morexGenes - Barley RNA-seq Database

Contig contig_1558023
Source Contig contig_1558023
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1558023 (7596 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_1558023

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_9890	2	3233 bp	MLOC_9890.2	Available	Available	LOC_Os06g13950.1, FRAME:+2, EVALUE:0.0, 13106.m01541 protein pentatricopeptide, putative, expressed
CDS Structure of MLOC_9890

Contig Sequence (7596 bp)

>contig_1558023 7596 assembly3_WGSMorex_rbca.fasta
CATACACGTTCACGTAGATATTTGCTACAACCGGCGTTTGATTTTTGCTACCACGCACCA
TCAGCTTCTTTTTTTGCTACGATCACGCAGATATTTTTTTGGCTACAACTTACTTTTTTT
TGTAACCGTTGACGAATGTTGCATCGTGGACGAAATTTGTTGCATCGAAAAATTATGCAT
GAAGATCTAACGGCACGGCCCGTGTACAGCTGGCAGATCAGACGGCCCGCGCGCGGCCGG
TCGAACAATTCGGCCGGCACGCCGGCGTAGAGCATTGCCCTTTCCGAACTGCATAATCGA
TTCGGCCCGATATCCTTCCTCATTGAGCCCATTACCGGTTACAATACAGACGAGCTCGGT
GCAATCACCGACGAGGCCTAGTTTGTGCTAATTAAATCAATGAAAATCCAGGGTCAAGTT
TGTTTAAATTATTCAATATCGGTATAGTGTCGGTGTTCTGTTCCAGCCTTTCCAAACTGC
ATAATCGTTTTTGGGGACACCCAAAATTATGGAACGAGTTTTTCCTCTCTCCTTTTTGAG
CATCTGGAACGAGTTTTTCCGGAATGCTATTGTAGCGCGAAATGCATGAAAGCCTCTTGA
CTAGGGGGCTTTTGCCTTGTCGAAATAGCCCAACAGTCCAGCCCACCATTGTTTTTAACC
ATCGCCACACTCGCCGGAGTCGCCGCCAGTTGACACCTCCTTCCTTTCCCTTCTCCGCGC
CCAGGCGAGCTCACCGCCCCGCCGCCTCCTCTCCTTCCGTCCCGGCGCTTCCGCCTCCAA
CGATGTCCGCAGCCAGGCGTCTCGCCGCGGCGCTCCCTAGACCGCGAGCTCAACACCGCC
TCTCCTCCGCCTCCGCCGCCTCCCCACCCACTCCCGCTCCCACCCCGACCGCCTCCTCCG
TCCTCGACGACCTCCTCTCCACGCCCACCCCTTCCGCCTCCGCCCTCTCCCTCCTTCGCG
ACACGCCGTCCCTCTCCGCCGAGCTCTACTCCACCCTCGCCGCGCCCTCCCACGCCCTCA
CCCCCGCCTCCCTCGCGCTCCTCCTCTCCCTTCCCTCATGCCACCGCCTACCGCCCCCAT
CCGCGCCAATCCTCGCCGCCCTCCTTTCCAAGCTCCTTGCTCGTCCTTCCTCCTCTCCCG
CCAACGCAGCTCGCTTCCTCTGTGCCTCCCTGGCCGCTGGCGCCCCGCCGCCAGCAACTT
CTGCCTTCAACACCCTCCTGGCCGCGCTCGCTCGCGCCCGAGACCTTCCGGGAATGACCC
AGCTCTTCTCCTCCATGCGGGACGCCGCCGTCAGACCCGACGTCGTCACCTACGGCATAC
TCGTCAATGGCCTCTGCAAAGCTGGCCGCGTGGGGGACGCCCTCAAGGTGCTCGATGGAA
TGTCTGGTTCAGGCTCTGACGTGCGCCCGGACGTTGTCACGTTGAACACTGTCGTGGATG
GGTTGTGCAAGAGCGGGAGGGTCCAAGAGGCTGTGGCATTTGTGGAGGAGCGGATGAAGA
ATGTGCATGGATGTGCACCCAACACAGTTAGTTATAACTGCTTGGCCGATGCATTTTGCC
GTGCGGGTAATGTCGGCATGGCAAGCGAGATGGTGGAGAGGATGGTGAGGGAGGGCGTGG
CGCCAAATGTCGTCACACTGAACACGATTGTGGGTGGCTTGTGCCGGGTAGGGAGGATTG
GTGGTGCGCTGGACTTCTTTAGGGAGAAAAGAACTGTTTGGCCTCAAGCCAGGGGTAATG
CGGTGACGTACAGCACTCTGGTTGGGGCTTTTCTCCATACCAACAATGTGGGTGTGGCCA
TGGAGTTGTTCCATGAGATGGCAGATGAAGGACACTCACCAGATGCAATCTTGTATTTCA
CCATGATATCGGGATTGACACAAGCAGGGCGGTTGGAGGATGCTTGCTCCATGGCGTCGT
CGATGAAGAAGGCGGGCTTTAAGCTGGATGCAAAAGCATACAATATTCTGATTGGAGGAT
TTTGTAGGAAGAAGAGGATGCATGAGGCTCATGAGTGGCTTGGGAAGATGAAGGAAGCTG
GTTTCCGGCCAGATGTGTACACCTACAATACCTTGTTGTCTGGTTTGTGTAAAGCAGGAG
ATTTCCTGGCTGTGGATGAATTACTGGGGAAGATGATTGAGGATGGTTGCCGGCCTTCTG
TGGTAACCTTTGGTACACTTGTACATGGATATTGCAAAGCTGGTAAAGTAGATGAGGCGA
TGAGGATTTTCCGTTCTATGGATGAATCTGGTATTCAACCCAACACAGTGATATACAATA
CTCTGATCGACTTTCTCTGTAAGAGCAGAAATGCTAGTTTAGCAGTTGAACTGTTTGATG
AGATGAGCGAGAAGCATGTGCCTGCAAACGTAACAACCTTCAATGCATTGTTGAAGGGGC
TTCGTGATAAGAATATGCCAGAAAAGGCCTTTGAATTGATGGATCAGATGAGGGAAGAGA
GGTGCACTCCTGATTACGTGACCATTGATGTTCTCATGGAATGGCTGCCTGTTATTGGTG
AAACAAACAGACTAAAGAATTTTATGCAGCAAGTGGGGCGAATGGCACCAAAAAGGACAA
CTACATAAGAATATGCTAGTTGGCACAATGAAATAATCTCTCTGAAACTATGGAGGCACG
AACTTCGCTTCAGCTTAATCAGCAGTTACAATACCCAGGTGGAATTTGTGATGGGAAGGT
CAGAGCTGATCAGAATTGTCTGCACTCTGCAATCATAAACTGCATTTCAACAACACGTTA
AATTATAGGCCATAATGAATTATGTGCAATCTCAGTCGTGGCTTACGGTGACAACTGGTT
ATGTTTTTCAGTCATCACTAATCATGACACTGTTGGTTGGGTACTCATCAGTTCCTTTTA
TGGTGTTTGTATCCATGAGCGCCAGTATTGAGTAGTGCAGAAAGCAGTTATATCAGTGCT
CAGCTGGTCAGTAGATATTAGTGTAACAGGCAGCAACACATTCTTGGCATGCAGCCGTCT
ACATTAAATGAGCTCTTATTCTTCATCAGATAATTATTGCTGAAGAGACTTACTGATAGA
ATATGCCTGAAAAGGCCTTTGAATCAATGTTCTTATGGAATGCCTGTCTGTCATTGCTGA
AACAGAAAGATGGAAGGACTTTATGCAGCAATGGGACAATGCGGCACCCAAGATGATAAT
GATAAGAATATGCTTAGTCGACACCAAGAGTTTTGCTTAAAGGAGGAGGCCATGAGTTTT
GCTTCAGATTAATCTAGAATAGCAATACCAAGGTGTAACTTGTGATGGAAAGAGCTGTGT
TTGCTAGAAAACCAGCTGCTGAAGCCTGGCTGTCCTAATATAACGCCTGCCCCTGTGATC
AGAATTGTCTGCACCCTGCAATCATAAATAGCCAGCAGTACGTTCAGTTATAGGCCATAC
TGAATTCTGTAGGGTCTCATTCATCACATATGTGATATGTGACAGATGCCCAAGTTTTTC
TGTGCTAATCAGGGCACTGACTCGGGGGCTCATCGGTTCCTTTCTCTGGTGTTTGCCGGC
ACCTGCGTTACAACTGAAGAATGCAGAGGCCGATACCTTGCACATTTACAATCTAATCAC
TTCAGCGCTCAACTGCTTAAAAGATAGTAGGGGGGCATACGGCAGTACATGGTTTATGCA
AACATATATATCAAGTGATCTCCTTGTTCTTCAGCAGATAAAGGTGATAGTTGCACTTCG
GAAAGATAAAAAAACGTGGGCGTGTAAGGGTGGATTCTGTAAAGAAGAAAGCCTGTTATA
TTACCATATTTTATTTATTATGATTGAAGAGAGCGTTGAGTTCTAATGGTAAAAGCATGT
ATGCGCAGATTTCTTGACAATTGTATAAATCTTGATTTGAAAATTCTAAGTGCGTACTAT
GTTTGGATTTATTCAGAATTGCATATTCACCATTTTACAGGACAACTTACCTTGGAACAC
TGCAATTAATCACCGTAATTATATACGTACGTGATGGTACCCTGGTTAGTTCTGACAGAG
CATCAAACCCATGACAGTTAGTTTACCTCATTTTCACCGTGCAAGAAATTGTATGCCTAT
TAAATCTGTCTGATGGTGGAGGAGGGACTGTCTAGTTGTTACAGCGACATATATATGGTT
ATAAGACATTCCATATTTCACATCCTCATCTTTCCAGAAATAATATGCCTGTTAGTTCAG
TGATTGTGGCTTTGCATTTGAAATCTTAGATATTCGATCAAGCTCTAAATTTTCAGTTTG
TTGCCAGTATGTTCATGTAATAGATAGCTTCAGTGAGGTTGCACCTCGCATCTGCTGCAT
ATGGCTAGCAGTTACTACATGGCCGAGACAAAAAGAAATGCTGCCAGTCCAAAAATGTTA
CTCCTTCCGATCCATAATAAGTGTCGCAGTTTTGAACTGGAGGTAGTAGTTGAAAACATC
CTAACTTTGATGCCTTGCAGGGTTCAGCTGGAATACTTGCTGTTCTTTTCACCATTACCT
CATCCCTGTACCATCCTTGCTTGTCAATTTCGATGTTCTTGGGACTTGCAACAAATCTTT
GCCGAAAACAGAGGGGGAGATGGATGCAGCTCCGATACTGATGGCTTGACAATCTAATAA
ATTGCACTCCCAGGAGGTGCACTGCGCCGTGCTGCATCATAAGCATCATCATGATAGAGG
TAACTGAATTCATGTCCACCTGGTCAGTTCTGATTTTGCTGGCAAATGCACACAACAGAG
ATATACTTGTTTAACGTAATGGTTCATACTCGAGTTCCTAATCACTCTACCAAACCTGAT
ATGCAACTGGTATCCTGAACTTGTGAACAACATTATTACGATTCAAGCTCCTACTAATGC
TAGGCTTACTTTTAAGACATTTGAAGTAGCAAGTGCCGTGCAAACATGAAACTGAAGGAG
GCTAGCAAGAGGAGTGATCCATTGGTGTTGCTTTTTTAAACGTCCAAGCATGAATTTTTT
CCAGAGCTGCGTTCTAATGTCTAACCATGATGTAGTTATGGTACAAGTTAACAGACTTTT
GTAACCTTAACAATGACCCACGTGGACATCTCACTTGAACAATACTCCCTCCTTAACTAA
ATATAAGACGTATTTGCAGGTCAATTTAAACTGCAAAAACGTCTTATATTTAGTTACGGG
GTTAGTATATTACTATCTCAACGTCTTAATGACCTTACGACCGTCAAAATGCATATTTGC
CTCGAGAAAAATGTGAATGCATCTGCCCGATAGGACTAGCTTTATAAATTATAATCACAT
AGCTTTGTGTATGCGGTGATATCTGACATCCTATGTTCAGATGCAGGAAACACATGTTAG
AGAAATGCGGCAGATGGCATGGAAAAATGGGAGAGTTAACTTGACTGAAAGTAGTACTCC
TACTAGCAGATAGCGTGCATTCAGACAAGAAGAGAGGTTCAGGTGCAGATTGGAGAGAAG
CAGAGGGTTGCCGGTGGTACGCTTCCTGTCAGTTGATGACAGCCATGTATGCTGACTTGC
TCGTGTGTATTGTTTCCTCTATCTACTACAGTACCGGAAGTCATGGGGAAGTCAACAGAA
GCCATGATTTTCGAACCGGCCAGCAGAAACGGAGTTGGCAAGTCCGAGGCTGGTCCAGTT
TTGGTAAATTCTGTGTTTCAGTCGGTGGTAAATAAAAGCCGTTTTCACGCCTTCGGTAAA
CAGAAACGCCGGTAATTTTTTGCATTACCTTTGCATTACCTCCAAACCTGCATTATTCAT
ATCATATGCTATCATTGCTTAAACAGGGGAGCCGTGTTAAGCGGGTGACTAGTACTGAGT
CATGGCTAATGACGAAGAATTCAACTAATACTGCTCCAGTACAAGTAAGACTTGTATGAC
CCAACATTTGCATGTTCCTTGTCGTGCAGGGAGGTGACAAGGAACTGACGGCCGGAGCTT
CCCGTCCATGAAGCCGGAACCCTGGTCCGGTACTCCGGTCACCCGTAGCAATGGCACATT
CAAATCACAGTGCCGTCTCATCTCATCCAGGGCAGTTGATTCCAGGTCGCTTGATTGATC
GCTACATTACAGTCCAGTGCTTTCTCCGAAGAATATGGCTTCAAGTTGCAGCAGAATTCT
ACGTACATCCAGCCAAGTTGGTTGGTTGAGGCCAAGTTGGCTCGTGTTCCTGCCTGCGAC
CTACTGCATCGATCGGCAACGGCGAGTCAAGATGATCGGTGAGCAGCACTCGCTCGGGAC
GTTGAAATCCATGGCATTGACATGGCATAGCACGCGCTTCCGGCCGAGAGTTCCACAAGT
CACGTTCTCCTCCTACGAAATGGTCGTAGGTTTCTCTCGTGTTGCCAACATGCCGGCATT
ACGATTCTTTACAAACAATCTTATACTAGCTCTATCTCATGTACCAAGGTGGAGAACGGT
ATTACCGTGTACTGAAGCTGCGACGATTAATATGAATGAATCGGAGGATGGTACAAAAAT
ATGGTCATGTCGACAGGACGCCACGGAAAAATTCTTGTGCAGCTCAGCCGCCTCAGCTTC
CACATCGTAACACCCAAATCCACAGTTAGCGTCCTTCGCAAGAGGAAAATTATTTCAGTT
CCAGCGCATCCTGGTTAGCACTGGGGTTTAGTATCGAGCTATGGTGGTATAGACAAAAGT
TTAGACCAGAGTCAACCGGCAAATAGGAATGCATGTGATATTTCTGGCACTAGAACAGTA
GCCAATGCCACTTATTACTGCCAGATACCGTGTCGCCCTTGAACTCCGGCGCATTCCAAA
TAAGAAGAAGAAATACGTGGAGTTTCGCTCGTGCAAGCCATGTGGAGTTGTGACGGAGCG
GCTTATCTTAACACACGTAAGTATGAGCATTTTCTTGGAAGTTAGCTAGGGTTTTTGACT
CTGGACGGACACGCCGCGCGCGAGGTCGATCGTGAGAATTCAGCCCAAATTCGCAGTACA
AGGACAGAGCAGTCAGAGCTGCATGCATGCATGCACGGGCGTGCCTGCTTGAAAATTCCA
TGCAACGCGACCGTAACAGTGTTAGTTTTGACCGTAACAGTGGACCTGTACGTGTCACGG
ACGACCGGAGCACGCATAGCCGATGGATGGCGAAACAAAGCTTTTTTCCTTTCTGCCTAA
TTAAGTACGTCTCCATCGGTCTCCAATGGATCGGAGTTGCTCGAGTCAGGCTAAGCTAGC
TAGACCCCGAATCTGCCTTGTCTCTCAAGGCGTTTCCCTGGTCTCAAACCCAAACTTGCT
CTCTTGAGCATCATTATTCTTCTCTCCTAGCCAGACCATTTTTCAACTATAATTATTCAG
ATAAAAAAAAGTATGAAACAGATATAGTACTCCTTCATTGTCATCGTCGGAACTCACGAG
ATCGCAGCGCGCGTGCTGGCGAGTTCAGTCCAACTAATCGGTCTGCGTGAGTTGGATCAC
CGGCACTTTGCCATGGGTACGTGTATACTCCCTCCGTTATTAAATATAAGTCTTTCTAAA
GGTTTCACTGATGAACTACATACGGATGTATACATACATACTTTAGAATGTAGGTTCATT
CATTTTGCTTCGTATGTAGACGCCTAGTGAAATATC