Map Locations of contig_1558326 (8007 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1558326

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10055 3 3182 bp AK359819 Available Available None





CDS Structure of MLOC_10055






Contig Sequence (8007 bp)

>contig_1558326 8007 assembly3_WGSMorex_rbca.fasta
TTTGGCGCAGCTTTGACCGGACATTTAAAACATCTCTCTTCGCATATGGTAGTATCCTGC
GGTCTCCGCCGCGCACCCTTGAGAGCATCCCCATGCACGATGAAGTTGAGAAGTTTACAT
CATGCATGGTCATTATGATATCCATATCTTCTTTTGGAATGTTGCGGTGTGAGCGGTAGT
ATCGTACAAGCTCTGGCTGTGGCATTAGGGGGTGCGTGTACTCCGCAACAAAGTGTGATA
CAAGCCACTTGTGTTCCCCTGATTCCAACTATCATCTTAGCTTTGCAATCATGTCGCAAC
AACCTATTCTTTTGACGCTTGTTCGTAACATCCATTTCGAACCAACTATCTTTGCTAAAC
GAGGCTTCACCAATTGATAGACCCTCTGAAGCAGTGCTATTGTTAGCTTTGCTTCCTGGC
TTCCCTGTGTGGACACACTCAAAAACCCTCTTGATAAGTGTCGTATGACCTTTCTTTTGG
TTGTTTCGAGAAGCGCCTATGTGTATTCCGAATCCAGTCTTGAAGGCATATTCATTGTAA
AATGTTCTAGCATCATCAACAGTGTCAAATTGCATGACAACAAATGCTAAAAGTGGCTGC
GATGAAATCTCCTCTTCCTCATCATCACAGTCATACATTGCAGCGATTGAGTTGAGTCCA
GCATGTGAATTCGTTCTTGTATTTGGTACAAAGTCATACGTCGCGTAGCTATGTTGAGAT
GTTGTTCCACCATGAGCATCCTAAAAAAAAATCAAAAGTACATCCATACATCAGTACTTT
TTAACAACTTGCAAATGCTGCGTGGCACTAATTATTTTTGTTACATGACATAAAAAGTTT
GAAACATGGCATTACCAGTTTTTACAGAAGTCATTTTTTTCATTTTTTTTGTAGGACAAG
GATACAGGGATAAAACATTTTTTCACAGCCGTTCACAACAATATTTTCTGAACATTGTAG
GATAAGGATACACATTACCAGTTCACAGCAGTTTACAACATTACCATTTTTTTACCATGA
CTTTACCAGTTTTATACACACATTTTTCTGAACATTGTTGGATAAGGATATAACATTTTT
TGCGCAACAACCATAATGATTTCTTTTCTGAACGAAGACTACCATGCTCAACTCAAAAAA
CCAGGAAATCACAAGCATTGCTTCATATTTTGATAGCAGAAGGTTTATTTTAGCATAGTG
ACATTGCAACACAAGGTGTTTTTTATAGATGAACTCACCCAATTTATAGAGGAAGCGTAG
GTTGGATTTTCTGGGAAGAACACAACTGGATTTCTGTAGTTGGATCCATCTGAGCTTCGA
GCAAAAGTTAAAGCAACCATGTCTGTGTAGATGTGTTGCGCCATGATGGTCCAAATACTG
GGTGGGGAGGAGGGAGTCATCGATGGCTCTGGTACTGCGATTCGCTGCAGGCGAGCGAGA
TATGCCGGTGGAGCGGGGGTGAGGGTGGAACGACGACAGAGGGTGGCAGGCGGGAGGGTG
GGTGGGGAGGGCAGAGTCGCCGGTCGCGTCACCGCCCGCGATCCGCGGGGATTCAGGTGG
GGCGGTGTCGGGCTAGTCTGTTTTGTTTTCTTATAAAGTTTCAATGCAGCAAGCCAAATG
CTGCGATGGGCGTCGGTGCGCTGTTGCTTAAGTGGGGCGGTGTCAGGACTTGATGGGACG
ATGTGGTCTCCTTCGATCGGACTGCTAGTGAGGGGGGCTTATGACTGGTAGAAATCAAGG
CGGCATATTTGTAGCAGCTGCTTTTTTTTATGCCCTAAAACTGTTTTTTGTTGCTCGGCA
GGGGAGAAAACGTAACTCACCCAACCTGTCGACCGGACCCGAGCAGGCGAGCTGAGCCCA
GTTCACGCGACGCGCCGGCGGCCGGCCTACGTCGCGTCCCTCTTCGTCCACCCTGCGCCG
CGTTCCGCCCACCGTAGCGCTCCCGCCCTCCGCGGCGCTTCCCTTGCCTCCTCCGCGTCC
CTGACCTCCGCCGAGCTCCCTCGCCGCATACCTAGGTTCTGCTCGGCCACCGACGGCGGC
GCCCCGGCTCGGCGCAGGGGGAAACGGTGAGTCATTCCGGCTTTTGCGTCTCTCTCGACT
TCCCTGCTTCAAGCTTTCGGTCTTAATAAGTTCAGTAGCTTCAAGGATTCAATTCTCCTT
TATTGATCGATTCCAGATGGCGGCGAAACTTGAACAATCTTCTCCTGCCCGACAATTAAA
GCCTATCATGTCACCATCTTTGCCTCCCAAGTTGTCAATGTTCGGGGCAAAAGCGGGATT
CGTCATACCAAAAAATAAGATACCAGGCTCAATGATTATCCGCAAGGTTGAAGCACCAAC
TGTCCCCAAGGAAGAGAACCCTAAACCTCTCAAAAGAAACACAAAGTGGGGGCCTGATCT
TACCTCCGATCCTGCCGTCAGGAAAGCCAAAGCTCTTGCTTACCAGGTACAGTAACCGTT
TTGACATCAAGTATTATCTAGTGCTCTCCTTCCATCCATGTACTTAGTTGGACTTGTAGC
ACACTCTCAGAGTACCTTTTAATTTGTATACCATTTGCTAAATTATATCTATACTATTAG
CAATGCAGAAAGGGTAACATTGAGCTTTTGACTATGGGAAATAGGACTTTGCATCGGTAT
AATCCTCTGATATTGCAATGCAGACAACTGGAACACTTCTTTACTGTTAAGCATGCAAGA
GTTTGTGCAACTATGTTTCTGTGTATCTTTAGCAAACTCAGGCAGGTGTCATACTCATAG
TTGCATTTCTACATCCAATCATTAACAGTAGAACCCAGCGTTGTGCATTCTTCTTCTTGG
GTATGCTAAGACGTGTTGTAAATAGTTCCAGATCGCATTCAGTTATAAGGATCTACGCCT
TGCAATCATGTATTCTTAAAACACCTGTTTCTCCTCATAATGTGTGAACCAGTATGTTAT
TTGCATTTAGATACGCTCAATGATGTGGATACGTTTATTTAGTTACTTTAGCAACGATAC
AATCATCTTGACACCTTGTGTCTTTTTGTGTGACTAGAAAGTCATGTAAAACATCCTATT
GAGTTGCCTGTAATTTCACATTTCTCTCCAGGCAAGGTTCAAGTATGGTTGCGGTAGTTC
CTCTTCCTCTGGCCAGACAGAAAGAGCATTTTATTGTGATTCTTTCATGTAGGAAGTTTT
GATTGCCAGGTGTCATTAATTCATTATAGTGCATGAGCAGACTCGAGTGGAGCAGATTAC
AAAAGAGCTGGCATCTGGAGCTCTAGTGATAGGAGGAAACGAAGGCTCATTGTTTACGGC
AAAGGGTTCAAGTTCTGATGGTGCTGAAAATCCAAAAGAGAATGAGGTATTCATTATGTG
ACCACCATGGTGTTTCCCCCTTTCTATTGTTCTCAACATTTGGATCTAGTCCTTTAGTAT
GTATTTTCGTAACTAGTAACCTCAGGTGCATGCTTTATAGAGGAAATGAGTTATACAATC
AAATTATGATGTCATTTGATATGCTTTTGAAAGCATGCTGATTGATGGTTATGGTTATGT
CAAAACGATTGTAAATTCTCTTTTGATAACGTCTTCCTTTTTTCCTTTCGCGGCAGGGGA
AGATTAAACTCTTGGAGCTTGAAAAACGAGAAATTATTGGTGAGAGAAATTCTTCTCTTA
CTGTGTGTCTTTCACTTCATATTTTTCTGAATAAAGAACTACTGCTGTGTCAGTGCATCC
TGTCTCTGATGGAAGGTTGCTTCATCAAGGGGGCATACCATGTTCAATATTGCTTAAGCA
TATTAATTATGCAGGGACTGAATGCCTCTGTATTAGACTGTTAATCATGCTTTGTTGTAT
TATGTCTTAAAGAAGTGTGTTATTAACTTGACTGTGTATTCATTGTAGGAGAAATACTCC
AACTAAATCCAGCATACAAGGCTCCTGATGATTACAAGCCATTACTTAAGGAGACAAAAA
TCCCTCTTCCTGTACGTAAATGCACTGCTGTTTAATGCTTATTGATCAGTTTTCAGTTTG
CACTTGTACCAGTAGTTGTTTCACTTGTTTGTAGTGGTGTCCATCTTCCATTCATATCTG
AAGGTTCTCATGTCAGCTTTGTAGTGCCATCTCCTAGATTAACAATATCTTCTTAAATAA
AATCTAAATCTGTGTGGATAACAAATTTGAGACTGCCTTCTCTCTGTATAAAATGTATTG
CATTTACCTTGTGCTATTGGCTATTGTAGACAGAAGCACATCCAGGACAAAACATCATTG
GGGTTCTTATAGGACCTGAGAGAAACACCCAGAAGCGGCTACAGGAGGTATTAATGGGTT
ATTCTTGGAAACCTTCATTTTAATTGGTTGAAACATCCACGAGAATACTATTATTTCTTA
GAGTGTACTGTTACATCATTTATCATATGCCAGGAAACTGGAGCTAAAATACGAGTTTAC
GGGACTAAGAAAGGCAGTGGTGAAAAGGTAAACTTGTTTCCTTGATTCCTTTTAACTTAT
TATATTTCTGTTCTCCATGTGAGTGAGAGCAGTATGTCATACCCTCGTACTGTACAATGA
TGGAGAAACTATTATGACTTGTTTCAAACTTCTTAAATGTGTTGTTTGTGCTTTGGTATA
GCTTTGTATTTGGTGCTGTTTCGTATACATTAAAATCTTTAATGCGAAGTATTCAGTTGG
ACATGCAATCCTTTGAGCGTAGATCTAGTAAACTGTATTGAGGTGAAACAAAACAAAAAT
GTTGGGCCTTTGTTAATTTTTTGCTCTCGTTCTTTGTTGTATCGCCTAATCGAAAATGTT
AGTTAGGATCGTTTCCATGGCAGATCTTTAGGCATACTTTCTGTTTAAGTTTTACCTGGA
CCGTGATAACTTTGATGCTCAAGTTCTAAGCACATGTTTTCCTTGATTATTCACTTTTTA
TTAGCAAATAATTCTGATAGCGATTTCAATACACCTACAACGACTGAAAACCTAAATTTG
TTATTCATGCTCAGGCTGAGGTTCGCCAGCCAGATGTACATGAAGCACAAGCTGCTTATG
AGGACATATACATACATGTGTCAGCTGACTCTTATGACAAAGTTGATGCTGCAGTTGCGT
TGATTGAGATGCTTCTTACTCCTGTCTCAGTAAGTTCAGAAGCTTGGTCTTATATTTCTA
CTTGTAATATGCTTTCAATTGACCACCAAATCATTTCAACGTTGTCAGGTAAATTCAACA
GATACTTCAGAAACAGCTGTTGTTTCTTCGGCAGTTACCTCTAGTGGTGTAAACCCAGCT
GATATGCAACAGGGGCAGAGCACCACTTCTCAGCCTGGCTTATTTCAGTACCAATCACAC
AGTTCTCATTGGCTTTCCATTTCTCAAACCAGTGCTCCATCAATTCCTTCCTCAGGGCCT
ACACCGAGCCCATTACCCAACAATTCATTGCAGCTGCAACCTCCTGTTGGTTCTTTCAGC
ATGCCACCATATACAGGACAACCTCCTCACATGAATTTTATGCCAAGAAACACACCGCCT
TTTCATGGATTTCAGCCATCAATGCCAAACAATCAACAATCTTCACAGCAGTTCCAAGCC
AACCCCTCTATTGAACCATCTTTTGGTCAACCAGCTGGAAATGCTTACAACACACAACCA
TTGCCATCTTCTGCGGCCCAACTGCCTGTTAGACCCCTTCAAACACCCCATGCGTCTGGA
GGATGGCCAACTTTCTCCCCTGCTATGGCACAATCCCAGAGACCTTCACAAGGTGCACCG
AGTTTTATGCCAATGAGACCCCCTATTTCTGTCTCACCAGTTCTATCGGCACCTTCTCAG
TCAAATATGTCCACCAGCTATGGAACTCAGAATCCTCCAAGAGCAAACTTCACTCCTCCA
GCAACATTACATTCCAGGCCTCCTGGTGGCCCCCAGTCTTTTCCTTCAGTTTCATCTCAT
GGTCCCACGTTGGTGCAAGTACTATCATCTCCTGTTGGGGCGCCACCGCCGCAAACTTAC
CCACCATCGATGCAAATGCGTCCTCCCATGTCAACACCTCCTCAAATGAGAGGCACACTT
TCACCTTTCCCTCAAGCTGGACCAACACCTGGCAATGCACAAGTGGCACCTTCATCGCGC
CCACCTGCTGGTATGCACGGGTTGTCTTTCTCAAGTTCAGCAAACACAGGCTACAATCAG
ACATCAATAGCTGCTTTCAGACCTCCACGTCCAGCCACAGGTGATTTTACCTTTAGGCCT
CACGTGCCACCTTCGGCTGAACATACAGCTTCAGCGGGCCAAATGGGAGCTCAAGCTAAC
TCTCCATTTGGTTTACCCCAAGCATCGCCGTTCCGTCCTGCCAATCATGGCCCCATTTCC
CCAGTTCAAGGTTTCCAAAGGCCTCCAGATGGAAGTCATATGAGTCAGGCTCGGATGCAT
GCTCCACCTCCACACTTCCACGGAACCTTCCGTGGGAATCCACCTGCTCATGAATCACAT
AACGGGTTTCGACCATTCCCTCCAGCAAATCCATCAAACAGAATGCCGTTTCATTTCTTG
CCACCACAGCAGAATCCATTTCCTAATGCAAACGGGCAAGGTGGCAATCCAGGTGGCCCA
AATCCGATATACGATCCTTTTGCTCCCACATCAGTGTCAGGGGGGAGGAAAGAAGGCGGC
GGCTGACCCTGTCTACTGAGAATCTCATGCAGTCGGTTGGCTCGGAAGGAGGAGACGTTG
ATAACATCTCTGTCCTGGAATCAAAGTTGCAATACGAAGGGAGTTGAGCCTTGAGTGGTC
GAGGTGCTTAACTTGTACCATTGCTCTCCCCCTTTTTGTTTTGACAGAAGCACACCGTGT
CGAAGGAGACATTTCTTGCATTTGCGGCTATTTGTTTTTTTTTTTTTTTTGAAAAGGAGG
ATATACCCTGGCCTTTGCATCTCGACGATGCGGCTATTTGTACGTTCAAATCTTCCATTA
AAGAAAGAAACAGAGATGCCTGTGCTGTTTTGCTTTTCGAGCAAGCGAAACTCATACCCT
CCTGATCACTTGCGTTTGTTTACATCAATTTTTGTACTACTGCCTTGCTTCCAGTGCAGT
CCTTTTCTTGTGACAACATTGACATGTAACTGAATCTAAAAGTGTCCATACAGTAGGAAA
CAAGAGATTATGAGATGAGTTCCCCTCCCTTTTCAGCATATCCTATCCACCGTAGGCAGC
TTCAGACGACACCTGCCTTTGGGTCAGTGACATTTAGGCTCACATGTCATGCACACAAAG
GCAGGTGCCTTAACCGCAGACCCTATGCACCACCCCAAGTGGAAAACAAGCCTCTTGAGA
TTTGAAAACGTGTAGTCCCGTTTTGATCATCGTTTGTCATGACTTCTTTTTAAGTTAGTT
GATCAACTTCTCTTTTGGTAAGTTGGTTTGCTTGGAGTTGGACGTAAGTATATTTCATGT
ATGTCGTGTTTCGATTATTCGTTTCATGGTTCAAAAGCGCAGACTCTCATTTGCATCATC
TGATTTGCTTGAACGTCACATATGGTTCATGAATGGTGTTTGTGGTTCAAACATGTAGAG
TCTCGTTCCAATCATCATTTATCAGATTTTCCAAACCCAGAGTGGCACTTTAATCTTCGT
TTGTAACAACTATTTGGGAAAGTTAGTGCTTCATCTCATGGTTGGAAAGGATCAAGAGTT
CGACTAGAAGGGGGTGAAGTGGGGATGAATATGAGACTGGAATCTTTTAGTTTATAATTT
CTATTTTTTAAGGGCAAAGCGGATAAAGCAAGTTCTCTAGATATGCAATCTACGGTGAGA
ACAACTTTATGGCAAGCAAGCCAATACAAACGGTAAGCAAGTCAAAAGTTAATTAGCAAG
GCAGTAAGCAAACAAAGCAAGTAAATGAACTGAAATGGATAAACCACGAGTGAGTCAAGG
ATGCGGATGTTACTCGAAGTTCAAACTCTTGGTGTGTGGGGGGGGGGGGGGGGNNNNNGA
GAGGGGCAGAGGGAGAGGGAGAAGGAG