morexGenes - Barley RNA-seq Database

Contig contig_1558204
Source Contig contig_1558204
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1558204 (9028 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1558204

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_9993	2	1281 bp	None	Available	Available	None
MLOC_9992	1	467 bp	MLOC_9992.1	Available	Available	LOC_Os02g06650.1, FRAME:-1, EVALUE:3e-35, 13102.m00741 protein COX VIIa, putative, expressed
CDS Structure of MLOC_9993

CDS Structure of MLOC_9992

Contig Sequence (9028 bp)

>contig_1558204 9028 assembly3_WGSMorex_rbca.fasta
CAACTTTTGTAAACTGGCGGCAACGGTATGTCGATGCAATGCGGATGATGCGCATGATGC
AATGATGATGTGACAAATAAAATAAACACACGACAACCACATACTAAATGTGGAATCTTC
TCGGGCGTCGGTCTCGGGCTGTCACAACTCTCGTGCACTACAAGAGGATCTCGACCCTAG
ATCCAAGAATGAAAGGGGAAGAGNNNNNNNNNNNNNGAGGTAAAACTTAGTTGCTTCTTG
ACGAACGAGTGAAACCAACAATCCTTAAAGGTTGCAAAGAGATGAAGAATGATATGAGAA
ACAAGAAAGAATTCAGAGAAAATTTCGACAACACTTCAGGGAATCTTCTCGGGCGTCGGT
CTCGGGCTGTCACAAGTAGTTCATGCGACTCTCTTGTAGTATTTGTTTAAAAAAGAGCAG
AAAAAATCTTATATATTGATATATTGGGAGTAGTATTCGCAAATGATCGGTGGAGGCCGG
GCTTCATGAAGCTCGTTTTTTTTAAAACACATTTTTATAACGCAATTTTTTCAAAATTTG
TATATACACAAATACATATTTAACATGTCCAAGAAAAGTCTCAGGACAATTTACTTTCAT
ACGTGTTGTACACAAAAGAACAAATTCGTAAATGAAAATGGGCCAAAAAAATTGGTGTTG
GGCCTAGATTTTTTAATTACTACGTGCAAATTATTATATTTTTAAACAAAAAATTTCAGA
TCCGTCAAGAATGTGTATATGTTTTCACAGGATTTCCTTACAAATTTCTTTGGAACTCAT
AAAAATCATCTTCAAAGATTTTGAAAAAAATGGCTTCATGGAGCCCGGCCACCAAAAATT
CGCACTCGAGTAGTATTATGCTATTACGCGTGATGACCCCATGTGTCCACCGGCTCATGC
AAGACTAAACCGGGCAGTCCGCACCAGCAGGCGCTGCGACTGTGACTCGGCCCTAGCGCA
CCCACTTGTGACGACCGCACATCAATGGGTAGGCTTGGGTGCAATTCATGGGAGCTCCTA
GTCGGGGCCTTAAGCACCGGCTAAGAGAACCAGCGCCCACCTTTCCTGCAAAATGGGCCG
ATCCAGTTTCAGGGCTGATTTTTTTGTAAGAAAGGGGAAAATCCAAAAAAAATGAACACA
AAAAGTTTATAAAGCGAAAAATGGCTCACAAATTTTGAAAGAAAAGTTCATGAATTTGAA
AAAATGGACTATGATCTAAAACAAAGTTCACAAAGTTTTAAAAAGTTCACAGATTCTGAA
AATTAATTTATGAATTATAAAACGTTTTAAAAAAGTTCGTTGAACTGGAAAAAAAGTTCA
CAAATCTTTAAAAGTCCCTCATTTTGAAAAATGTTCATCCATTTCAAAAAAGAAGCTCAT
CAAATTTCAGAAACATTCATCAATATTCAAAAAAGTTCAAAGAATTTTAATAAAAATCGT
AAAATTTTGAAAAGGGTTCGTTGATTTGGAAAAAAGTTTGTTCGTTTGAAAAAAAGTTAA
CCAAAAAAAGGCTGCGCTTTTTCAAAAATATTATATAGAAAATAACATGAAAATGAAAAA
GTAATAAAAAGAGTAAAGAGAAAAAAACAGTCCTGAAAAACCTGAATTAAAAACCCATTT
AGAAAGCTTTCGGAAACTTCACAAAACCAGAAAAACCTCTCTTTCATAGGGCCGGCCCAT
GACTGAATGCTGCAGGCCCGGTTAAGAAAAATGCACTTTAACTTTAACCGGCACCTGCAG
CGCCAAATAGGATTTGCTGCAATTCATCCGCAGGGCAGCGCGCGATAAGTAAGAAACAGT
GTATAATCCTTTCATGTACTATTAGCTTGTGCATTTTGCACTCTTTATTTTCGGGGCTTC
AGCCTGAAATGTGCATGAACTGGCTTGCATACAGATCAAACGTAAAATACGGCATGATCC
CTAAAAGGCACACGTATACCAAGAACGCATATTCGATATTTGAACATTTTTGCTGTCAGA
TCAGGTTCGCTCACATCAGGTGCCCACAAAAACAAACAAAAGGAGAACTAGAAAGGCATC
CACTGATGGAACTTTGATAGCATTATTTGTGCAACTAAAAAAGACGTCACGGGCTCATAA
CTTTCGAACAGCAAAATCCTTTCAAAGAACCACTATCATGTCAAAGTACTGAGCCAACAG
CAAAGCCACTCAAGGTCACTGCTTTTTCCCGATACCGTGAGACATGTTGTAGACACCACG
ACCCTGTTTGCACAACAAGATACATGTCACTGGCTAAACGGAAACAAGAATAGGTAGAAA
AAAAATTACAATCATGAACAGACAAAAATCCAAACTCACAATCAAGAATAGGCTCGAGGC
AGCGAGCGCAAGGGGGATGCCGACTGAGATGATCGCGTCGTGACGCCCTTTCAGGTGAGT
GTGCTTGCTCAAGCTCTGGAAATACTGCTGCTGTTTAAAAAGCCTCTCACGTGGCAGAAA
CGGTGATTCTGTCATCTGCATTAGTGCATCACCAGAAAAGAAACTAAGACAGCATGTTGC
AAGGTGGAAAAAAAGAGAGTGACAAATCTTGGGAGGGAACTGAGCAGTGTAAAAGATACA
TAATCTTTTTCTTTTGCAAGGAGGATGCTATAATATGAAGGGCGCTGGGCTGTAAGGTGT
AAGCATAAGAAATGTAATCGGGAATCAGCACTGTTGGGATCATTGATATGAATCACTCTA
CTGACTTAATTTGAAGTTTCAAAAAACCTTCTAGTAGTTCCTAATAATCGCTCTACTCGA
TACATAATAGGAACCAGACAGTACCCTAGTCCCCTCAACCCTCCCTCCTCTAAACTAGCA
CACCCCAACATTTCTTGAAATGTTGCTAATCTTGTTCAAATGTCCACTTTTGACACGTAA
GCGCATCATCTCCAGGTGGATCAAATTTGAGAATTTGTATGGCATCAACAGCGTGCACTT
GAATGAAGACAGGAGCAGAAAAACATGCAAACTAGATAAACTATAAGTTTTTGTCAAAAA
AACCACATGCACAATCGAATTGGCATAAAATATCCCCTGGGCCGTGGCGGCAGGCGTTCC
AGACGACACGTGGCACCTGCCGCCACGGCCAAAAGGTGGCAGCACTGTTTATCCGGGTGC
GGCGGCATCAATGCTCATCCAAAATGAACCGTATTAAAAAAAATCAAAAAATAGCAAAAA
AACACAAAAAATTCTGAAATTTTGCACCCATCTAGAACACTCGATCATCTGTGCTACCAA
AAAAATTCAGTTTTTTTGAATTTTTTTGCTATTTTTTTATGTTTCTCAAAAACATTGTTC
AGTCGTAGTGAATCATTCCTCACGTGAACAGTGTTGCCGACTCCGGCAGTTGCGGCAGGT
GCCACATGTCGGCTGACGCACCTGTCGTTACGATTCGGGAGTCTTTTCTGTCAATTTCAA
TCGAAATTGATCCTTTTTAGCAATTCTGTTGATCATGTCGTCTTTTTGACGAAAAATCGA
TAAACTACCACACCTAAGGTAATTTAGAAGAAGCTAGGAACAGCTTGTGGACCGTAATGG
CATCATAATCGACAATTATATGGCTGATCATGGCTAGAACCCATACTCATATCACCATAT
CAGAAATAAAAGGAGTCTTAACTCTTAAGCAGGCAATGAAACAAGGAGCTCGCTTCGTAG
CGGTCCCGCACGGTTGCCTTCCCATGTGGCGGCTGGCTGGCCACGGCGCAAATCGCGTTT
AAGTGCATGTTTCAGGATTAAAAAAGTATACAAGAACGGCTTTTAGGTCCAAGAATGTAG
TAACATCAAAAAATTATACTGTCGAAAAAGAGCATTTTGGCAGCGCATGCATGCAAAACA
TTTTCCAGTCCTAGTCAACATCTTATGCATATTTATTGTCAATCTTAAAAATGTTTTATC
TCAGAAATTAATAATTTTATTGGAGATTCATCTTCACCGTTAGGTTCGTCTCGACAAAAC
TTTCAAAATAAGATCTCGTGTTGACATGTTTCGTTGATTTTTTTTGTCGTTCCTAATTAC
CACATTTATGTCATCATATTTGTCATCTTACAAATGTACAGTTGTCACAAAAATTATACA
TAGTTATCGTGATAATAATTTTATACTTTTTAAGTATTACAATGTTCTGTGAAGCTAAAA
AGTGTGTATTAAAGCATTAATAATAAACAAGCAAATGCTTGAACCAGCATAAGTATAATG
AATCAAGTTTTTTACTCATTCATGAAGGTGATAACCAAGTTGATTTAATGTGAGAACTAT
ATAACAAATAATATGACAAGTAAGTCATAGTAATCTGACAAGTACCGATGAAAATAAAAA
TTATCAAAACATGTTAACATGGGATCTAGTTTTGAAGATCTCGTCGCGATAAAGTCAGTG
ATGAAAATGGATCATTAATTAAGATACCGGTTTGGAAGATAAATCATTTTTAAAATGCAA
CTAGCTACTATAACTCAGCAGCGTGTAAGTGCAAAAAATAGATTCCCTCTTATACTCCTA
TTAAACTAACCAGTACTACATTATGTTAATCGGTAAATCATCTCCGTCTTTTTAAGATCT
GACACATGTGTGCGTAGGAAGCCCATTAGATTTTCCCATGAATCAATCATATATTCAAAA
AATAAAAATGCCACACATATATTGAAAGCCGAACGCTTCTGTGACTCCTCCGCACAATGA
CATTAATTGTAATACCCCGCATCCACCATTTGGTCTCTCGGCGTGTGTCGTCATGTAACC
TTGCCATTCCAATTCAGCATGCGTCGTCCCGTTCTAATTATCTCCAAGGTGTTGAGATCG
CAGCACGGATGCATGGCACCAGAATCCGACGCGTGTCCAGGCGGCCAGAATCATGCATGG
ACGAACTGCACCACACGCGCGCCCAGCGGCTAAGCTCCGACAGGCCGGCGCCAGGGATCG
TCGAACCAACGTCGACTAGATCCTAGACGCACGCGGCGATCCACATATCACGCGAGAGGC
CGCACATCGTCAAACATGCGATCGAGAGCGTGGCGAGGCGGGACAGGCGGCGGGGAAGGA
GAGCGCGCACCTTGGCGACGACGAGGAGGACGACGACGATCTTGCGATGGTTCGGGGAGT
GGAGTGGCGGAGAGGAATTGTGGGGAATGAGAGAGACGTGAGAAGAGGACAAGAGCAGCA
GCACCGCTTATATGGGCCTAAAGAGTGGTACGTGTGAGATGCGACCCATTCAACGGGCGG
AGTGCGCCCATTAGCTTGCTCCTCCTCCGGCAGCTCTTATTCATGGGCCAGCCCAGGTAG
CGGCCACTCAAGAAAAAAAAAACAGCTGGTGGCTCGGGTATCCGTAAAGAAAAATCTCTT
GGCTCAGATTTTTTTTAAAGATCCATATATATGTTGTTGCAAAACCATATTTATTTACAT
TTTAAAAATATTCATTTTTTTAAAAATTCCATGGATTATAAAAAATTGTTCAGAAATTAT
GAAAAAGCTAAAGAGGAAAACAACCAGAAAAATTAATATTAAAAAAAGGCATATAAAATA
GAAACCTAACAAGAAAATTGGTATAAAAATAGAAAAGAGAGACACCGGAGGAGAATCGCT
GAAAACCAATTATTGCTCAACGCCGGAGTTGGGTCGACCCATCACACTCGCTTTATATTA
TTTCCTCCATCCGAAATTATTTATCATATAAACATATATAAATGAATATATCTACAACTA
AAATACATCTAGATATATTTATTTCTGTAACATGACGAGTATTTTTGGACCAAGGGAGTA
TTTAGCACTTGTACATTGCAACTAGAAATCCATGCTTCCTCATGGCTTGCGAGTTGTATT
GGAAGGGGCATGCAGAGTTTGAATAGCTTCAATAATCTATACTAGCATTTTCAGGCCCAT
GGGGAACCTTTCTTTCGTGTTCCTCTAGAAGAGGGGAATTTAATTATTTACTTCAATCAG
TTTTTCATATTTATGTGCACATTTATCCCTAACCTTGCCTCGTATATGCATGGGACACAA
AGAGAGTCCTGATATTGACGTGTTGCCAAAATGCCATTATGCCAACAGCCTCCAGACCCC
CTCCCCCACATTGTCGTCGACAAGGCAGTTCAAAAAAAAAAAAAATCACCATCGATAGAG
GGAATGCCAACAAAGTCTATACATGCCGTGGAAAGATGGTGGTGGGGCGTTTTATTTTCC
TTGGACATCAGAGTTAAAGTGTCATGTCATGACTCTTGTGGCATCCTCCTTGTGCTCCCG
CGAATAAAGGTTTTCTTGGCTCTGATGAGGGAGGGCGATCACGGCAGCATGCCTTCAACT
TGATCCAATGTTTGCAGTCGCCGTTAGATAGTCTAGAGACCTGGATGTGATTTTTCTTAC
TTTTAATGTTCTTTGTACTGTCTTGACAATTGATGAACAAATCAAAAGTTTTTAATGCGG
AAAAAATATCGGAGGGTGGCGTGGCTTCAAATCCACCTGGAAGGAAGCAATTTAGGTGGA
GTTTTAGAGTTCAGGGATGGAAGAGGCATTTTTTCCGTGTTTTTTTAAACAGGGCAGATA
ACGAGGGGCGAATGAGATGGGTTGACCCAAAGTGTGGTTCGGCGAGGTGGCCTCATAGAA
CACAAATCACGACAGTCTTTGTCATTTTTATATTTCAAAAACAGGTCCTTTGCCATATGA
AAAAGGAAGCATCACATGGCTTCCATCGTAATCTTATCGTGATCGGCGAGCCGTCAACTT
TACCCTTCTCGTGAGATTCGTACCAAACCGGTCCGTAAAAAAAGAAAGTTTCGTATCAAA
TTTCCTATCCAAAACGCGATTCTGAACCTCTGAAAGAAGATCTCCAACACCTCAGCCCCC
CCAACCTCCATGGGGATCTTTGTTTTTGACTCGACAGAAGAGCTCCAAGACCGCAACAGC
TCCTCGCCGATCACATGACGATCATGCCACGATCTCAACAGCTCCCAGACCGCCAACGGT
GCCAATCCGGGTAGGTGCGAGGCATGACCGGATCCTGTCCGATCTGGGCCAACCAGTGCA
CATAGACATATGTTTCTGCGCCGATCTCACGATCCAACAGGCAACAGCTTATCCACACGA
CATGTCTGCAACACTCCCGAAATATGTTTGTTATTAGACAAGAAAAGGAAGTGTTTAGCT
GTGCCCATTTCTCTGCCAAAAGAAACAGTTAATTTGCTTAGCTTGTATCGATGAGTTCGT
AGCGCATTACAGTATTTTTATATGCGCCATAATTGAGGGTCTTTGTGCTGCAGGAACTCG
GAAAAATACGGCGGTTCTGCGTCACTAGGCGTATCGGAGGAGACGGGGCCAATTCAGAAT
GACAGGTGGTGGTGGACACCTGGTATTTCTAGTTTCTTTTTTTTCTTTTTGGTAACGGGA
CACCTGGTATTTCTCCATTGATGAAATGGCTGCTGACCTTGTGTGGAGTTAAGAAAATGG
AGAGTTCTGGAATATTGTAAATGGACATTGACATCAGGTTCTGGTTTCTGTTGCTGAAAT
GTTGTAAACGGAGTTAAGAAAATGGAGAGTTCTCAAATATTGTACTGTAAATGGTAGTAG
TAGTGATGTCTCTTTCTGGCTGAGCCTGCAAATGATGGTATTATCTGTTTGGAGAACTGG
TAAGACAAGCAAGCCATGGAGATTGGTTTCTGATGCTGCACTTGCTGCATGGTAGGAAAA
TTTCAAGGCACAAGCACACAAGCAAAGGAAGATAATATAAGTTTTATGTCACAAAAGTAA
GCTACTAGGAACAAATATATGTAAATAAAATAGATCTTCAAACACATATCTTTGCATTGA
TGGAATGAGACACATCACCATTCCTCAAAGAAATAGGTCAGATGTATGCTTCGCAGGAAA
GGAGGTCACTTCATAGATGAAGGTCTATTATCTTCTTTCTCTTCTTCTTCGCAAGATCAA
ATACCAAGTACAAAACTAGCTGTGGGTGGCATTTCAGCTGGTCCTAAGTTGCTGTTGTGC
TCTTAACTGCACACCTCAATGCTACCTAATACCAGCAAGACTACATAATATCCTTTCAAG
TCACTAGGATTAAGGACCATGAGCCACATGCCTGATCTTAAGCTGACAGACATGGGCAAC
CATTAATTGGACCTGAAGCTTTCAAGGAATTTAACAGTGGGCAGTCCAAGTTGTATGCAT
AGTAAACAGCCAGCCTTTTTCCAGAGCAAGCTCCGCAAAACATTCAGTTTACTAATAAGA
AACTAATGCAGGAAAATAAAATTCAACTTCTTGTTAAGAATATTCTGATACTAACAGTTC
GAGTTCCCTATTTTTTTATGGTGGAACATAAAAAGTACAAGGAAATGATTGGCAGAGGAA
CACAATCCAAGTACAGCTAAAACAGCAACAAGTTGGTGTTTATCAGCAGGCATGAATTGG
CCCCTAGAGAATAAAAAAGGAAAAAAAAGTCGACGACGACGAAGAAGAAGAGGTGCAGCC
AACTAACTTGCCACCATATTTAAGAAGTTGTCATGCTACCCTCTCAGAAGATTTAGCTCC
CTCTTCCTCTCTCCTCCCTCCAAACCAAACTCTTGTTCTTCATCACCATCATCAGGCCCT
AGCTTGCTTTCTTGATTCCTGTACAGACTGAAACTGGTTCCGAAGATTCAGAAATAAAGT
CGGGTTTACGAAGTTTTTGGGCAACTTGAAAGTACTTTCTCTTGAGGTAAGCTGCCTTCT
GTCCTTCTATACATGTCGTGCCGATATGTATATGATTCTGAGCCTCTGAGAATCTTTTGT
TTAGCATGTCATGAGAGCTGAATTTCCCGAGAAGGCGAAAACTGCTAATCCTAGCATGCA
TTTGTTCTGAAGCATATGTGATCTTATAGGACACTTCCATTCTTGTAGGAACTTTTCTTT
GTGTAGGCCCTCACAAATGGCGGTAAAGATGAAGGGAATCTTCAAAGGGCTGAGGATATT
CTCGCACATGTTTGGTAATTATCCCATCTTTCTTTGTTGCTCTTCTATTTCAAGCACAAC
TTCAAATGCAGTTATGTTTAATTTCTTT