Map Locations of contig_1558284 (5494 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1558284

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_10033 2 1463 bp AK361122 Available Available None
MLOC_10034 1 226 bp MLOC_10034.1 Available Available None





CDS Structure of MLOC_10033






CDS Structure of MLOC_10034






Contig Sequence (5494 bp)

>contig_1558284 5494 assembly3_WGSMorex_rbca.fasta
TTTCTCCGGTTCGATTGCAGAACGGTCTTATTAGCTTAAAACCCCGATGAGGCTGCCGGT
TCCGGTTTCTTTCGGTCCGGTCCGGTTTTTTAAACTAGGACACACACACACACACACACA
CACACAATGTACCACTGGTGGTTATCACCCAATAGTGTTCTACTCTACAGGGTATGTAAA
ATGATGTGAAACAGTAGCACACAGTATATATATTACAGTCAACTGTACATGCTGCCACCA
CACCGCACCATAGCTAACGGTGGCGGCCAGTATCACACAAGAACAGAAAAGAAAACAACT
TCACACTGAAGATTTCCTTGAAGAGGGCAACTATACCAGTTGCGCTGATCATTTGTATGT
GCAGGAGCAACCCTGCAAGGAATCCACACATTCAGCCCAAGAAAGATGCAACATATGTAC
TAAAACTTCAATCTTTTTTACCCTACCAGACTAATAGAATTCAAGATGCAAAAGTTAGTT
CCGGGAACATACATAGCATCCATATCTCTGTTCAGTATTTGTGCTTCGAAGAAACCAAAT
ATTTCCAGGAGTTTGATTCCCATAGTTTAGGTCCTGTAAATGCAAACTGATGTCAAGGCC
TCTATGAAAAATACGTGCATCCAAGCCAAAACAACATAACTATCCAAATAAATGGTAGAA
GACCATGCATGTGGGCGACGAAGTCGAAGTAGTTAGCACCATTGAAAGTCACTGGAAGAC
AAGGGGTGGAAACAAAGACAGACAACTAAGACAATGTGTCTTTTTTCTTTTCTCTTTTTT
TCTTTTTTGGTTGAGAAGGTGACGCTAGGTCAAGCCATCGAGCAAAACAGCGTCCGGTCA
AGGCATAGGAGACACACACGAGAGTGCGTCGACGGACCCACAACACGGAAGTACGGATGA
CAGCTGGACCCAGATCCCTAACATACAAACTCTTTACTCCCAAGACAAGTGGAGTCCTAA
TAGAATAAATACTTTAGCATAGTTGTATGCACCAGAAAAATTCAAACAACGCACGAAAGA
GTTCAGATCTGTCCAAATAAATCACAATAATCATGAAGCAATTAACCTGTCCTCAGGCAT
TAGCAGACTTTTTTAGATCTACAGTGCAATTTACTAGGATACCAGCGATGACTAAGGGCT
TGAGCTAACCAAGATGAGATCAAGGATGGCTATGCAAGTAATAGAAGTTTAAGCTTCCAA
ACGCAGGTTGCCATTTAGTGTGCAGATAATTGTGTGGTTAAATAACTACACAGGCATATT
TGAATTGTCCAGTGCGTCGATAAAATATAATACCTGTCAGAAGTAGAAAAAATAACCTTC
ACATGTAACGTTGTTGCTGGCTCCTCCGTAACTGCAGCTCAGCTGCGAGCTCAGAGCACC
TCCTTTTTGTTTCCTCTAGTTCATGCTCCAGCTCGCCAATCTACAAAGAATCATCAGATC
TCATCAGGTGGCACCATACGATCTCTTTCCCTAACTTATCACTTCAAATGTTATTGCATA
CCGTCTGCTTCAACTGTGTATCTCGTTGCCGAAGACCTTCACGCCTGTAAAGGATGTTTT
AAGTTCAGCTTGCCAAGAACAAATTGGTAATGTGGATTTCACGCAATAACACACTGCTAA
CAAGTCCTATTAATTAAATTAAATGTTAAGCCACGTTGTAAGAACAAGGCAAGTGTTGGA
CGTGAGCACATATACATGGCCAGTGTGGTTTAGTAGCTGCGGCCACTGAATGTTCCAAGA
ACAGTATGTTTCCTCCCCGAGAGAACTTAAAATGCTGCCAGACTACCACAACAGGCTGAC
TAAGTCGCACAAAATATACAGGAACGCAAGCTCAGAGTCGACAAGCTATATGATCGTGGC
TTGATGTCTGCATTAGCGAGCCGGCTTCGATTAGATTGCAAAGGCTCGTAAGTTTCCACC
TTTTATCTTTCAACACTGCCTTTCCATCAGCCCGCAATCCATATTCAAAATACGTTTCGC
CCCAAGCCCTGATGATCTAACCTCAGGAACGAGTCTACACCCCCATCACGTCATGTCCCA
ATCCATACTAAACTGTGTATGGCCAACCATAAAGCTGAAACCCAAGCCACCTCTCATACT
GCCTGTCTATCGCCACGCCGACCACCATCCCTCACCCTAACCATTTCTAAGTCATTTTCC
TTCTCTCACCCTCAAATTGCTTCCACTTTCTTGCCTGACTGATGGGCCCTATAAGGTGCA
ACAGCAGAAGTATAGAACGTCAAAGCCAGCTCTATTGGCAGCTGTGGGCCAGTGGGCTCT
CTAGGCAGAACAGGCCACAGCAATAATAGTTCTTCAAGTCCTGGGGCATTCTTGGATTCT
CATTTCTTTGGTCTGTCCAAGAGCATGATGATAGCTTGAGTTTCTTCACTGCATATTGAT
AATAGGTTGGTCGATCAGTTCAGTGAGACGCTGCTGAAGCTGGTGATGTGCCTCTCAGTC
TCACTCATTGATTTGAAGTGCGGTCAGTGAAATTGTGAATGCTAATATCTTAAACCCTTC
ATATGTATGGTGCCATGTTACCGAGTTTTATCAGGCCGCAGGCCGAGTGCAAGCTTTGAC
AGAGTTGAGGTTTCTCGACCACGGCTTGAGTTTGCGTCAAGATGAAGCAGCGCCTATCTA
CGCGTGCTGGAGCTCGGTTTTTTGATGCTTGTATACATAGGACAGGATTTTGCTGCAATT
AACCCCATATGTGTAAAATCACCCATCATTATTTAAATTTACCTTGTGAACAGAACCAAA
TTTTCTTCACTCAACTTCTCATTCAAATTGGGATCAAGTACACCTTGAGAGCCAATATCT
ACCAGATCCTGAATGCCACACAAGATAGAAAAAAGATCATATGAGTGCATTTCAAATCAA
CTTGGAGGGGTGTTATTATCAATTACAAAGCGTGATAGCACAACCTAATTAGCTAAAAGT
ATATTTCCATCATGCGGCCATACATATGCTTGCCTAGTGCGAAAAAATATCCAAATGACT
GTGTGCTCCATTAGGCTTTTACACTACAGTAGTGAAAACAAAGAAAGGACGAAGCAAATG
GGAATTTTACGGAACATGTTTACAATGGCTATTACAAAAGACCAACAACATCGCTGAAGA
TTGTGGAATCACAAACAAATCATGCTCTTCCACAAGAGATATGACAGGGGCCATGAAACG
ATTGTCCAAAGAAGTACCTATGTCCAAAGAAAAAAACACCTACAAGAACAACATGCCTCA
GTTCAAAGCCTAAGGGTGCAAACCTCTTCCAAGCCTGCGGAGTCCATACTATCTTCTTGT
GCTTGGCCAGACGAATGCAAAGCAGAACCTGGTCAAATAAAAATGATAAAAACATGAATG
GACTATACAGCAATAAAATCAACAACCAAATTTGGATTGTCGTACAACAGAAAAAAAAAA
CACAGAAAAGTTATCATACTCTGTTTGGAAAAAAAACTTATTTATGAATAGCAGGCATCA
TGTACTTGTTTATGAATAAACTATACAAATAACATTGAGATAATATTTTGATAAATAAGA
GAAAACGTATCTCAGATAACAAGATATTCCTAGTTTATGACCCTCTGGAATAGAGGACTG
TTTACCTGATAATTAGAGTATTAAGACCGTTAACTAAATCAGCAATCTATAGTGAACAGG
ATTGCCATGTCAAGTGCAGGTACAAGAAAACATTAAATATAACACAACTGACAGGATCTA
GGGATAACATAGCTACACTGAACTTGACATCAGAGATAAGAGACCAAACATAACCCTGAA
GCCTGAACTATTATACTTACTCTGAAAGAGAGCTTCAGGAGGGCTATAGAAGCGTGACTG
CAGCAAAGAGCTGAGTGAGGAGATAGAAAGAGAAGAAAGAAATAAAGCCCCTTAGGTGGG
TAGCACTTGCTATAAAGTTTGTGGGGCTAGCTGCCCCTCACTCCTCTTCTCTTATGTACA
AATATTTTACTATCGGGGTCTCCCCCTTCAATTTTCTTTATTAATAAATTTCTTTTCCTT
TTACTAACAAATTTTACTATCGGGGTCTCCCCCTTCAATTTTCCAATAAAAAATAAAATA
ACTTTGACAGTACTATAGTTATTTCTACATACAACTACTACTATTACCTGCCCTGTTAGC
TGTCAGTCTAAGAGCTGCTACATCATCATATGTCTGTGGGAGCAAATTTGAGAGGTGCCC
TCCAGTCTTCTGAGAGGTGGAAGCTTCATGCCGGATCTTTGCTCCAGGACCACCTGAATC
TTTAAGAGCAGCCTTATACTGTGATCTCAGTTTCGGATCGATTGGCTGGTAACCTATTAG
ATGACACTTTTCCTTCCTGCAAATACACCATTTGTCTTAAAATATGGGGAAAGCAATGAG
AACAATCGGGTGCATGATGGATGTCCCAAGTCAAATAATGTTCTTAAAATTGTTGCAAAA
CTAAGTAACATTACTAAGGTGGCCTCACACGAGTAAATTGTTGTCAAACATCTAAGATAA
CAGGTCTGCTACATTTTACCAGGTTCAGCCGATTACCATGTAATATACCAATGATTCTTC
AAACCATGCAGCAGGACTGCATGTGATCTATTAATAGGAGGAAAAAACTCAACAACACAC
AAGTTCAGAAGCAAAAACAAACAGGTAAGACACAACCTCAACCTCTATCAATAGAAACAC
TAAGAGATATCACTATGCAACGACCAGCCCGACTACTACAGAGAGAAGTGATCTTTTTAC
AAGGACTAAGGAAGCTAGGCTTTTACTTCTTTTTTTTACCACTTGGAATAAATCAATCAC
AAATTCTTCAACAACATGAACCTAGTGCAAGTATGCATAGTGTAGTATATACTTCATAGG
CACAATGTTATTTTCCTTTACATTGAGCATTTGATGTGCAAAAACAAAAAAGAGGCACCT
GAAGCAAACCCCAAATGCGCTTACCAATAATCAACGATAATTTGTTTCAGTTTTGCTTCC
AGTCTAATGAACAGTGGAGTCCTCTCAAAATCTTGCTTGTCATGTGCCGGCTCAATAAAA
TTTGCCTCAAGTACACCTACATCAAGACAAGTGTCATCCAAACAGAAACATATTAACCAA
AGTGACAGTACTAAGATATGAAACTCACCTATAACACTCCTCCCTCTACTAGATGCTTCT
TGAAGGACCTTCCAGAATGGCTGCAAAGGGTTTTTTTTTCTACAGAACTCAATTCCAGCC
CAGATTGTATTGCGATAATTTTATCACTAGAACTGTATATTTAGATGGCCAGATCCAACT
CTGAACATGATAATATGCATTTAGGCCTCTCCTTGTATTCATGAATGAACACAAATCATG
AAATTATAACATCCAGAAAGTATTTTTTGAGCGGAAAACATTCGAAAATTGATAACTTCT
ACAGGCAGCTTGATACTCCTTACATACCAGGTCTAAATATAATAATGGAGATGGTAGAGG
CTAGGGTTCTACCAGGTCTCGGACGTTGTAGGGG