morexGenes - Barley RNA-seq Database

Contig contig_1558025
Source Contig contig_1558025
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1558025 (8036 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1558025

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_9891	3	3500 bp	MLOC_9891.3	Available	Available	LOC_Os09g19930.1, FRAME:-1, EVALUE:0.0, 13109.m01879 protein HOTHEAD precursor, putative, expressed
CDS Structure of MLOC_9891

Contig Sequence (8036 bp)

>contig_1558025 8036 assembly3_WGSMorex_rbca.fasta
GGGAGTGGTATATCACCTCTCGAGTACTTGTCCAAGAAAGTAACAAATTACGCCTGAACA
CGTGAACGCATCAAATCTCAATATTTATATCGAACACAGTTCATAATTATTGGTTCCAGG
AATGGAGTCTTGGAAACTCGATCACAATCTTTTCTTCTTGACATGGAACTATGGGAAGCT
TACAGTCTTACTTGATCAAATTGCATGTGCCTCATCTTCCATTATTTCGATTATATTGCT
ATTGTTAAACTGGACTGAATGGTATCTTCAGGGATGATGCATTTAATGGACCATGAGAAA
GTGAACGATGATCTTGCCAGGCTGATGGAAACAGAGGGGCTTGACGTCCAGCTTAGCTAT
GATGGTCTCAGTATACCTGTAAGGCTCTAGAACAATTGGGCACACGCGATATGTTAATCT
TTTGGGCACTGTTGAACGGCAGTTGCAGATTTTCTGTAGTTTCATTTCAGTAAAATGATC
ACAACATGTAATCCGTCAAACTCCTCACGTCAAGCTTTCCTTTTACTTATCTTTCTTCCC
CCACCCCTCCTCCTCAACAGAGGAATCATATGTACTAGCAAATTTAGTCCTTACATCGCT
GATGAAATTAAGTTTCAGCAGTGGTTTGTTTAATACTTTCTGAGTTGATACTTTCTATTT
TTATGGTATACTGTGTTTGTACCACTATTAATAGATTTAAATAGTTCTTGAAGATGTTTT
ATCAAACCATCCACATGAGATTAGGGCACATATACCCATGAAGTTCATCAGGGCTTGTGT
CTTGAGTACTTATAAGAAGAAAGATGAGTTGATAAACAATTTAATGGCCAATATTGCACG
AGACAAATAGTTACTGGGTACAGATGAAACTCCTAGACTGTCTTACATTGGTGATTCACA
CTGGATCCCAGCAAAAATTAGTGATTTCTTTTCTAGGTCACACACACATCATAAAAGGCA
GGTGTTCAGGAATCTACTACACTCCAGCTGCTGGTCCTAGCCGTTCCCTTAAGATCTTCA
CTCCAAAGTACCTGAGCATAAAGTATGATTAGAAGCCATCACGGCTTAAATTTAGAATTT
ATTTTGCCAAATAAGAAACTTATGTTCTGCATTAAGTACCTGCCCATCATCATGACCGTG
GCTTGAGGGTTGGTCCCTGGTGACCTAGAGAACGTTGAGCCATCAACAACGCGGAGCCCT
GAGACTCCAAGCACCCGGTGCTGCTGGTCGACCACCTTCCCTACATGACACCCACCATGG
TAGTGCCAGATGGTGATTACCGTGTCCTTGCAAAATTGCTCTAGGGATTCTGTGGTATTG
GTATGCTTGGGTATCAGATTCACATTAGCCTGCACGCTCATGTTGAGCACCCTTTCCATT
TCATATCCAGCACCATCAGGAGTCAGATGAGCGAAACTGTTTGTCTTCAGTATTTTCTCA
ATGGTCTTGATGCCATAGACACAACGGCTGAGATCTTGTGGATGGCTGAAATAGTTGAAA
GTAACTGCCGGGTTGTTCTTGACATCAGTGTCAGCAAGGACAAGATGGCCTGTAGACAGC
GGACCATCGATCTTCTCGAGGATAAAACCTCCTTGGAACACCTCTTTGGGTAGACTAAGT
TTGTTATGCGCATACTCCCTGGCTAGTTCCAGGCTTCTTTGCTTCGGAGGAACTGTGGAC
AGCTGTCCGATCTGTATTGGTAGGAATGAAGCATGGTAGTGCATTGGATCAGCAACGGCA
AAAAAAATAAAAAGAGGAATAAATTCACATAATTAATTTTGCAATGATGACATAGTTATA
CTTCATTTCAAGACAATAAGTTTCATTTGACTCCTAGTGAATGATAAAATTATGATTTAA
GGCTTCAATAACTTATGTTTCTTTAATATGCATATGATACCCAAACTACCCATCTTTAAT
TTTAGATTGTCTAGAAAAAAGGTTCATGCAGTGCAATCTGAATCTTGGGGTGAAATTACA
TAATTTGGAACTGGTACGCAAGTATAAGCAGTAAGATTGGTGCCAAACCTCAGCAGACAT
GATTCCGTGGTGGCAGTGGATGCTTTTTTCAGACTGGCCAAAACCACTGCTGGCCTCGAT
GAACACACCGGCTTCAGTGATTCCAACAGTCTCAATCAGTGACTGCCGAGGGGGGCTTTT
CGTAGGTATGAAGATGGAGTTCATGGGGTTGTCAGCCATCCCTTTCCCCACATACTTGTT
GTGAAGAACCACAGGAATGTTATGATTCTTAAGATCGTTCTTGGGCCCGATCCCACTGAG
GAGCAGCAGCTGGGGACTGCCAATTGCACCAGAAGAGACGATGACCTCACTATCCCTGTT
GTTGTTGAGGAGTGCCTGGTGGAGTCTCCCATCTTCATCGGCGAATTGTACCCCGATAGC
CCTTGGTCTCAGTCGTCCTGCACCGGAGTTCATGTGTTATTGAAAAAGGGTACATACATG
ATGGTCTATCGTTGCGCAGTATCTACACTTTCTGTTGTAGAAATTCTAGACTCTTTTTTT
TTTGTGGGAAAAGAGAAGAAAGCTTTTAGGAGCTTGGCTATACCTTGCTGCGAGTTGAAC
ACTATCTTGTGCACACTAGCATGAAGCAGGACCCTCATGTTGTTAGGGTCTCCAGCAGCA
AGCAAGTCGGCCGCTGTGTGGCGGTGGCCATTTGCGTCAAAGATGGTGCCACCAACCTTG
GTCCCAGAAACATGATCATAGGTGTACCCATTGAAAGGGGATACACCTGCTTCAACAAGC
CCATCCCGCAGTGCAGCCTGCCAAGGCGCGATCTTAGGCCACTGGACAACCTTATCCTCT
ACCCAAGGGTAGGACTCATTCACCAGGTCTTCTTCCCAGCCAACATCCTGCACAAAGCTG
CTTGGTCCAAGAAACACAAGGTATGTAAGTTTCAGGTTAGATAGAATAAGTGAATTGCCA
TCAGGAAAAATACTGACATGATATTTATGTTTTTTTAAGACACTGTGGCATGCTTATCAA
TTACAAATGTATGTTTGCTGATTCATTTTTCATAGGTTCGGTTTCACTAATGCGATATAT
GTCTGAAACTTATTCTTGGTTCAAACTTTAAGTTGCGCTGAACTGTACTGTGGTTATGGT
TATCTCTCGGGCTTTGCTTAGCTAACATAGTTACCATGGCATCATAGATTAATTAATATG
CCCATGTGATTTTGTTTTGTTGCCTCCTTCAGTAATATATAAAATGAAACATGAGTAATT
TCTATATGAGTTTAATTCTGTCAGAGAAACAGAGCACGTGTTATTGCCAGGGCCAGTTAT
TTCTTTGCACTGCCATAACCGAGGCACTTGAATGCAAATTAATGCAGTACGTTCTTGTTT
TTCTTTATGTTATCAAGTTGCCCGCAAGTGCCAATTTTGTACGCAGGTACTCATGGTTAA
AAACACTGCCAGTTTTGCAGCCACACTGAAATAATAACCAAAATACAAGTGGAAGGATCT
ACTACTGACATAACCCAAATTACTGAAGAGGATAAAAGTGTCCGACAATATTCTTCTCTG
CTTTATTGAGAGTAGTACTCCCTCCGTTCCTAAANNTAAGACCTTTTAGAGATTCCACTA
TAAACTACATAGTGATGTATGTAGTCATATTTTAGGACGTAGATTCACTCATTTTGCTTC
GTATCTAGTCTATAGTGAAATCTCTAAAAGGTCTTATATTAAGGAACGGAGGGAGTAGTA
AACAAGACTTGAGCGACTAGCCGGCAAGTCTATTCAAACTGTAATACGATATCTGAACTG
ACTGTACTCTTTCCTAACAAACTTGCTTAATCAACTAGGACTCTAATTAAAGGATAAGAC
TCCACGTTTGATGAATACCAAGTCTAAACTGACTGTACTCTTTCCTAACAAACTTGCTTA
ATCAATTAGGTCTCTAATTAAGGGATAAGACTCCACGTTTGATGAATACCAAGTCTAAAC
TGACTGTACTCTTTCCTAACAAACTTGCTTAATCAACTAGGTCTCTAATTAAGGGATAAG
ACTCCACGTTTGATGGGCTGGCCCACATAACAGTAAGGTCCTAGTCCAATCAAGAGCAGT
GTCGGGTATGGTAATCCAGAGCATAAACTATTCACAGTTGCTTCTTTTGTCATGGTATTC
TTAGTTCTTTGGGGGAGATATTTGAGCTGGTTAGACTTGCGTTTTATTTTGTGTATGCAA
GAACAGTTGCTCTTGCTGTTCATTTCAGCAATCTGTAAATGCAGAGAGTTGGCTACGGCA
GCATACATTGCTAGGGTTGCAGCACTGAAGCAGACCTTCACATTTATTTCTTCCTGGCGC
TATCACTGCCCTGCATTTACCCGACATTTACTGGCCTGAACGGGACACGTCTTGTGCTGC
TGCTGCTGCTGCTGCATAGACTGGATCATGACATGACATTTTACCTAAGCTAACTTGATA
GTATTTTTTTTTTGAGGGGTAACTTGATTGTAGGTTAACTTGAAAGGGACGGTGTTGTTG
ATTTTGGGTTAACATGCATAGACTGCCTTCACGTTTATCATGCACAGTGACAGAGGGAAG
AATGGCGATGAACAATCAAGAAAAATGATGATACGCAACCAGAACAATGCATTGCGCACC
TTGAGCTGGCTCGGCTGTAGAAGCCAGCATTGATGCAGGTACCACCGCCCAGCACCCTTG
CCCGGGCATTGATGACGCCGTCGGTGGAGACGAAGGCCTGCGACGAAGAGTCCGGCGCCG
TGTTGCTCAGGCCGATGTGGAAGTTCTCCATGTAGGAGATGTTGCGGTTGCCATAAGGGG
ATCCGCCCCTCTCCAGCACGAGCACCTTGTACTTGAGCGACAATGTGGCCGCCAGGGGGC
AGCCGGCGGTGCCCCCGCCGACGACAATGTAGTCGTACCTCTCGCGGCGCATCGCGGGGA
AGCTGCTCGCCTTCTCGAGGGGAGGGAGATTCTTCAGCGTGAATGGCGGCTTGGCCGTGC
CCCTGCCTGCAGGTACAAGTAAGTGTTCCATAGTACTGTTTGTTAGTTCCCGCTTAAAGC
TTGCACATTTCTAGCTTGGCTTTGTTTCTTTGTTTTCTGTTTGGCAAAGGAATGTCCCAA
TCTAGTGGTTGAGCTAATGTACTCATTAACTATTTCATCAGGATCTGGTCTCCTGGTATT
ATGCTACTCCAGATAAACAGGTGCGTACACCCTCTTATAGCATATAATATATACTCTCTG
CATTTCTTCGTGTACTCCATTTTCCAAAACATGTGAAGATTTGAATAGTGCATGGTCCTC
TATTACAGAAGAGAAACATAGTCCGAGGGGACAAGCTCACTGAATCTGAATGAGAAAGAA
GGAAGACAGAAGCTGAGAAACACCAGTGCTGCATTGCTTGCTAAGCGACCAATCAATCTC
CCAGCATTGCAAGCTCTTCACTGGGGAAAGTGGAGCAGTGGTGTTTGGATGGATGGAGGC
AGAAATGCCCAAGAAAAACGCAGACAAGAAGAGTGGAAGCGGCGAGGCCCGCACCTTGGC
ATAATCCGAAGAAGCAGAGGCAGACCACGAGCTTGATGCAGAGCAGGGACGCCGCTCCCT
TGCTGGAAGCCATGGAACCTGAGAAGCACCTGCCAGGCTAAGATGGACGGTGGCTGGCTC
TACCAGTCAACTTCCTTCCAGCTCGCTCTGGACCTCTCCAAGCTCGCCCACCGGACTCGA
GGCCCGTTTATGTAGGCGGCGCCGGAGAGGAGGGCCGGAGGCCAATAGAGTATCGTGTGC
GCATTGAAGAGAGCTCACCAGCCGCAGTAAGTGCCATTGAATGCAGAGGGAGCACTGCCC
CGGTACAACTGTGATTTATGGGCTTCATCAACCAACCAACCAATGCAGGGCTGCGCCGGA
GGTACCCACCACCACCACCCCTTCATTTACAAGAATGACTGTCGCCTCCGTCTTCCCAAA
TTTCTTATACGTTTCTCTGTGCATGGCACTCGCCCAATTGGCAAAGCCAGCCCAGCATTT
TCTTTCTTTTTGGCAAAAAATAATAATATGGACGCTGCAAATTTCTTTTTTAAATGGAGA
GAGTCCTGTTCTGTAGCAGATGATGCCGTGCATGAATGCCAGTTATTCCATAGAAAAAGG
CCAGCTCTAGAAAATGCATTGTGCTGTTTTTTTTATACCAGTTGCAGAAAGGGCGTGCTG
CTTGCTGTCTTCTTTTTTTATATAGGGGATGGGTGTGCTGCCATGTTGACGTACCATGCT
GACGTATCTCCTTCCTGGTGGGTTCAACTCCGAGGCCAGAGCTCAGTTCCGATGAAGATT
ATTCATGGTATTTATTGTACTTATTGTACTTCAGTTCATCAGTGCAAACAAGTTAGTGCC
ATCCCTGAAAAACCAAGAGTAAGAGGCACAATGTAATCTATTTCCAAGCGTTTCTTCTTG
CAAAATTGTAGTACTGTGTTGCTGGTGACAATACGATGCATTTTACTACAGCAAGCTGAA
GGCCGAGAAGATTTGAACTGACCAATAGTGCTGTCCAATCTATAGCAGCACTAGATGGAT
TTATATTGATACTGGTGTACTGATGGCTATAGCAAGAGAGCAAGCGATGTTAAATGTTGT
ACACCACACCACATGCCGTCAGATAACCGTGATCCTTGGTACAATGCTGGTATTGTACCC
CCACCCCCCACTGTCCATCTTTGAGGTACAGTAAAAACAATTACATCCACAATCCAGATG
CACTTTTTTTAACTATCTTAAGAAAACACAACTGTTTTATAACTGGTAAGCGGATGAACA
TTACTCATGGCCACCACCATGAGCAACCGCCTCTGTATTCTGCAGCAAAATAATTGACAC
ACAAGAAAAGAGTGAAGCCTAAAGTATCACAGCTACCCCGCAGCTGCAGGCTGCCCTCTT
TCCGTTCGCCTGCTAGCATGGAACCTGTGAGTTGCTGTTAGGACTGACTGGAACATTAGT
AATGCGTACTACTACTGTCTACAGATGTGCCAGCTGCTCTCTTTCTTTCCCTGCAAACAT
ATGACCTGAGAATCGTCTCGTGAAATGATGGCTACTCCCTCTGTAAGCATAAGCAGAGGA
AGTAGTAGAAACTAGTGCTGCTGCTAAACTTGCGTGCTTCAGATTTGGGGTGTGTTTTAA
TATCCATTCCCCCGTTTCCCCCCCTTGCCGCGGCTGTTTGTTTCTGCAACTGGGTCTGTT
GATCTGTCTGCAGATTTGAGGAAAGAGACGTCCTACTCTCCTCTCTGATCTTTAAAGCTC
ACCGGAGCCGGAGGACAAGGAAGGTCTGGCATGGTCACATCTCTCCATCATCATCACATG
ACACCTACCAACCTGATCAAGGCAGTCTTTGTCATGGTACGAATTATAGGGTAAATAGGT
ACGCCTCGTCAGTTCATCACTAGTTTCCTACAGGCCGTTTCACCTGCGCACGCGCGCGCA
CACACAAAGGGCATGTTTGGTTGTTTGCACTGTTTTTCCCCTTGCATATGTGGCTCATGC
TTAGGCCAACTTCATCCTATCCGGATGTCCGTTTTGCCCGGATCCTGTCCGTTTGGAGTG
GTCGATGGGGTCGTGTCCAGACCATTTCTGGGATGCGGTGGTCGTGCGTCCAACGCGCGG
ACGCATCATTGGCTGCATCTTGTCCGCCTCATTTTCAAACACAAGCATTCGAATAGCCAC
GGCCCATAGTTCATGCATGCGGCCCTAGATCACGCCGGCAACACAACCAACCTACATGTC
CTCGCCGGCAACACAGCCAACGGCGAGCAACACAGCCAGCTGCCGGCAACACAGCCTGCC
TCCAAAAAAGAATAGGTTTTTCACCATGCCAGCCTCTAAAAAAGAGAACGGCCACGACCG
ATCTGACGCCCTATTTCAGACCATCGGCGTCGAACATCTCTTTCTGCCAGGCCTCGAACT
GCTCCTTGTCTTCTGTTCATCTTGCTCAAGTCCACGCTCATTATCGCCAGCGCCACCTCC
TTTGCTTTGGTTGCGGCATTGGCGGCCTCGATGTCGAGCTGCCTCTACCTGGTCGC