| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_1558064
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_9921 |
3 |
1622 bp |
None |
Available |
Available |
LOC_Os04g28580.1, FRAME:+1, EVALUE:2e-37, 13104.m02709 protein transposon protein, putative, unclassified, expressed |
CDS Structure of MLOC_9921
Contig Sequence (4378 bp)
>contig_1558064 4378 assembly3_WGSMorex_rbca.fasta
AGATTTTACTATAGACTACATACGGAACAAAATGAGTGAATCTATACTTCAAAATATGTC
TATATACATCCGTATNNNNTCCATAGTGCAATCTCTACAAGGTCTTATATTTAGGAACGG
AGGGAGTAGTAAATAAGCGATATGTTTTGCATTTATACACTAGCAGCCGAAACAAATTCA
TAGTCATGTATATTGTGCATTTGGGGAATATATATATACAGTTTTTTCATTCTCAACTAA
CCATTTTCTGAAAGTTGGAGTTTTTGCGTTTTTCCTCATCCCCAAAATAATAGAACAACA
TATTGTGTGTAGCTTGATAATCGAGAGTAATTCATCGAATCATTAAAAAATGTCTGAATG
TACATCTTTGGACCAGGACGTTGCTGTGAGGTTCAGAATTTTTTTAGGATGGCGATTATA
CGATGGATCTCTCCTTTGATATTTTTTGCAGTTTTATTTTGCGCAAGGATGACAAGTACC
CAGAGGTCAGAGAGCGCAAACCATATGTTGAAGAATTTTGTACCTGCTGGATCATCAATG
CACATGTTCGTAAAGCATTATCAAAAACTTCAGTTTGACCGTGATTCCGAAGAGAATTTT
TCTGAAAAGAAGAGCCGTTTGGTAAGCTAAAAATATCTAGCGCGATTTTCGTATTGAGAT
ATTGTATTAGGTATGGAATAATAACAAACATAACAAACATTAATATTTTCATAAAACAGG
GCAGCACAGTACTGAAAATAGGGTTGCCTATGGAGAGACATGCCGGGAAGGTTTACACAC
CGGCATTGTTCAAATTATTCCAAGAAGCATGCTTTAAATCTGCTTCGTTCTACGTCGAGA
ACAATATTGTCATCAACGATACATACCGGGTGTCACACCTTTATGCAGAGCGTAGAGAAA
GTTGGTCCAAGACTTCTTACAACGCCAAAATGAGTCAACCTGGCAATATGTTCCAATGCG
AGTGTGGCATATACGAGCATATGGGTTTGCTCTGCTCTCATGCACTGCGGCTAATAAACA
TTCTCCAAGTATAATCCGTAATGCTATTTGTACAGTAAAATATGTGTTCTGCCTTCCGAT
TATGTTATAAAACTCGTTATGTTGAAAATGCTCCGCTTGTTGCAAAGTTGCTCACTTGAT
TTTTTTTAACTTGTGTACTAACTTACTCAGGTAATGGCACACCTGAACTTCACGAAGATA
TCAGAAGCACACATCATGACCAGGTGGACAAAAAATGCATGTGAAGATCTTCCTGAGCAT
TTGAAAATTTACAAGGCCCGCACCCCTATCCTTGATTCTACTACATTCAGACATACGACA
CTGTACACGACAGCTCTTGATATTGTGAAGATGGGTGACAGTAACCTGGAGGCATTCTCA
TTTGCAATGTCAAGATTATCTGTCACAAGGGATGGCCTAAAAGAAATCGCGAAGGAGCAA
GACGGCAAAGGAATTCAGGATGTTTTAGACAAAGAAAACATGGACGTCCAACAGAGTTTC
AACAGTGACATTAAGATCATCTATGATAGTAGAACGCCGCAAGAGAGAATGGGGCCGACC
AACCAATGCAAGATCGAAACCAGGATATGAAGTTAGTAACCAAGAACAAAGTTCTGCAAA
GCTTGCCGCCGAAAGTGACACAACTCAGCTAAATGCCCAACAAAAGATGGACCAAACAAG
AAGCAAAGAAAGGATCCCAGGTGTGGTAAGTGTGGCTTGCTTGGTCACATTAGGATGCAA
TGCAGTCGTGGATTTGAATCGTGGTTTAGATGACTGTGTAAGACAATTATGAGACATCAA
CTCAATGTCTAAAACAATTATGAGACAATGCAGCGTTCACCCATTTTGGTGTAAGATTGT
GATTATATTATATATGCGTGTGAATCATAAATTTATTCCACTTGCCATAAAATCATTTAT
CCCTTTATGACGGGAATTATAATCAATGGCCGTCCATGTACGTTTTGCCCTTGACGGATT
GGCCCAGAAGAACCTGACCGGCAGCTTTAGAAAATAATTAACTTTGATCAAGCAAGATGC
ACAATTAAGACAGAGATCTACGTACGACCTATCAAATAAAATCCAGCCCAATAAAAGGTT
TTTGTGCGCCCATGCTGCACGCTTGAGATACGAAGTCGGGAAATTTTTACCGACATACAT
AAGTTCTTTAAAACTTATCTCAAGCTTGGGACATAATTAAATGCACACATGTTTGACTTA
TAAAGACTACAACTATTGTAATGGAATACATTATTTCATTTCGCTACAAAGATTGGTTTG
GAAAGAACTGCACCATCTACCCCAACCTTATGACACAAAGGACTTAAGGTATGTTCACAC
CTTTATGCAGAGCGTAGAGAAAGTTATGTCCATACACGTTGTGCACTCGGATGGTCAATC
CCGAAGAATCGTGTCGTCATGCTAAAAAGTTGAATAGAGTTGCTCAATCACATGGCGCTC
TTTGTGACAAGGGAACGAAGGACTGGTCAAATTTATAACCGTTATCATGGAAAACTTTAT
CAATGCATGCCGCAAGCTTCAACTTCTGATACGGGAGAACCTTATGGCTGCACACATGGT
ACTAAGGGCTTTGCGAAAACGTGCGACGCACATATCGTACTTGGCACGAGGGACTTTATC
AGATGTGTCCGCTTATACGATGTGATTTCGTGTCCATTCACGAAGAGCACCTTTACCATC
ATGATAGGAAGTGAATGGGATTCCCCGGCCATACGCGCACCTTGCGATAAGACATGACGC
ACTTAAGGTGCATGATATAAAGGATTTTTCCATGCGTGTTCACGTTCTACGATAGCGTCA
CCTAAAAAACAAGTTGTCATGTAAGCAATGACTTTATAAAAGAAAAGTGATCATGTATGC
ATGATGCACCTCATCGTAACCTATGCCAGGTGATGAAAACTTTGTTCATGCACGTAGAGC
ACCTGACAGATATAAGTTTTTTACCATCATACATGACTTATCAGAGGGCTCGTAATATAC
GATTGGATTTGTTTCCATTAACGCAGCACACTGTTCCATTGGTTTCCCGCACGGAAAACT
TTATCAATGCATGCCGCACACTTAAACGACCGATATGGAAGGACCTTATATGTGCTCACA
ATAGACTAAGGACTATGCGCAAATGTCCGACGCACTCAACATATGCGGCACGAAGGACTT
CATCAAAGGCATCCTCTCGTATGATGTTATTTTCGCGTACATATCAAGCATAGGGATTTC
GCGAACAAGTTTTCGCGTCCATTCATGCATAGCACCTCTTACATATCATGCATAGCACCA
CGGGTAACTTTATCGTCGTACATAGCAAGAATAAGGATTTCGCGAACAGATGTGGCGCAC
TTAAGGTACATGACACAAAGCACTGGTCAATTGTTATTCATGTTATACGATGGGGTCACC
TAGAAAACAAGTTCTCACGTAAGCAACGATTCCATGCATGCCACACACTTCAGCGAACGA
GCGCGAAGAAACCTTATCGACATACATAACAAGACAAAGCACTTTTATCAAGGCTCTATT
CTACATGACAAGTCCTTGGGTCATGTACCTTAAGTGCGACACATCTTTTCGCAAAGTGCG
CCATATGATTCAAACAATCTCGTTCACTTTCTATCGTGATGGTAAAGGTGCTCCGCGTGA
ATGGACAAGAAATCACATCATACAAGAGTAAACCCTTGATAAAAGTGCTTTGTCTTGATA
TAATAAAAGTCCTTTGGAATAATAAAGTACTTTGCGCAAACGTGTGACGCACTTACCGTA
CTTGGAACGTAGGAATTTATAAATGGTCTCCTTTTATATGATGTGATTTCTTGTCCATTC
ACGCAGATCACCTTTACCATCATGCCAGAAATTTGAATGGGGTTGCCCAATCATACGGCG
CACTTTGCGATAAGACATGTCGCACCTGATGTGATAGCAAGTTGAATGGAGATGCCCAAT
CATGGCAAGACGAATAAAGGTTATCACCATACATAACAAGTGAAAGGACTTTGCGATCAA
TACGTGGCGCACTTACGGTACATGACACATCGGACTTTGCCAATCGTGTGATGTGATAAA
AAGCTGAATGGAGATGCCCAATCATAGTAAGACGAAGAAACCTTATCGCCATACATATCA
AGATAAAATACGTTGCGATAAATACGGGGCGCACTTATGGTACACGTCACAAAGGACTTC
ATAACCATTACCACGGGAAAACTTTATCGTCGTACGTAGCAAGAATAAGGACTTTGCGAA
CAGCTATGGCGCACTTAAGGTACACAACACAAAGGACTGGTCAATTGTTATTCCTATTCT
ACGATGGCGTCACCTAGAAAACAAGTTCTCACGTAAGCAACGATTCCATGCATGCCAC
