATGTAACTCAAAAGTGGAGATCAACTTGGAAAGCTGT
TGCAGATAAGCATATGAGAATTTTATTCACAAAGTAATACTAAGAAAAAGTTGCACTTGT
AAACAGATGTGGCCGTCCTTTTTAAGAGAAGAAATGTGCTGTACAGAATTCATTTGTACA
ATGCCTACAAATAAATAGTGATTGTTGTACGATTTAGTATTTAAGATCCTTTGTGATGCC
ATTTCTTTAATTGTGCTTCTTTGAGATGTTTGATGAGCTCGTTCCCACAAGTTATTCATC
ATAAATATTGACTCCTCTCCAACATGTGAAATGTTATGTTGATTTGTCACTTAGGTTAAG
GAGGAGTTTGGAGAAACTTTTTGAGCTTCACAGACGATTACCAAACTAGTATGTGAAACA
CTTAGCCTTATTGGACTACAAAAATGGCAACAGAGATGGTAAATTACAAAGAAAAGAAGT
ATGGCATGACAAAGAAAGCACTCCTACGAATACAAATATAGTACAAGTACTCATCGGTGA
ATCTATCACTGTATTTCATTATGGTATTTCAACAGTTCAGAGAGTCTGAGGTCACTAAAA
TTTAAAATCTCACAGGCAAATATGATCATTTTATAATTCATGAGAGTGTGCAACACTATA
GTGCAAACAATAAGCAACACACGTGGACATAAAAGACAAACATACTAGTTAATTTCACGA
ATGAGTTCTCTCATTCCAACTAAAAATATTTTAAATGAGGGTTTTAGTGTGGGGAGGCGA
TTTGGCTCCGTAGTACAGATGAACTAAGTACCTGGACGGCTGGACCTTCAAGTTTGAGTG
CAGGATGCATGCCGAAACCAATATCGTGTAAAATAAGGTGGAGTGGAAAATGAGGTATTG
CATTCAGCTGATCGCGATGGGGTGTGTCTAGCCTGCCAGCCGACGGAAGCGCTGGGTTGC
AAATGTTGCCTGCAACGGTGCTTGCGGCTTGTTGATGTCCCAACTTATGTACTGCTGGTG
CACGAAAATGAGTCCCCTCTGGACAGTGGTACAGAATTTTTGGTGAGGCCCAAGAGTTGC
AAACGTGTCATGAACAAGGTCGCATGGGCCAAACTAGTGAAGAACACACGGGTAAGCATC
ATGTTGTAAGGTAAGGTGATTGAGAACTTTGTAAACAGATCCAGTCATCTTCAACTTTGG
ACTGGAGCCATATGGTACTGGGTGACCCGGCAATCGGGTCGGGTTTGGTCAGTTCGACCT
CAACCAGACACATGCCCGAACCTTCTATCAGGTTCATCCCAAACCCACAACATTTAAGAA
TAATTATCATACTTTACATAATTACATTTATCTCTGACCAACATTCCATAGAATAAGGAT
ATTTTTTGTATGCTAAAATTGTTTCTTGCATCACCACCTACAGGGCTTGCCCATATCCCT
ATCTCGTTAGCTATTCAAGGTGGTACTAACTTGTTGTACATGAATTGCATGCACCAAGGG
TATCGGTGCCATGCAACTGGCATATCTCCTATGGAGGATGACTGAGTAATTTTTGGCCCA
TGAAACTTGATTTGTGTGGAGAAAGGAAAGGGCAAAGGCCTAGAGATGCATACACGTTGT
GTTAGTCTTAGACTTTTGGCCTACTTGTTGTACTTTTTTTTTTGCATCGTGCTTGATGTA
CATCGTTGGCTTGTCTTTAAATCATTGTACAGATTTACTACCCATTATATAGAGTATACA
TAGTGTATATTTTTTCTAAAAATACGTCTTATAAAATGAAATGCTTACAATTAATAATAA
TAGTTAATCGGGTTACCCATGGGTATGAAGTTATTCACATAACTACCCAATACCCTACCA
ATTCGGGTCAGGTGCGCCCATGGGCGCCTGAACCCATGGGCATGATTGCCGGCTTGATGC
TGGTGTGCAGCTACCATGGAGTTTCCCCTGGGTCTAGGCAACAGGTATGTGCCTTGATGT
GCATGGTGCCTGGATTATGTTTATGATGTAAGTTTGTTGACTCATTACGTGTTAGCAGCC
TGCCAATATTTGGCGATGTGACGTGGAGAGATTGGACGGTTCTCTGGTTCGTGATGATGC
CGACAGCCTACAGGTTTGTCATGCACCTTCCCCGACAATTAACTCAGCCCTAGTGGACAG
GCAGGAATATCTGCGAGGAAGTTGCAGAAGGTGAAGGTTGGGTGGACCATGAAGAACTTG
AGGACCTGGATGGGATACAGAAAGGTGTGGAGGAACATAAATTGGCAATGATTCATCGAC
GGGAAGACAGCGAGCCAGCGGTATCTGCAGAATCAACAGGGAAAATGGAGCCTCAAGACT
CCAGGTGGAAAAAGAAGTATGTTTCAAATGCTTCAATCGATGAATTGTTCACCCATTTTG
TACAGATTTCTGAAACGTAGCATTCCATACAAGGGCGAGACAAATTAGGCTGCAATCTCA
AACCATTTAAGTTTAGATGAGTTTTCTCACATGCTGAAGTACAGAACAAAACTGCAGTTT
TAACTTCAGGGATTTTGTGAACCATGTGCCAAAAAATGAAGTGGGTACCAATTATGGCAT
AATGTAAGTCAAGTGCAGAAGTGTCATGTCAGTTGATGAGTCCAACTTGCTCTTGCAGAG
TGGGGAGTCACCCTCAAGACCACACACCTTGTCCTAACAGGGTGTATATGATTAGAACGC
TGAAGGAAGAAGACACCATGGACTCGGTATAGCCAGATTCAGGGGAGGAAGAAGGTGTTA
GCTGGGAGGCTGGAGTCTTTCAATTACTAGGGAACCTGCTGGCATTCATGGCAAACCACC
ACGTCAGTCCAGGTGTGAGTGCTATGCGGTGAATGAGCATCAGGCTGCCGTCTGTACTGA
CACAGAAGAAATGGAGCAGTCCGTATTAATGTCTGGTACATGGGGTCTACCATTGTTCAA
TTTTTTTGTAAATGGACGAATATGCACTGGAATGCAGCTGCAGTTAACAATCTCGATAAG
AATGAGGGGTCCAGATTCCAGGCTCGTCTGGATCTGGGAGCCAAACCGATTAGCCGATTC
AGTGTTATTTTTCTAGTTACGAAACAAGGAATTAATATAGCTAGAAATTGATGAATGCTC
CATGACTGAATAATGATGATGCGTGTATCAGATAATACTTTCATATTTCCACTCAACGAC
AGAAAAAGAAAACACACCTGTGGTAAAGATGTTATGATACTCCATAGCATTGCCTTTTGT
GGGGAGACACCCCTAGATGATAGTACCATGCTTACAGCTAGGCCTTCAGGTATGTTGTGC
ACTGCTATAGCTATAGTAACTAAAAGACCTTGAGATAATCCTTTTGACCCAACAAAGGAA
ACACCAACACCAGAACCCTCGCCAAAAGAATGGAGTGTCATTATTCCAACAACAAGAATA
ACTTTACTTGCATCAGCACCTTTTATATCCAACATACTTACTTCTCCATGTTGCTCAAGA
ATCTGTGATCAACGAAATGAAGATACTGTATCAGCTAAAGGAAAATAGAACCAAAATGAA
TGGAGGGAAATATATTCGCTAATGCTGAAAACACAGCTAGGAGCCTAAGCTGATATGATG
CTAAATGCGGTTAACAAGGAAGTATATTCTAGTGGAAATTCAGATCGTTGAACTGGCACA
GCAATATGCACATCATCCATGCATTGACATTTAAGGTTTCAGGTAACCAGAATAATCTTA
TCAGCAGTCTAATTCTTTTAAATCAAGATAAGTCTACACGAGGGTAATTACTAGTGTAGA
CACATAACGAGTACCATGTTCACATTAACCTAGTTAGGCAAATGTGGCAGCACTGCCAAT
AGACCCGGCAAGCCCGCCAGCAAAATAATCACTAAGTGGCTCTTTGTGGGACATTGCTAA
GTTAAGTGGGCACTTGCGGTGGAGCTATATGAGGCACGATGTTAGCTGGTAAGCCCGCAT
ATGAGCAAACATTAGCTCCAGTACAGCCAAGCATACACTAACAGATCCTTCAAAGAAAAA
AAAACATCCACTATCACTTTCTGTTCAATAAAAAAAACACTAGCAGTACCAAGTTGTAGA
CTTGTAGTTACACAGAGCATATATAGCTAGCTCTCTTTATGGTCTTGCATATGCGTGTCC
ATCCTTTCCTGCTACGGTGTCCAGTCCTTTTCCGCCACATAGCTATATGCAGCATGCCAC
TTCCCAGCGGTACAGGGCTCATCGAGGCCATGCGTTCGGCACAGAGGCTGATGCTCATAG
TTGACGAAATGGAGCTGTACAAGAAGGTCATGCCGACGAATGTTCATCGGCTGGTTCAAG
GAAGATACAGTATCCTCGTTTACCCGTTTGAGGCGAGTGAGCACCACCGAAAAAGTTTGG
TCTGTCAGGCGGTATTACCATTCGTGAACTGTGTTGCCAAAACCTGCGAATGGCCAGCGC
TGAGCATCCCTCAACAGAAACATCAGACGAGACGCGCGTAGGAAGCTCCATGCTGCTGAC
CATTTTAAGTGGGTATGTCCACCAAACTGGAGTAAACGCTCTGAATACCAACCGCATCTA
AGAAGCTGGCTCAATGCTCACATAAAGAAATTTTGGCCAGAGCAGACTAATGTGTTCTGT
CCACTGGACATGGCACTTAATCCTGAAACCTAATGATTTTGTTGAATCCTTTCATTGAAA
CATCCAGCTGACTTCACTATTACACTTTCTTCAACTGCCTGCGCTTCAGACTAAACCCTG
GCAGCTAAAAAAAATTGTGGATCCATGACTATGTAAGTAGGCTCATACCGCTAAACCGTC
AGGATGCTGACAGATACTTGGACAGAAGAAAACAATTTCGGAGTAAAGTAAAGTTTTTGT
CTTCAGCTAGAGCATAGTGCATCGTAGGTGCCTTAACTAGTTCTTTCGAGTATAAAGCAA
CATTGTGGTTGTATATCTGGCGATTAAATTACTCAATGTAAATGATCAATGATATCACTG
AAGGACAAAGAGTAGGAAGCAAGATTTACCTTCTTGCAAAGCCAAATAAAGATCCCACCA
CTCAAAATCCCAAAAACAACCCACCTCCCACTGCCGTACATCTGACCTTCTTGCACAAGA
TCGAAACTCGCTGCCAACATCACCCCGGCTGCCAATCCATTGCAAAGGCCTGCCCATTCG
GCCTCTAGCTCCAGGAAAAAGAAGGGGACTGCTCCCAACCCTGTTGCCGCAGCCATGGCA
AGCGTAGACCATGCAACAACATACACCGACACCCTTCCACCTTTGGACGCATCCTGTCTA
CCAGCATCCTCTAGCTTCACATCTGGTGCCTCCCGTGTTACACGCACATGACCAATCTCG
GTCTGGGCAACCGCCGAAACTTCCCCAATGAGTAGGAAGAGCAGGCAGACTAAAACCACT
CCGGCTTTTCTATCCATGGTTACTTGTGCTTCAGATATTCAGCAAGCTCATAAGCCCCGG
GCGGAATCAGGGCATTGGTCATAATAACAAATCCATCAAGTAGTTATCTCAACACCCGCC
TCAGTCTGGCAACAAATTATTCACGATTCCTGGATGCAACTGCAAGAAGGCTCCAATCCT
GCAAGCCGACATTTGACACGGTTAGATACAACAAATAGGTGACAGATTGAAGAAAAACTC
CACCCCCCCCCCCCCCCCCC