morexGenes - Barley RNA-seq Database

Contig contig_1558427
Source Contig contig_1558427
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1558427 (6072 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1558427

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_10100	7	3440 bp	MLOC_10100.2	Available	Available	LOC_Os07g42354.1, FRAME:-1, EVALUE:0.0, 13107.m04420 protein PPR repeat domain containing protein, putative, expressed
CDS Structure of MLOC_10100

Contig Sequence (6072 bp)

>contig_1558427 6072 assembly3_WGSMorex_rbca.fasta
ATCGTGCGTTCCATGCGTGTACCAACTTCGGTCCCAGCGCCCACATTTGTCCCTTCGGTT
CTCACCGACTTTAGCCTACCTATGACATATGTTGTGAGTATTCACCGACAGTTTTAGTTC
AAAAAATTGAACCTATGAATTGTTGTACTTCGGTACATGGCAATATGAATGTGAACACAG
AAAGAGACCAAAGCTATATGATTTTTTTATCACGCATAATATACATGGTATAAAGAAAGT
GTGATGCTAAAGGAAAAGAGGAATATGAAGCAACGTACAAGTTTCTCAACCACAACTGCA
CAATTCTATTCAGAGCACGCCAAGTGCCTTCTCCCATGTTTTCTGCTACAAGTATTATAG
CCTGCACCTGGCACATTAGCACCATTTAAGTATCACCAACGAGATGGAAACTCGCTGGAA
TATGCTGTAGAAAATTCTGAGCAAAATCTGCTACCTCTTCCTCTTGAGCAGTACTCTGAA
GATCAAGATCATCTTTGATATGTTCATCCGCAGAAGTCCATGTAACGCGAAACCCTGATG
AAGGCATCAGCAAATATTAACACATGCAAACCAATCGTCCAAAGGAAGATGCAATTCAAC
AATTTTCGTCAGAAATATGGCTGCAAATAATGCATGCTTGTACATTCAGAAAACTAACCC
AGTAGAGATGCACCAGAAGGATGCGGAAAAGGTTAAAAAAAAACATGCTACACTGTTCTA
TACATCTTTTTAATATTTAGTCGTTTTTGGACTATATTTTGCTCAATTTACTGAACTAAA
ACTAAATCCACCTAAGCTTGCAACAGGGAAGCAAATGCACAAATCAACATGCGTACAAAG
AGGGTCCAAAGGTGCTCTGATTTCATTAAACAACAAAGGTATGTATGGAACTCCCTAACT
CATACATCGACCTATTAGTGTAAGATATTATAGGTGCAGAACATTTCCCTGCAGCATGGT
GTAATACCAATATACCATTTCGAGAGGTCCTTTTCTAGGGTTGGCATGGAACCAAGTGGT
GCAGAACACCGACAGTACAATTTTGGTGTAAATAAGGACTGGAAAAAAAACAATATAACA
GCTGCAAACCTGGTAAACTGTAGGTTATCATATATATCTCTGAGATTGCCTAGATGCTAC
CTACCACTGTTCACTTGACACACAGACACCAGTCTAGATCTGATCCTGGGTCTGTAATGG
CATGCTGTATGTCAGATCTCATCAATCACGGCTAACTCTCTGCTTTCAGCTCAATGAAAA
TGCTTGTCAGTTGACTATCAAATAGGAAAAGTTAAGGATTACGTAGATAGCCTGAATGTG
CTTATGTCTTTAGACCACTTTGATACACAAGGCCCTCACAATTCTAGCATCTAGTGTACA
AGCTCGCTACCAGCGATGAGAGCTGCTCACTGCATACCAAGTTATTCAACTGCTCTGCCT
CCCCACCACCAGTGAATTGTTTAAAGTAGTCATTTACCAAGTTCATAGAGCTCTATATGA
AAACTTATGATATATCCTTATCTTCCTGAGGGTCCTAAAAACTATCTCCATCATTGCCAA
ATCCTAATATACTACTCAGCTTTTCATCCGGTGTGATGCCTGTCTGGAGCATACTGTTGT
ACATCATATGAGCTTTCTTCTCATCTCCAATCTTGAAGTATCCAACTATGATATCTGTAT
AAGTTACTACCGTAGGTGCAAGCCCCTTATTTATCATTTCTTCCATCAACCACTGTGCAC
CATCCATCGCAAGGACTTTACTAAAGCCACCAATTAAACAAGTATAGACAAAAGCATCTG
CTGATAAACCCCCTTTCTCCATCTCACTAAAAGTTTCCAAAGCTGCCTTCATGTTTGAAC
GCTTACAATAGCACGCAATAAGAGATGTATACAAAATCCTGTCTGGTGTCAATCCCTCCC
AAATCATATGCTTAAACAATGTCACAGCTTCAGAAAGTCTGTCATCATGGCAAAGACCAT
TTATTAGGCTAGTATATGTAAATATATTAGGTTTTGTACCCTCAGCCAATATTTTATGAA
ACAATCTGAAAGCTTCCTGAAATTTCAGTGCTTTCACACAGCCATCGACAACAATACTAT
AAATGGAAGTATCAGGATCGTAGCCCCTTTTTATCATGTCTGCAAAAAAGGCCCACACAT
CATCACATTTGTTGACCTTGCACAGACCATTTATGATAACTCTGTACATACAAAGGTTGG
GAACAATTCCAAGCTGGCGTACTTTATCCAGGAATAGGAGGGCTTCATCGATCATCCCTT
CTTTGCTGAAACTGTCAACTAGAATGGTGCATGTCACAATGTTCGGGCTTATTCCCTTCT
CAAACATGAGTTCGAATACTCCCAATGCTTCTTTTAGGTAACTATGTCTACAGAATGCAT
ATATCAGGCTAGTATAGTTGTAAGCATCTGGAATAAAATTATGATGAACCATGTTATTCC
AAAGGTCATAGACAACCTCTAGATCCAAATGTTGGCAACAACCATCAAGAAAAATGCTGT
AAACTCTGTGGTCATGCTTGACACCTTGTTCTTTGAGCCTCCTAAACAGGTCAAATGCCA
ATTCAACTTTTCCAGCTCTGCAAAGACCATGCAGAAGTGAAGTATGACCGACCAGAGTAG
GAGCAATCCCATTTCTTACCATTTCAACAAGCACCTCATAGCCTGCCAATAGATCACCTT
GCTTACATAACCCATCAACTAATATGCTATAGCTATGGGCATCTGGGATAAACCCACCCT
TCTTCATCCCATCAAACACCTCCATGGCTTTATGAACCTGATTCTCATGACAGAAACCAT
GAATCACAGCATTGTAACAATAACTGTTGCGAGGATAGCCTCCCTGACAAAGCATTTGAA
GAAAGTTCCATGCAGATGACCTGTCTGGTACGGCATAGCCCATAGAGGTAAGTGCCATAG
GTTACAGCATTCGGTTTCACGCCCTTCATTTCCATTTCACACAGAAGCTCAAAAGCATCC
CCCAAGCATAGCCTATCTCCATGTGTATAAGCACTCATAATAACTGAATAAGAGTACACA
TTTGGTAATGGACCAGAAGTATTCATATCATCAAACAAACTCCTCGCAGACATGATTTGA
TTCCTCTCCGCTAAACACTTCAACAGGAAGTTGCACAACTGCAGCTCGACTCCAACCTTC
TTGGCCTCAATGTAAGTGAGAAGAGCATCCTCAAACATAGACAACTCTACAAAAACTCGA
ATAACTGTAGCATGAACTTGCAGTAATGTCATTGACCCACCCAAATTGCTGACCAACATA
GGTGCCAACTCAAACAGCTCTGGGCCGGCACTTCCACAGTAATCAACAATGCTCCGCATG
AAGCACCGTATCTCTCTGATTCTTTGCGGCAAGAAGGATTGCATAAGCAATGCAAACAGC
CCAACTGACCGGGACAGCCCATATAACTCCACACACTCCCTGAAGGTAATCTTCCTGGCC
TTGCTCCAGTTTGATGTACGAACTGCTAGTGTGATCAAGGGAAGAAGACACTGGTTTCTA
TACTCGCCGCAAAAGAAGCTTCCACCAGGTTCTTCATGATCTGAGCTCTTCAAGCAACAA
GCCACAGAGTGAAGTCGCAATGCCGGAGGGTAGCTTCTTTTTACAAGGGCTTGACGCATG
AAACCTAGCACTGCTCGGTGCATAGAAAAGGGACGCTGATCCCTGCCTTATATTGACAGC
ATAAGCCGAAGAAGGAAGAACGTCCGCTACTTTTGCACTTCATGCAGCAAACTTCCTTGA
CAAGTTAACAGTGAGGACCACCCAGGAAATAATAGGACAAGTTAGATGAAAAATTCCTGC
AAAAAAAAAAAAAATGTTGCAACTGTTATCTTCAGTGAAAGGCTCACTTAGAGCAACAAA
TCGAAGCTTTCTGTTTCCAAGAACTTTCTAACATATGGTGCAGGATTAAATTTAGGTTGG
ACGGGGATCATTATACCTGATTAAAAGCACCCAACCAAGGAGTAACATTTAAAGAAGGGA
ACAACAGTGGAAATCTGTTTGTAGCAAACAGAAGAGCTCAAACATGAAGAAAAAAAAAAC
CGGCAGATTTAGCATGTTTACTGTTAGAGAGCAGCAACACCCAAAAATGAGGAATTATGC
AAACATAGCAAGGATATTGCTTAGGCAGAATTAATTTGTACACAGATGTGAAAACATTAC
TCCTGACAGAATATGACATTACAACTTGGGCTAGATTAAAGCTGGGAGCACAAATGTTGC
AATTTAGGCAGCAAAGGTAAATTATATGCAGTCGGATGGAAAAGAAAAAAAAAACTAAGC
ATCTTATAGGAAAATTTTCGTTGCCAGTACTCACTAGTCACTACTCAGTACTATAGAAGA
ACTATGGTCTAGCTTTGCATACTTGTGAAAGAGCGGGGGAACCTTTTATTGGAAAATCAA
CCCAAGTCAGTTAGCGCAGCTTCGATTTAAGGGAGACAGCCTGCTGTTGCAGCTCGCCGC
CGGCAACCTCTTCTCGTCGTTCTGTCGCCATAGTCGCAGGAAATGGCTGATGTCCCCCCA
CCCACTCCGGTGAGGTCCTGCGACCCCTGGCCGTGGGGGCTCTCGGTCGCGGGCGCCGAA
GCAAGGGGCGGTTGGGGAATTACCACAGCCAGAGCCGGCGCTTCCCCCGCTTGGCCGCTG
ATTCAGTCACGCGCTCAAGCCTCCGGCCTCCGGCCGCCGGCCCCGCAGTTTCGATGCTAG
CGGTGCAGCCGAACATGCTCGCCGAGCCCCGCCGCCGCGCGCCGTCGCTCTGCTGGGGTT
TAACGAAGTGTTTTGTTGGGTCTCTCCTCCACAGCTAGGTATGCTGGGAATCCAACGCCG
ACCCGGTTTCATCCAACGGATACGATCCATCGTTACAGGCTTACAGCGTGAGCGTAACAG
ATGGGAGCTGCTGCCGCAGCGTCACTTCCAGGTGGGCCCGCGAGACACCAACGAGAGGCG
GAAGGTAGGGTGAACTGTACAAAACCCGAATGACTGGCATGAATGCCGACGACCGGATCT
TTCTGAAACGTGCATCAGCCTAAAAGTTTCCTTTCCAATTCATTATTGAATGTTTGATAG
AGTGTATGAAGGGTGTATGAATCCATAATCTTTATTTAATAATAAAGCAAATATTGCTTC
TGGTCGTACGTAATGGATGTTTTGCAGAAAAACCCCTCACGTTGCACATATTCAACCCGC
ACTACCAATTTAAGTGGAGAAAACGTTTCAGTTTTACACAAACCCCCTCCTCCCCAGTTC
ACCGCCGCGTCTCCCCTTATCCATTCCAACCTCCGCAACCGTTGCTCACTGCCGTCTCCG
GCGTGGTGCCGACGAGCGCCACCACCGGGCCAGGCGCCGATGGAGATGCCCTCTAGCCCC
CGAACCCTATGGTCTCCACCACCCAAGCCACGCCCTCTTCTGCCCTTGAGCCCTGCACCG
CTGCCGTTTCTCGCTACCGTCTCCGACGTCGATGATAAATGCAACGTCACTCCGACACAT
CTCGTCGCCTGAGCGGCGCATCTCGTCACCTACGCGGCATCCTCTACCCCTCCCCTTTCT
CCTCCTCCCCTCATCGTCGATCGTTTGCGTCCTCCGAGCAAAGACCCCGTGCGGATCCGG
CACACACGGTCAACGCAATCTAGCGGTTGCTAGCAATGCAGGGGGTCCGGCGCTCGTCGT
CCTTTGCACGACAAGAAACAGAGCAGCGACGGCTGGGACTTCAGTGACGGCGCAGCGCAG
ACGAAGCAGACTTGGCGGTGGTGGATCCGGACGGGAACCGTTCTAAGAGGCGGATTTGGG
GCGCCTACCCCAATCACGGCGACACGGGGCTCCTGGGCGACGCATCTGGAGGTCCATACA
GGAGGCGCTACCGCGGGCACTGCTCGATCCATAGGCCTGTCGCCGCAGCCACCGGCGGCT
GGTCTTCTTCTCCGGCCATCTGTCGTCCTTCTCCCTTCCCCATCCTCTGTCGTCCTCCCC
TACCCTCTCTCCCCTAATCTTTCCTGGAACACTACTAGGAAAAGGCATGCTAGTGGCGCA
CCTGTTTTGGCT